data_1NVB # _model_server_result.job_id otFA4oWgFLmdUtLb0ly6mA _model_server_result.datetime_utc '2025-07-19 20:33:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nvb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":600}' # _entry.id 1NVB # _exptl.entry_id 1NVB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NVB _cell.length_a 131.55 _cell.length_b 84.19 _cell.length_c 73.74 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,J 1 1,2 B,H,I,K 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 131.55 84.19 0 3 'crystal symmetry operation' 2_755 -x+2,-y,z -1 0 0 0 -1 0 0 0 1 263.1 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 194 A GLU 194 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc2 A NE2 HIS 271 A HIS 271 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc3 A NE2 HIS 287 A HIS 287 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc4 G O4 CRB . A CRB 500 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc5 G O5 CRB . A CRB 500 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc6 B OE2 GLU 194 B GLU 194 1_555 H ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc7 B NE2 HIS 271 B HIS 271 1_555 H ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc8 B NE2 HIS 287 B HIS 287 1_555 H ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc9 I O4 CRB . B CRB 501 1_555 H ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc10 I O5 CRB . B CRB 501 1_555 H ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1NVB _atom_sites.fract_transf_matrix[1][1] 0.007602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 600 600 ZN ZN . D 3 CL A 1 604 604 CL CL . E 3 CL A 1 605 605 CL CL . F 4 NAD A 1 400 400 NAD NAD . G 5 CRB A 1 500 500 CRB CRB . H 2 ZN B 1 601 601 ZN ZN . I 5 CRB B 1 501 501 CRB CRB . J 6 HOH A 1 606 5 HOH HOH . J 6 HOH A 2 607 12 HOH HOH . J 6 HOH A 3 608 18 HOH HOH . J 6 HOH A 4 609 19 HOH HOH . J 6 HOH A 5 610 20 HOH HOH . J 6 HOH A 6 611 22 HOH HOH . J 6 HOH A 7 612 32 HOH HOH . J 6 HOH A 8 613 33 HOH HOH . J 6 HOH A 9 614 34 HOH HOH . J 6 HOH A 10 615 46 HOH HOH . J 6 HOH A 11 616 54 HOH HOH . J 6 HOH A 12 617 57 HOH HOH . J 6 HOH A 13 618 61 HOH HOH . J 6 HOH A 14 619 67 HOH HOH . J 6 HOH A 15 620 89 HOH HOH . J 6 HOH A 16 621 92 HOH HOH . J 6 HOH A 17 622 98 HOH HOH . J 6 HOH A 18 623 99 HOH HOH . J 6 HOH A 19 624 103 HOH HOH . J 6 HOH A 20 625 108 HOH HOH . J 6 HOH A 21 626 112 HOH HOH . J 6 HOH A 22 627 114 HOH HOH . J 6 HOH A 23 628 115 HOH HOH . J 6 HOH A 24 629 119 HOH HOH . J 6 HOH A 25 630 122 HOH HOH . J 6 HOH A 26 631 129 HOH HOH . J 6 HOH A 27 632 135 HOH HOH . J 6 HOH A 28 633 138 HOH HOH . J 6 HOH A 29 634 147 HOH HOH . J 6 HOH A 30 635 154 HOH HOH . J 6 HOH A 31 636 157 HOH HOH . J 6 HOH A 32 637 165 HOH HOH . J 6 HOH A 33 638 167 HOH HOH . J 6 HOH A 34 639 178 HOH HOH . J 6 HOH A 35 