data_1NVT # _model_server_result.job_id 2SW-rnzIVsVPFpp6EM3xmg _model_server_result.datetime_utc '2025-02-18 09:38:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nvt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":290}' # _entry.id 1NVT # _exptl.entry_id 1NVT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NVT _cell.length_a 74.65 _cell.length_b 75.62 _cell.length_c 118.79 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NVT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 19 A HIS 19 1_555 C ZN ZN . A ZN 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc2 B OE2 GLU 22 B GLU 22 1_555 E ZN ZN . B ZN 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc3 B ND1 HIS 23 B HIS 23 1_555 E ZN ZN . B ZN 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1NVT _atom_sites.fract_transf_matrix[1][1] 0.013396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 290 290 ZN ZN . D 3 NAP A 1 288 288 NAP NAP . E 2 ZN B 1 291 291 ZN ZN . F 3 NAP B 1 289 289 NAP NAP . G 4 HOH A 1 291 2 HOH HOH . G 4 HOH A 2 292 7 HOH HOH . G 4 HOH A 3 293 8 HOH HOH . G 4 HOH A 4 294 9 HOH HOH . G 4 HOH A 5 295 14 HOH HOH . G 4 HOH A 6 296 19 HOH HOH . G 4 HOH A 7 297 20 HOH HOH . G 4 HOH A 8 298 21 HOH HOH . G 4 HOH A 9 299 24 HOH HOH . G 4 HOH A 10 300 30 HOH HOH . G 4 HOH A 11 301 32 HOH HOH . G 4 HOH A 12 302 34 HOH HOH . G 4 HOH A 13 303 35 HOH HOH . G 4 HOH A 14 304 36 HOH HOH . G 4 HOH A 15 305 40 HOH HOH . G 4 HOH A 16 306 50 HOH HOH . G 4 HOH A 17 307 54 HOH HOH . G 4 HOH A 18 308 57 HOH HOH . G 4 HOH A 19 309 61 HOH HOH . G 4 HOH A 20 310 63 HOH HOH . G 4 HOH A 21 311 65 HOH HOH . G 4 HOH A 22 312 66 HOH HOH . G 4 HOH A 23 313 76 HOH HOH . G 4 HOH A 24 314 79 HOH HOH . G 4 HOH A 25 315 80 HOH HOH . G 4 HOH A 26 316 82 HOH HOH . G 4 HOH A 27 317 94 HOH HOH . G 4 HOH A 28 318 97 HOH HOH . G 4 HOH A 29 319 101 HOH HOH . G 4 HOH A 30 320 102 HOH HOH . G 4 HOH A 31 321 104 HOH HOH . G 4 HOH A 32 322 107 HOH HOH . G 4 HOH A 33 323 108 HOH HOH . G 4 HOH A 34 324 109 HOH HOH . G 4 HOH A 35 325 113 HOH HOH . G 4 HOH A 36 326 115 HOH HOH . G 4 HOH A 37 327 117 HOH HOH . G 4 HOH A 38 328 119 HOH HOH . G 4 HOH A 39 329 121 HOH HOH . G 4 HOH A 40 330 125 HOH HOH . G 4 HOH A 41 331 126 HOH HOH . G 4 HOH A 42 332 127 HOH HOH . G 4 HOH A 43 333 133 HOH HOH . G 4 HOH A 44 334 134 HOH HOH . G 4 HOH A 45 335 139 HOH HOH . H 4 HOH B 1 292 1 HOH HOH . H 4 HOH B 2 293 3 HOH HOH . H 4 HOH B 3 294 4 HOH HOH . H 4 HOH B 4 295 5 HOH HOH . H 4 HOH B 5 296 6 HOH HOH . H 4 HOH B 6 297 10 HOH HOH . H 4 HOH B 7 298 11 HOH HOH . H 4 HOH B 8 299 12 HOH HOH . H 4 HOH B 9 300 13 HOH HOH . H 4 HOH B 10 301 15 HOH HOH . H 4 HOH B 11 302 16 HOH HOH . H 4 HOH B 12 303 17 HOH HOH . H 4 HOH B 13 304 18 HOH HOH . H 4 HOH B 14 305 22 HOH HOH . H 4 HOH B 15 306 23 HOH HOH . H 4 HOH B 16 307 25 HOH HOH . H 4 HOH B 17 308 26 HOH HOH . H 4 HOH B 18 309 27 HOH HOH . H 4 HOH B 19 310 28 HOH HOH . H 4 HOH B 20 311 29 HOH HOH . H 4 HOH B 21 312 31 HOH HOH . H 4 HOH B 22 313 33 HOH HOH . H 4 HOH B 23 314 37 HOH HOH . H 4 HOH B 24 315 38 HOH HOH . H 4 HOH B 25 316 39 HOH HOH . H 4 HOH B 26 317 41 HOH HOH . H 4 HOH B 27 318 42 HOH HOH . H 4 HOH B 28 319 43 HOH HOH . H 4 HOH B 29 320 44 HOH HOH . H 4 HOH B 30 321 45 HOH HOH . H 4 HOH B 31 322 46 HOH HOH . H 4 HOH B 32 323 47 HOH HOH . H 4 HOH B 33 324 48 HOH HOH . H 4 HOH B 34 325 49 HOH HOH . H 4 HOH B 35 326 51 HOH HOH . H 4 HOH B 36 327 52 HOH HOH . H 4 HOH B 37 328 53 HOH HOH . H 4 HOH B 38 329 55 HOH HOH . H 4 HOH B 39 330 56 HOH HOH . H 4 HOH B 40 331 58 HOH HOH . H 4 HOH B 41 332 59 HOH HOH . H 4 HOH B 42 333 60 HOH HOH . H 4 HOH B 43 334 62 HOH HOH . H 4 HOH B 44 335 64 HOH HOH . H 4 HOH B 45 336 67 HOH HOH . H 4 HOH B 46 337 68 HOH HOH . H 4 HOH B 47 338 69 HOH HOH . H 4 HOH B 48 339 70 HOH HOH . H 4 HOH B 49 340 71 HOH HOH . H 4 HOH B 50 341 72 HOH HOH . H 4 HOH B 51 342 74 HOH HOH . H 4 HOH B 52 343 75 HOH HOH . H 4 HOH B 53 344 77 HOH HOH . H 4 HOH B 54 345 78 HOH HOH . H 4 HOH B 55 346 81 HOH HOH . H 4 HOH B 56 347 83 HOH HOH . H 4 HOH B 57 348 85 HOH HOH . H 4 HOH B 58 349 86 HOH HOH . H 4 HOH B 59 350 87 HOH HOH . H 4 HOH B 60 351 88 HOH HOH . H 4 HOH B 61 352 89 HOH HOH . H 4 HOH B 62 353 90 HOH HOH . H 4 HOH B 63 354 91 HOH HOH . H 4 HOH B 64 355 92 HOH HOH . H 4 HOH B 65 356 93 HOH HOH . H 4 HOH B 66 357 95 HOH HOH . H 4 HOH B 67 358 96 HOH HOH . H 4 HOH B 68 359 98 HOH HOH . H 4 HOH B 69 360 99 HOH HOH . H 4 HOH B 70 361 100 HOH HOH . H 4 HOH B 71 362 103 HOH HOH . H 4 HOH B 72 363 105 HOH HOH . H 4 HOH B 73 364 106 HOH HOH . H 4 HOH B 74 365 110 HOH HOH . H 4 HOH B 75 366 111 HOH HOH . H 4 HOH B 76 367 112 HOH HOH . H 4 HOH B 77 368 114 HOH HOH . H 4 HOH B 78 369 116 HOH HOH . H 4 HOH B 79 370 118 HOH HOH . H 4 HOH B 80 371 120 HOH HOH . H 4 HOH B 81 372 122 HOH HOH . H 4 HOH B 82 373 123 HOH HOH . H 4 HOH B 83 374 124 HOH HOH . H 4 HOH B 84 375 128 HOH HOH . H 4 HOH B 85 376 129 HOH HOH . H 4 HOH B 86 377 130 HOH HOH . H 4 HOH B 87 378 131 HOH HOH . H 4 HOH B 88 379 132 HOH HOH . H 4 HOH B 89 380 136 HOH HOH . H 4 HOH B 90 381 137 HOH HOH . H 4 HOH B 91 382 140 HOH HOH . H 4 HOH B 92 383 141 HOH HOH . H 4 HOH B 93 384 142 HOH HOH . H 4 HOH B 94 385 143 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 8.629 _atom_site.Cartn_y 6.334 _atom_site.Cartn_z 20.607 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 290 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 85 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 1057 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #