data_1NVL # _model_server_result.job_id Rr5MwI36rjX4WOGvzmS-Zg _model_server_result.datetime_utc '2025-02-27 01:22:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nvl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":87}' # _entry.id 1NVL # _exptl.entry_id 1NVL _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id S1P _struct_conn.ptnr1_label_comp_id COA _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id COA _struct_conn.ptnr1_auth_seq_id 87 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id PLM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLM _struct_conn.ptnr2_auth_seq_id 88 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.818 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 1NVL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 87 1 COA COA . C 3 PLM A 1 88 2 PLM PLY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 16.216 2.372 -7.053 1 0.56 ? N1A COA 87 A 1 HETATM 2 C C2A COA . . . B 2 17.02 2.092 -8.081 1 0.59 ? C2A COA 87 A 1 HETATM 3 N N3A COA . . . B 2 17.737 2.949 -8.806 1 0.78 ? N3A COA 87 A 1 HETATM 4 C C4A COA . . . B 2 17.578 4.233 -8.385 1 0.97 ? C4A COA 87 A 1 HETATM 5 C C5A COA . . . B 2 16.789 4.668 -7.355 1 0.97 ? C5A COA 87 A 1 HETATM 6 C C6A COA . . . B 2 16.086 3.658 -6.673 1 0.76 ? C6A COA 87 A 1 HETATM 7 N N6A COA . . . B 2 15.296 3.91 -5.649 1 0.74 ? N6A COA 87 A 1 HETATM 8 N N7A COA . . . B 2 16.87 6.046 -7.213 1 1.2 ? N7A COA 87 A 1 HETATM 9 C C8A COA . . . B 2 17.706 6.39 -8.159 1 1.32 ? C8A COA 87 A 1 HETATM 10 N N9A COA . . . B 2 18.172 5.341 -8.906 1 1.19 ? N9A COA 87 A 1 HETATM 11 C C1B COA . . . B 2 19.139 5.329 -10.016 1 1.27 ? C1B COA 87 A 1 HETATM 12 C C2B COA . . . B 2 19.282 6.642 -10.793 1 1.06 ? C2B COA 87 A 1 HETATM 13 O O2B COA . . . B 2 18.375 6.645 -11.91 1 1.17 ? O2B COA 87 A 1 HETATM 14 C C3B COA . . . B 2 20.723 6.524 -11.27 1 1.11 ? C3B COA 87 A 1 HETATM 15 O O3B COA . . . B 2 20.83 5.579 -12.383 1 1.39 ? O3B COA 87 A 1 HETATM 16 P P3B COA . . . B 2 20.795 5.878 -13.969 1 1.31 ? P3B COA 87 A 1 HETATM 17 O O7A COA . . . B 2 20.525 4.546 -14.504 1 1.43 ? O7A COA 87 A 1 HETATM 18 O O8A COA . . . B 2 22.127 6.364 -14.363 1 1.81 ? O8A COA 87 A 1 HETATM 19 O O9A COA . . . B 2 19.625 6.745 -14.186 1 2.51 ? O9A COA 87 A 1 HETATM 20 C C4B COA . . . B 2 21.378 5.898 -10.01 1 1.22 ? C4B COA 87 A 1 HETATM 21 O O4B COA . . . B 2 20.394 5.077 -9.379 1 1.33 ? O4B COA 87 A 1 HETATM 22 C C5B COA . . . B 2 21.873 6.908 -8.907 1 1.02 ? C5B COA 87 A 1 HETATM 23 O O5B COA . . . B 2 20.913 7.822 -8.315 1 0.73 ? O5B COA 87 A 1 HETATM 24 P P1A COA . . . B 2 21.02 9.441 -8.418 1 1.54 ? P1A COA 87 A 1 HETATM 25 O O1A COA . . . B 2 22.385 9.867 -8.044 1 2.98 ? O1A COA 87 A 1 HETATM 26 O O2A COA . . . B 2 20.499 9.832 -9.74 1 2.55 ? O2A COA 87 A 1 HETATM 27 O O3A COA . . . B 2 19.966 9.955 -7.387 1 2.9 ? O3A COA 87 A 1 HETATM 28 P P2A COA . . . B 2 20.368 10.104 -5.889 1 2.14 ? P2A COA 87 A 1 HETATM 29 O O4A COA . . . B 2 21.508 11.022 -5.699 1 1.53 ? O4A COA 87 A 1 HETATM 30 O O5A COA . . . B 2 19.096 10.423 -5.198 1 1.92 ? O5A COA 87 A 1 HETATM 31 O O6A COA . . . B 2 20.745 8.622 -5.298 1 2.9 ? O6A COA 87 A 1 HETATM 32 C CBP COA . . . B 2 22.867 7.255 -4.899 1 1.76 ? CBP COA 87 A 1 HETATM 33 C CCP COA . . . B 2 21.805 8.298 -4.337 1 1.58 ? CCP COA 87 A 1 HETATM 34 C CDP COA . . . B 2 23.661 7.893 -6.06 1 1.71 ? CDP COA 87 A 1 HETATM 35 C CEP COA . . . B 2 22.103 6.027 -5.388 1 2.41 ? CEP COA 87 A 1 HETATM 36 C CAP COA . . . B 2 23.853 6.771 -3.799 1 1.54 ? CAP COA 87 A 1 HETATM 37 O OAP COA . . . B 2 24.403 7.964 -3.248 1 0.85 ? OAP COA 87 A 1 HETATM 38 C C9P COA . . . B 2 24.977 5.777 -4.292 1 3.56 ? C9P COA 87 A 1 HETATM 39 O O9P COA . . . B 2 25.066 5.273 -5.4 1 5.84 ? O9P COA 87 A 1 HETATM 40 N N8P COA . . . B 2 25.817 5.547 -3.329 1 3.23 ? N8P COA 87 A 1 HETATM 41 C C7P COA . . . B 2 27.015 4.648 -3.447 1 5.25 ? C7P COA 87 A 1 HETATM 42 C C6P COA . . . B 2 28.029 5.1 -2.312 1 4.74 ? C6P COA 87 A 1 HETATM 43 C C5P COA . . . B 2 27.134 5.204 -1.087 1 2.72 ? C5P COA 87 A 1 HETATM 44 O O5P COA . . . B 2 26.918 6.24 -0.5 1 3.99 ? O5P COA 87 A 1 HETATM 45 N N4P COA . . . B 2 26.643 4.043 -0.782 1 0.77 ? N4P COA 87 A 1 HETATM 46 C C3P COA . . . B 2 25.706 3.77 0.343 1 2.49 ? C3P COA 87 A 1 HETATM 47 C C2P COA . . . B 2 24.588 3.301 -0.566 1 3.66 ? C2P COA 87 A 1 HETATM 48 S S1P COA . . . B 2 22.935 2.705 -0.151 1 5.57 ? S1P COA 87 A 1 HETATM 49 H H2A COA . . . B 2 17.083 1.047 -8.356 1 0.45 ? H2A COA 87 A 1 HETATM 50 H H61A COA . . . B 2 14.783 3.153 -5.225 1 0.55 ? H61A COA 87 A 1 HETATM 51 H H62A COA . . . B 2 15.217 4.854 -5.303 1 0.92 ? H62A COA 87 A 1 HETATM 52 H H8A COA . . . B 2 18.034 7.408 -8.366 1 1.5 ? H8A COA 87 A 1 HETATM 53 H H1B COA . . . B 2 18.948 4.513 -10.711 1 1.48 ? H1B COA 87 A 1 HETATM 54 H H2B COA . . . B 2 19.152 7.526 -10.17 1 0.87 ? H2B COA 87 A 1 HETATM 55 H HO2A COA . . . B 2 18.878 6.943 -12.686 1 1.31 ? HO2A COA 87 A 1 HETATM 56 H H3B COA . . . B 2 21.148 7.499 -11.511 1 0.95 ? H3B COA 87 A 1 HETATM 57 H H4B COA . . . B 2 22.179 5.241 -10.315 1 1.41 ? H4B COA 87 A 1 HETATM 58 H H51A COA . . . B 2 22.245 6.3 -8.081 1 1.32 ? H51A COA 87 A 1 HETATM 59 H H52A COA . . . B 2 22.727 7.451 -9.284 1 0.91 ? H52A COA 87 A 1 HETATM 60 H H121 COA . . . B 2 21.488 7.922 -3.372 1 1.7 ? H121 COA 87 A 1 HETATM 61 H H122 COA . . . B 2 22.323 9.221 -4.117 1 2.01 ? H122 COA 87 A 1 HETATM 62 H H131 COA . . . B 2 22.962 8.169 -6.823 1 3.07 ? H131 COA 87 A 1 HETATM 63 H H132 COA . . . B 2 24.199 8.777 -5.755 1 2.58 ? H132 COA 87 A 1 HETATM 64 H H133 COA . . . B 2 24.359 7.195 -6.494 1 1.66 ? H133 COA 87 A 1 HETATM 65 H H141 COA . . . B 2 21.379 6.329 -6.132 1 4.3 ? H141 COA 87 A 1 HETATM 66 H H142 COA . . . B 2 21.581 5.576 -4.56 1 1.97 ? H142 COA 87 A 1 HETATM 67 H H143 COA . . . B 2 22.789 5.315 -5.813 1 2.57 ? H143 COA 87 A 1 HETATM 68 H H10 COA . . . B 2 23.295 6.272 -3.023 1 1.92 ? H10 COA 87 A 1 HETATM 69 H HO1 COA . . . B 2 24.067 8.697 -3.785 1 0.86 ? HO1 COA 87 A 1 HETATM 70 H HN8 COA . . . B 2 25.584 6.038 -2.51 1 2.34 ? HN8 COA 87 A 1 HETATM 71 H H71 COA . . . B 2 26.671 3.624 -3.352 1 6.04 ? H71 COA 87 A 1 HETATM 72 H H72 COA . . . B 2 27.448 4.771 -4.432 1 6.59 ? H72 COA 87 A 1 HETATM 73 H H61 COA . . . B 2 28.807 4.377 -2.12 1 4.85 ? H61 COA 87 A 1 HETATM 74 H H62 COA . . . B 2 28.462 6.07 -2.504 1 6.33 ? H62 COA 87 A 1 HETATM 75 H HN4 COA . . . B 2 26.917 3.295 -1.341 1 1.51 ? HN4 COA 87 A 1 HETATM 76 H H31 COA . . . B 2 26.078 2.995 0.998 1 2.89 ? H31 COA 87 A 1 HETATM 77 H H32 COA . . . B 2 25.468 4.68 0.883 1 3.78 ? H32 COA 87 A 1 HETATM 78 H H21 COA . . . B 2 25.033 2.485 -1.118 1 3.37 ? H21 COA 87 A 1 HETATM 79 H H22 COA . . . B 2 24.416 4.119 -1.249 1 4.67 ? H22 COA 87 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 6091 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 79 #