640 180 HOH HOH . J 6 HOH A 36 641 182 HOH HOH . J 6 HOH A 37 642 183 HOH HOH . J 6 HOH A 38 643 185 HOH HOH . J 6 HOH A 39 644 187 HOH HOH . J 6 HOH A 40 645 188 HOH HOH . J 6 HOH A 41 646 190 HOH HOH . J 6 HOH A 42 647 194 HOH HOH . J 6 HOH A 43 648 205 HOH HOH . J 6 HOH A 44 649 211 HOH HOH . J 6 HOH A 45 650 214 HOH HOH . J 6 HOH A 46 651 216 HOH HOH . J 6 HOH A 47 652 224 HOH HOH . J 6 HOH A 48 653 227 HOH HOH . J 6 HOH A 49 654 233 HOH HOH . J 6 HOH A 50 655 242 HOH HOH . J 6 HOH A 51 656 243 HOH HOH . J 6 HOH A 52 657 252 HOH HOH . J 6 HOH A 53 658 254 HOH HOH . J 6 HOH A 54 659 258 HOH HOH . J 6 HOH A 55 660 259 HOH HOH . J 6 HOH A 56 661 260 HOH HOH . J 6 HOH A 57 662 261 HOH HOH . J 6 HOH A 58 663 267 HOH HOH . J 6 HOH A 59 664 280 HOH HOH . J 6 HOH A 60 665 281 HOH HOH . J 6 HOH A 61 666 284 HOH HOH . J 6 HOH A 62 667 292 HOH HOH . J 6 HOH A 63 668 293 HOH HOH . J 6 HOH A 64 669 297 HOH HOH . J 6 HOH A 65 670 298 HOH HOH . J 6 HOH A 66 671 311 HOH HOH . J 6 HOH A 67 672 312 HOH HOH . J 6 HOH A 68 673 315 HOH HOH . J 6 HOH A 69 674 316 HOH HOH . J 6 HOH A 70 675 320 HOH HOH . J 6 HOH A 71 676 321 HOH HOH . J 6 HOH A 72 677 325 HOH HOH . J 6 HOH A 73 678 328 HOH HOH . J 6 HOH A 74 679 333 HOH HOH . J 6 HOH A 75 680 334 HOH HOH . J 6 HOH A 76 681 341 HOH HOH . J 6 HOH A 77 682 344 HOH HOH . J 6 HOH A 78 683 354 HOH HOH . J 6 HOH A 79 684 370 HOH HOH . J 6 HOH A 80 685 378 HOH HOH . J 6 HOH A 81 686 385 HOH HOH . J 6 HOH A 82 687 395 HOH HOH . J 6 HOH A 83 688 397 HOH HOH . J 6 HOH A 84 689 414 HOH HOH . J 6 HOH A 85 690 417 HOH HOH . J 6 HOH A 86 691 419 HOH HOH . J 6 HOH A 87 692 420 HOH HOH . J 6 HOH A 88 693 422 HOH HOH . J 6 HOH A 89 694 424 HOH HOH . J 6 HOH A 90 695 425 HOH HOH . J 6 HOH A 91 696 426 HOH HOH . J 6 HOH A 92 697 427 HOH HOH . J 6 HOH A 93 698 429 HOH HOH . J 6 HOH A 94 699 430 HOH HOH . J 6 HOH A 95 700 438 HOH HOH . J 6 HOH A 96 701 440 HOH HOH . J 6 HOH A 97 702 441 HOH HOH . J 6 HOH A 98 703 442 HOH HOH . J 6 HOH A 99 704 447 HOH HOH . J 6 HOH A 100 705 448 HOH HOH . J 6 HOH A 101 706 451 HOH HOH . J 6 HOH A 102 707 472 HOH HOH . J 6 HOH A 103 708 474 HOH HOH . J 6 HOH A 104 709 475 HOH HOH . J 6 HOH A 105 710 476 HOH HOH . J 6 HOH A 106 711 477 HOH HOH . J 6 HOH A 107 712 478 HOH HOH . J 6 HOH A 108 713 479 HOH HOH . J 6 HOH A 109 714 481 HOH HOH . J 6 HOH A 110 715 483 HOH HOH . J 6 HOH A 111 716 484 HOH HOH . J 6 HOH A 112 717 485 HOH HOH . J 6 HOH A 113 718 487 HOH HOH . J 6 HOH A 114 719 489 HOH HOH . J 6 HOH A 115 720 490 HOH HOH . J 6 HOH A 116 721 494 HOH HOH . K 6 HOH B 1 602 1 HOH HOH . K 6 HOH B 2 603 4 HOH HOH . K 6 HOH B 3 604 9 HOH HOH . K 6 HOH B 4 605 13 HOH HOH . K 6 HOH B 5 606 16 HOH HOH . K 6 HOH B 6 607 17 HOH HOH . K 6 HOH B 7 608 30 HOH HOH . K 6 HOH B 8 609 31 HOH HOH . K 6 HOH B 9 610 35 HOH HOH . K 6 HOH B 10 611 39 HOH HOH . K 6 HOH B 11 612 44 HOH HOH . K 6 HOH B 12 613 49 HOH HOH . K 6 HOH B 13 614 50 HOH HOH . K 6 HOH B 14 615 55 HOH HOH . K 6 HOH B 15 616 63 HOH HOH . K 6 HOH B 16 617 69 HOH HOH . K 6 HOH B 17 618 71 HOH HOH . K 6 HOH B 18 619 73 HOH HOH . K 6 HOH B 19 620 74 HOH HOH . K 6 HOH B 20 621 75 HOH HOH . K 6 HOH B 21 622 77 HOH HOH . K 6 HOH B 22 623 83 HOH HOH . K 6 HOH B 23 624 88 HOH HOH . K 6 HOH B 24 625 90 HOH HOH . K 6 HOH B 25 626 91 HOH HOH . K 6 HOH B 26 627 101 HOH HOH . K 6 HOH B 27 628 116 HOH HOH . K 6 HOH B 28 629 120 HOH HOH . K 6 HOH B 29 630 121 HOH HOH . K 6 HOH B 30 631 152 HOH HOH . K 6 HOH B 31 632 155 HOH HOH . K 6 HOH B 32 633 160 HOH HOH . K 6 HOH B 33 634 163 HOH HOH . K 6 HOH B 34 635 168 HOH HOH . K 6 HOH B 35 636 170 HOH HOH . K 6 HOH B 36 637 174 HOH HOH . K 6 HOH B 37 638 179 HOH HOH . K 6 HOH B 38 639 189 HOH HOH . K 6 HOH B 39 640 201 HOH HOH . K 6 HOH B 40 641 203 HOH HOH . K 6 HOH B 41 642 212 HOH HOH . K 6 HOH B 42 643 217 HOH HOH . K 6 HOH B 43 644 223 HOH HOH . K 6 HOH B 44 645 228 HOH HOH . K 6 HOH B 45 646 229 HOH HOH . K 6 HOH B 46 647 230 HOH HOH . K 6 HOH B 47 648 240 HOH HOH . K 6 HOH B 48 649 245 HOH HOH . K 6 HOH B 49 650 246 HOH HOH . K 6 HOH B 50 651 251 HOH HOH . K 6 HOH B 51 652 253 HOH HOH . K 6 HOH B 52 653 257 HOH HOH . K 6 HOH B 53 654 263 HOH HOH . K 6 HOH B 54 655 265 HOH HOH . K 6 HOH B 55 656 269 HOH HOH . K 6 HOH B 56 657 270 HOH HOH . K 6 HOH B 57 658 273 HOH HOH . K 6 HOH B 58 659 274 HOH HOH . K 6 HOH B 59 660 275 HOH HOH . K 6 HOH B 60 661 288 HOH HOH . K 6 HOH B 61 662 307 HOH HOH . K 6 HOH B 62 663 314 HOH HOH . K 6 HOH B 63 664 317 HOH HOH . K 6 HOH B 64 665 327 HOH HOH . K 6 HOH B 65 666 329 HOH HOH . K 6 HOH B 66 667 330 HOH HOH . K 6 HOH B 67 668 337 HOH HOH . K 6 HOH B 68 669 352 HOH HOH . K 6 HOH B 69 670 353 HOH HOH . K 6 HOH B 70 671 356 HOH HOH . K 6 HOH B 71 672 357 HOH HOH . K 6 HOH B 72 673 359 HOH HOH . K 6 HOH B 73 674 371 HOH HOH . K 6 HOH B 74 675 381 HOH HOH . K 6 HOH B 75 676 387 HOH HOH . K 6 HOH B 76 677 392 HOH HOH . K 6 HOH B 77 678 402 HOH HOH . K 6 HOH B 78 679 406 HOH HOH . K 6 HOH B 79 680 411 HOH HOH . K 6 HOH B 80 681 456 HOH HOH . K 6 HOH B 81 682 459 HOH HOH . K 6 HOH B 82 683 461 HOH HOH . K 6 HOH B 83 684 462 HOH HOH . K 6 HOH B 84 685 463 HOH HOH . K 6 HOH B 85 686 465 HOH HOH . K 6 HOH B 86 687 468 HOH HOH . K 6 HOH B 87 688 469 HOH HOH . K 6 HOH B 88 689 480 HOH HOH . K 6 HOH B 89 690 482 HOH HOH . K 6 HOH B 90 691 495 HOH HOH . K 6 HOH B 91 692 496 HOH HOH . K 6 HOH B 92 693 498 HOH HOH . K 6 HOH B 93 694 499 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 86.101 _atom_site.Cartn_y 45.254 _atom_site.Cartn_z 24.287 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 600 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #