data_1NVS
#
_model_server_result.job_id            3IaNJ1HEzqny-dubzH6uHQ 
_model_server_result.datetime_utc      '2024-11-24 18:25:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1nvs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":400}' 
#
_entry.id    1NVS 
#
_exptl.entry_id    1NVS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              393.394 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "REL-(9R,12S)-9,10,11,12-TETRAHYDRO-9,12-EPOXY-1H-DIINDOLO[1,2,3-FG:3',2',1'-KL]PYRROLO[3,4-I][1,6]BENZODIAZOCINE-1,3(2H)-DIONE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.21 
_cell.angle_gamma         90 
_cell.entry_id            1NVS 
_cell.length_a            45.032 
_cell.length_b            65.897 
_cell.length_c            58.156 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NVS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C24 H15 N3 O3' 
_chem_comp.formula_weight    393.394 
_chem_comp.id                UCM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "REL-(9R,12S)-9,10,11,12-TETRAHYDRO-9,12-EPOXY-1H-DIINDOLO[1,2,3-FG:3',2',1'-KL]PYRROLO[3,4-I][1,6]BENZODIAZOCINE-1,3(2H)-DIONE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     SB218078 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N18 C29 UCM sing 362 n n 
N18 C27 UCM sing 363 n n 
N18 H18 UCM sing 364 n n 
C29 O30 UCM doub 365 n n 
C29 C10 UCM sing 366 n n 
C10 C09 UCM doub 367 n y 
C10 C11 UCM sing 368 n y 
C09 C15 UCM sing 369 n y 
C09 C08 UCM sing 370 n y 
C15 C16 UCM doub 371 n y 
C15 C31 UCM sing 372 n y 
C16 C34 UCM sing 373 n y 
C16 N17 UCM sing 374 n y 
C34 C33 UCM doub 375 n y 
C34 H34 UCM sing 376 n n 
C33 C32 UCM sing 377 n y 
C33 H33 UCM sing 378 n n 
C32 C31 UCM doub 379 n y 
C32 H32 UCM sing 380 n n 
C31 H31 UCM sing 381 n n 
N17 C08 UCM sing 382 n y 
N17 C02 UCM sing 383 n n 
C08 C07 UCM doub 384 n y 
C07 N06 UCM sing 385 n y 
C07 C12 UCM sing 386 n y 
N06 C14 UCM sing 387 n y 
N06 C05 UCM sing 388 n n 
C14 C13 UCM doub 389 n y 
C14 C19 UCM sing 390 n y 
C13 C22 UCM sing 391 n y 
C13 C12 UCM sing 392 n y 
C22 C21 UCM doub 393 n y 
C22 H22 UCM sing 394 n n 
C21 C20 UCM sing 395 n y 
C21 H21 UCM sing 396 n n 
C20 C19 UCM doub 397 n y 
C20 H20 UCM sing 398 n n 
C19 H19 UCM sing 399 n n 
C12 C11 UCM doub 400 n y 
C11 C27 UCM sing 401 n n 
C27 O28 UCM doub 402 n n 
C05 O01 UCM sing 403 n n 
C05 C04 UCM sing 404 n n 
C05 H05 UCM sing 405 n n 
O01 C02 UCM sing 406 n n 
C02 C03 UCM sing 407 n n 
C02 H02 UCM sing 408 n n 
C03 C04 UCM sing 409 n n 
C03 H031 UCM sing 410 n n 
C03 H032 UCM sing 411 n n 
C04 H041 UCM sing 412 n n 
C04 H042 UCM sing 413 n n 
#
_atom_sites.entry_id                     1NVS 
_atom_sites.fract_transf_matrix[1][1]    0.022206 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001635 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015175 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017242 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SO4 A 1 500 500 SO4 SO4 . 
D 4 UCM A 1 400 400 UCM UNK . 
E 5 HOH A 1 331 31 HOH TIP . 
E 5 HOH A 2 341 41 HOH TIP . 
E 5 HOH A 3 401 101 HOH TIP . 
E 5 HOH A 4 411 311 HOH TIP . 
E 5 HOH A 5 441 141 HOH TIP . 
E 5 HOH A 6 451 151 HOH TIP . 
E 5 HOH A 7 471 71 HOH TIP . 
E 5 HOH A 8 551 551 HOH TIP . 
E 5 HOH A 9 571 571 HOH TIP . 
E 5 HOH A 10 591 591 HOH TIP . 
E 5 HOH A 11 601 601 HOH TIP . 
E 5 HOH A 12 641 641 HOH TIP . 
E 5 HOH A 13 642 642 HOH TIP . 
E 5 HOH A 14 651 651 HOH TIP . 
E 5 HOH A 15 652 652 HOH TIP . 
E 5 HOH A 16 661 661 HOH TIP . 
E 5 HOH A 17 681 681 HOH TIP . 
E 5 HOH A 18 861 861 HOH TIP . 
E 5 HOH A 19 881 881 HOH TIP . 
E 5 HOH A 20 882 882 HOH TIP . 
E 5 HOH A 21 911 911 HOH TIP . 
E 5 HOH A 22 912 912 HOH TIP . 
E 5 HOH A 23 951 951 HOH TIP . 
E 5 HOH A 24 1041 1041 HOH TIP . 
E 5 HOH A 25 1061 1061 HOH TIP . 
E 5 HOH A 26 1062 1062 HOH TIP . 
E 5 HOH A 27 1091 1091 HOH TIP . 
E 5 HOH A 28 1121 1121 HOH TIP . 
E 5 HOH A 29 1131 1131 HOH TIP . 
E 5 HOH A 30 1191 1191 HOH TIP . 
E 5 HOH A 31 1201 1201 HOH TIP . 
E 5 HOH A 32 1271 1271 HOH TIP . 
E 5 HOH A 33 1311 1311 HOH TIP . 
E 5 HOH A 34 1391 1391 HOH TIP . 
E 5 HOH A 35 1411 1411 HOH TIP . 
E 5 HOH A 36 1481 1481 HOH TIP . 
E 5 HOH A 37 1511 1511 HOH TIP . 
E 5 HOH A 38 1521 1521 HOH TIP . 
E 5 HOH A 39 1541 1541 HOH TIP . 
E 5 HOH A 40 1561 1561 HOH TIP . 
E 5 HOH A 41 1562 1562 HOH TIP . 
E 5 HOH A 42 1591 1591 HOH TIP . 
E 5 HOH A 43 1621 1621 HOH TIP . 
E 5 HOH A 44 1631 1631 HOH TIP . 
E 5 HOH A 45 1651 1651 HOH TIP . 
E 5 HOH A 46 1661 1661 HOH TIP . 
E 5 HOH A 47 1671 1671 HOH TIP . 
E 5 HOH A 48 1672 1672 HOH TIP . 
E 5 HOH A 49 1681 1681 HOH TIP . 
E 5 HOH A 50 1682 1682 HOH TIP . 
E 5 HOH A 51 1691 1691 HOH TIP . 
E 5 HOH A 52 1701 1701 HOH TIP . 
E 5 HOH A 53 1751 1751 HOH TIP . 
E 5 HOH A 54 1821 1821 HOH TIP . 
E 5 HOH A 55 1831 1831 HOH TIP . 
E 5 HOH A 56 1851 1851 HOH TIP . 
E 5 HOH A 57 1852 1852 HOH TIP . 
E 5 HOH A 58 1871 1871 HOH TIP . 
E 5 HOH A 59 1931 1931 HOH TIP . 
E 5 HOH A 60 2021 2021 HOH TIP . 
E 5 HOH A 61 2041 2041 HOH TIP . 
E 5 HOH A 62 2061 2061 HOH TIP . 
E 5 HOH A 63 2062 2062 HOH TIP . 
E 5 HOH A 64 2071 2071 HOH TIP . 
E 5 HOH A 65 2081 2081 HOH TIP . 
E 5 HOH A 66 2091 2091 HOH TIP . 
E 5 HOH A 67 2101 2101 HOH TIP . 
E 5 HOH A 68 2171 2171 HOH TIP . 
E 5 HOH A 69 2181 2181 HOH TIP . 
E 5 HOH A 70 2231 2231 HOH TIP . 
E 5 HOH A 71 2291 2291 HOH TIP . 
E 5 HOH A 72 2481 2481 HOH TIP . 
E 5 HOH A 73 2491 2491 HOH TIP . 
E 5 HOH A 74 2521 2521 HOH TIP . 
E 5 HOH A 75 2531 2531 HOH TIP . 
E 5 HOH A 76 2541 2541 HOH TIP . 
E 5 HOH A 77 2542 2542 HOH TIP . 
E 5 HOH A 78 2561 2561 HOH TIP . 
E 5 HOH A 79 2621 2621 HOH TIP . 
E 5 HOH A 80 2631 2631 HOH TIP . 
E 5 HOH A 81 2691 2691 HOH TIP . 
E 5 HOH A 82 2701 2701 HOH TIP . 
E 5 HOH A 83 3001 1 HOH TIP . 
E 5 HOH A 84 3002 2 HOH TIP . 
E 5 HOH A 85 3003 3 HOH TIP . 
E 5 HOH A 86 3004 4 HOH TIP . 
E 5 HOH A 87 3005 5 HOH TIP . 
E 5 HOH A 88 3006 6 HOH TIP . 
E 5 HOH A 89 3007 7 HOH TIP . 
E 5 HOH A 90 3008 8 HOH TIP . 
E 5 HOH A 91 3009 9 HOH TIP . 
E 5 HOH A 92 3010 10 HOH TIP . 
E 5 HOH A 93 3011 11 HOH TIP . 
E 5 HOH A 94 3012 12 HOH TIP . 
E 5 HOH A 95 3013 13 HOH TIP . 
E 5 HOH A 96 3014 14 HOH TIP . 
E 5 HOH A 97 3015 15 HOH TIP . 
E 5 HOH A 98 3016 16 HOH TIP . 
E 5 HOH A 99 3017 17 HOH TIP . 
E 5 HOH A 100 3018 18 HOH TIP . 
E 5 HOH A 101 3019 19 HOH TIP . 
E 5 HOH A 102 3020 20 HOH TIP . 
E 5 HOH A 103 3021 21 HOH TIP . 
E 5 HOH A 104 3022 22 HOH TIP . 
E 5 HOH A 105 3023 23 HOH TIP . 
E 5 HOH A 106 3024 24 HOH TIP . 
E 5 HOH A 107 3025 25 HOH TIP . 
E 5 HOH A 108 3026 26 HOH TIP . 
E 5 HOH A 109 3027 27 HOH TIP . 
E 5 HOH A 110 3028 28 HOH TIP . 
E 5 HOH A 111 3029 29 HOH TIP . 
E 5 HOH A 112 3030 30 HOH TIP . 
E 5 HOH A 113 3031 31 HOH TIP . 
E 5 HOH A 114 3032 32 HOH TIP . 
E 5 HOH A 115 3033 33 HOH TIP . 
E 5 HOH A 116 3034 34 HOH TIP . 
E 5 HOH A 117 3035 35 HOH TIP . 
E 5 HOH A 118 3036 36 HOH TIP . 
E 5 HOH A 119 3037 37 HOH TIP . 
E 5 HOH A 120 3038 38 HOH TIP . 
E 5 HOH A 121 3039 39 HOH TIP . 
E 5 HOH A 122 3040 40 HOH TIP . 
E 5 HOH A 123 3041 41 HOH TIP . 
E 5 HOH A 124 3042 42 HOH TIP . 
E 5 HOH A 125 3043 43 HOH TIP . 
E 5 HOH A 126 3044 44 HOH TIP . 
E 5 HOH A 127 3046 46 HOH TIP . 
E 5 HOH A 128 3047 47 HOH TIP . 
E 5 HOH A 129 3048 48 HOH TIP . 
E 5 HOH A 130 3049 49 HOH TIP . 
E 5 HOH A 131 3050 50 HOH TIP . 
E 5 HOH A 132 3051 51 HOH TIP . 
E 5 HOH A 133 3052 52 HOH TIP . 
E 5 HOH A 134 3053 53 HOH TIP . 
E 5 HOH A 135 3054 54 HOH TIP . 
E 5 HOH A 136 3055 55 HOH TIP . 
E 5 HOH A 137 3056 56 HOH TIP . 
E 5 HOH A 138 3057 57 HOH TIP . 
E 5 HOH A 139 3058 58 HOH TIP . 
E 5 HOH A 140 3059 59 HOH TIP . 
E 5 HOH A 141 3060 60 HOH TIP . 
E 5 HOH A 142 3061 61 HOH TIP . 
E 5 HOH A 143 3062 62 HOH TIP . 
E 5 HOH A 144 3063 63 HOH TIP . 
E 5 HOH A 145 3064 64 HOH TIP . 
E 5 HOH A 146 3065 65 HOH TIP . 
E 5 HOH A 147 3066 66 HOH TIP . 
E 5 HOH A 148 3067 67 HOH TIP . 
E 5 HOH A 149 3068 68 HOH TIP . 
E 5 HOH A 150 3069 69 HOH TIP . 
E 5 HOH A 151 3070 70 HOH TIP . 
E 5 HOH A 152 3071 71 HOH TIP . 
E 5 HOH A 153 3072 72 HOH TIP . 
E 5 HOH A 154 3073 73 HOH TIP . 
E 5 HOH A 155 3074 74 HOH TIP . 
E 5 HOH A 156 3075 75 HOH TIP . 
E 5 HOH A 157 3076 76 HOH TIP . 
E 5 HOH A 158 3077 77 HOH TIP . 
E 5 HOH A 159 3078 78 HOH TIP . 
E 5 HOH A 160 3079 79 HOH TIP . 
E 5 HOH A 161 3080 80 HOH TIP . 
E 5 HOH A 162 3081 81 HOH TIP . 
E 5 HOH A 163 3082 82 HOH TIP . 
E 5 HOH A 164 3083 83 HOH TIP . 
E 5 HOH A 165 3084 84 HOH TIP . 
E 5 HOH A 166 3085 85 HOH TIP . 
E 5 HOH A 167 3086 86 HOH TIP . 
E 5 HOH A 168 3087 87 HOH TIP . 
E 5 HOH A 169 3088 88 HOH TIP . 
E 5 HOH A 170 3089 89 HOH TIP . 
E 5 HOH A 171 3090 90 HOH TIP . 
E 5 HOH A 172 3091 91 HOH TIP . 
E 5 HOH A 173 3092 92 HOH TIP . 
E 5 HOH A 174 3093 93 HOH TIP . 
E 5 HOH A 175 3094 94 HOH TIP . 
E 5 HOH A 176 3095 95 HOH TIP . 
E 5 HOH A 177 3096 96 HOH TIP . 
E 5 HOH A 178 3097 97 HOH TIP . 
E 5 HOH A 179 3098 98 HOH TIP . 
E 5 HOH A 180 3099 99 HOH TIP . 
E 5 HOH A 181 3100 100 HOH TIP . 
E 5 HOH A 182 3101 101 HOH TIP . 
E 5 HOH A 183 3102 102 HOH TIP . 
F 5 HOH B 1 3045 45 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N18 UCM . . . D 4 6.337 10.263 19.453 1 46.22 ? N18 UCM 400 A 1 
HETATM 2 C C29 UCM . . . D 4 4.927 9.693 19.487 1 46.38 ? C29 UCM 400 A 1 
HETATM 3 O O30 UCM . . . D 4 3.987 10.213 20.068 1 44.71 ? O30 UCM 400 A 1 
HETATM 4 C C10 UCM . . . D 4 4.88 8.445 18.722 1 46.94 ? C10 UCM 400 A 1 
HETATM 5 C C09 UCM . . . D 4 3.783 7.553 18.464 1 47.83 ? C09 UCM 400 A 1 
HETATM 6 C C15 UCM . . . D 4 2.387 7.476 18.799 1 48.32 ? C15 UCM 400 A 1 
HETATM 7 C C16 UCM . . . D 4 1.874 6.292 18.193 1 48.81 ? C16 UCM 400 A 1 
HETATM 8 C C34 UCM . . . D 4 0.49 5.922 18.335 1 48.81 ? C34 UCM 400 A 1 
HETATM 9 C C33 UCM . . . D 4 -0.405 6.739 19.091 1 48.83 ? C33 UCM 400 A 1 
HETATM 10 C C32 UCM . . . D 4 0.085 7.928 19.709 1 48.49 ? C32 UCM 400 A 1 
HETATM 11 C C31 UCM . . . D 4 1.46 8.287 19.56 1 48.07 ? C31 UCM 400 A 1 
HETATM 12 N N17 UCM . . . D 4 2.928 5.675 17.519 1 49.22 ? N17 UCM 400 A 1 
HETATM 13 C C08 UCM . . . D 4 4.093 6.417 17.669 1 48.59 ? C08 UCM 400 A 1 
HETATM 14 C C07 UCM . . . D 4 5.364 6.165 17.16 1 48.61 ? C07 UCM 400 A 1 
HETATM 15 N N06 UCM . . . D 4 5.8 5.103 16.376 1 49.11 ? N06 UCM 400 A 1 
HETATM 16 C C14 UCM . . . D 4 7.148 5.239 16.086 1 48.91 ? C14 UCM 400 A 1 
HETATM 17 C C13 UCM . . . D 4 7.602 6.439 16.708 1 48.58 ? C13 UCM 400 A 1 
HETATM 18 C C22 UCM . . . D 4 8.995 6.787 16.534 1 48.7 ? C22 UCM 400 A 1 
HETATM 19 C C21 UCM . . . D 4 9.89 5.978 15.776 1 48.43 ? C21 UCM 400 A 1 
HETATM 20 C C20 UCM . . . D 4 9.412 4.783 15.167 1 48.85 ? C20 UCM 400 A 1 
HETATM 21 C C19 UCM . . . D 4 8.042 4.413 15.319 1 48.87 ? C19 UCM 400 A 1 
HETATM 22 C C12 UCM . . . D 4 6.474 7.015 17.386 1 47.98 ? C12 UCM 400 A 1 
HETATM 23 C C11 UCM . . . D 4 6.208 8.18 18.189 1 47.33 ? C11 UCM 400 A 1 
HETATM 24 C C27 UCM . . . D 4 7.098 9.256 18.615 1 46.77 ? C27 UCM 400 A 1 
HETATM 25 O O28 UCM . . . D 4 8.28 9.347 18.344 1 47.68 ? O28 UCM 400 A 1 
HETATM 26 C C05 UCM . . . D 4 4.959 3.974 15.906 1 49.5 ? C05 UCM 400 A 1 
HETATM 27 O O01 UCM . . . D 4 3.999 3.6 16.907 1 49.85 ? O01 UCM 400 A 1 
HETATM 28 C C02 UCM . . . D 4 2.814 4.402 16.753 1 49.57 ? C02 UCM 400 A 1 
HETATM 29 C C03 UCM . . . D 4 2.722 4.673 15.246 1 49.98 ? C03 UCM 400 A 1 
HETATM 30 C C04 UCM . . . D 4 4.119 4.391 14.692 1 50.05 ? C04 UCM 400 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           415 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           30 
#