data_1NVY # _model_server_result.job_id i_fiX9APOlkwtY1PQccd-A _model_server_result.datetime_utc '2025-03-06 08:26:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nvy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":102}' # _entry.id 1NVY # _exptl.entry_id 1NVY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 87.62 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'STRONTIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.11 _cell.angle_gamma 90 _cell.entry_id 1NVY _cell.length_a 63.734 _cell.length_b 25.32 _cell.length_c 36.493 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NVY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 51.186846 0 34.268177 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C SR SR . A SR 103 1_555 H O HOH . A HOH 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc2 C SR SR . A SR 103 1_555 H O HOH . A HOH 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc3 C SR SR . A SR 103 1_555 H O HOH . A HOH 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc4 C SR SR . A SR 103 1_555 I O HOH . B HOH 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc5 C SR SR . A SR 103 1_555 I O HOH . B HOH 492 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc6 C SR SR . A SR 103 1_555 I O HOH . B HOH 493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc7 C SR SR . A SR 103 1_555 I O HOH . B HOH 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc8 D SR SR . A SR 104 1_555 H O HOH . A HOH 496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc9 D SR SR . A SR 104 1_555 H O HOH . A HOH 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc10 D SR SR . A SR 104 1_555 H O HOH . A HOH 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc11 D SR SR . A SR 104 1_555 H O HOH . A HOH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc12 D SR SR . A SR 104 1_555 I O HOH . B HOH 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc13 D SR SR . A SR 104 1_555 I O HOH . B HOH 495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc14 D SR SR . A SR 104 1_555 I O HOH . B HOH 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc15 E SR SR . B SR 101 1_555 I O HOH . B HOH 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc16 E SR SR . B SR 101 1_555 I O HOH . B HOH 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc17 E SR SR . B SR 101 1_555 I O HOH . B HOH 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc18 E SR SR . B SR 101 1_555 I O HOH . B HOH 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc19 E SR SR . B SR 101 1_555 I O HOH . B HOH 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc20 E SR SR . B SR 101 1_555 I O HOH . B HOH 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc21 E SR SR . B SR 101 1_555 I O HOH . B HOH 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc22 E SR SR . B SR 101 1_555 I O HOH . B HOH 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc23 F SR SR . B SR 102 1_555 I O HOH . B HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc24 F SR SR . B SR 102 1_555 I O HOH . B HOH 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc25 F SR SR . B SR 102 1_555 I O HOH . B HOH 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc26 F SR SR . B SR 102 1_555 I O HOH . B HOH 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc27 F SR SR . B SR 102 1_555 I O HOH . B HOH 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc28 F SR SR . B SR 102 1_555 I O HOH . B HOH 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc29 F SR SR . B SR 102 1_555 I O HOH . B HOH 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc30 F SR SR . B SR 102 1_555 I O HOH . B HOH 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc31 G SR SR . B SR 105 1_555 I O HOH . B HOH 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc32 G SR SR . B SR 105 1_555 I O HOH . B HOH 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc33 G SR SR . B SR 105 1_555 I O HOH . B HOH 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc34 G SR SR . B SR 105 1_555 I O HOH . B HOH 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc35 G SR SR . B SR 105 1_555 I O HOH . B HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc36 G SR SR . B SR 105 1_555 I O HOH . B HOH 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc37 G SR SR . B SR 105 1_555 I O HOH . B HOH 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? hydrog WATSON-CRICK hydrog1 A N3 DT 1 A DT 1 1_555 B N1 DA 10 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A O4 DT 1 A DT 1 1_555 B N6 DA 10 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 DC 2 A DC 2 1_555 B N1 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N4 DC 2 A DC 2 1_555 B O6 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O2 DC 2 A DC 2 1_555 B N2 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DG 3 A DG 3 1_555 B N3 DC 8 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 DG 3 A DG 3 1_555 B O2 DC 8 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 DG 3 A DG 3 1_555 B N4 DC 8 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DG 4 A DG 4 1_555 B N3 DC 7 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N2 DG 4 A DG 4 1_555 B O2 DC 7 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O6 DG 4 A DG 4 1_555 B N4 DC 7 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DT 5 A DT 5 1_555 B N1 DA 6 B DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O4 DT 5 A DT 5 1_555 B N6 DA 6 B DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DA 6 A DA 6 1_555 B N3 DT 5 B DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N6 DA 6 A DA 6 1_555 B O4 DT 5 B DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Sr 2' _chem_comp.formula_weight 87.62 _chem_comp.id SR _chem_comp.mon_nstd_flag . _chem_comp.name 'STRONTIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1NVY _atom_sites.fract_transf_matrix[1][1] 0.01569 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005744 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.039494 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029181 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SR A 1 103 1 SR SR . D 2 SR A 1 104 1 SR SR . E 2 SR B 1 101 1 SR SR . F 2 SR B 1 102 1 SR SR . G 2 SR B 1 105 1 SR SR . H 3 HOH A 1 489 489 HOH HOH . H 3 HOH A 2 490 490 HOH HOH . H 3 HOH A 3 491 491 HOH HOH . H 3 HOH A 4 496 496 HOH HOH . H 3 HOH A 5 497 497 HOH HOH . H 3 HOH A 6 499 499 HOH HOH . H 3 HOH A 7 500 500 HOH HOH . H 3 HOH A 8 502 502 HOH HOH . H 3 HOH A 9 503 503 HOH HOH . H 3 HOH A 10 504 504 HOH HOH . H 3 HOH A 11 505 505 HOH HOH . H 3 HOH A 12 513 513 HOH HOH . H 3 HOH A 13 514 514 HOH HOH . H 3 HOH A 14 517 517 HOH HOH . H 3 HOH A 15 520 520 HOH HOH . H 3 HOH A 16 523 523 HOH HOH . H 3 HOH A 17 525 525 HOH HOH . H 3 HOH A 18 527 527 HOH HOH . H 3 HOH A 19 530 530 HOH HOH . H 3 HOH A 20 533 533 HOH HOH . H 3 HOH A 21 538 538 HOH HOH . H 3 HOH A 22 540 540 HOH HOH . H 3 HOH A 23 543 543 HOH HOH . H 3 HOH A 24 545 545 HOH HOH . H 3 HOH A 25 546 546 HOH HOH . H 3 HOH A 26 550 550 HOH HOH . H 3 HOH A 27 551 551 HOH HOH . H 3 HOH A 28 553 553 HOH HOH . H 3 HOH A 29 559 559 HOH HOH . H 3 HOH A 30 563 563 HOH HOH . H 3 HOH A 31 564 564 HOH HOH . H 3 HOH A 32 565 565 HOH HOH . H 3 HOH A 33 569 569 HOH HOH . H 3 HOH A 34 636 636 HOH HOH . I 3 HOH B 1 466 466 HOH HOH . I 3 HOH B 2 467 467 HOH HOH . I 3 HOH B 3 468 468 HOH HOH . I 3 HOH B 4 469 469 HOH HOH . I 3 HOH B 5 470 470 HOH HOH . I 3 HOH B 6 471 471 HOH HOH . I 3 HOH B 7 472 472 HOH HOH . I 3 HOH B 8 473 473 HOH HOH . I 3 HOH B 9 474 474 HOH HOH . I 3 HOH B 10 475 475 HOH HOH . I 3 HOH B 11 476 476 HOH HOH . I 3 HOH B 12 477 477 HOH HOH . I 3 HOH B 13 478 478 HOH HOH . I 3 HOH B 14 479 479 HOH HOH . I 3 HOH B 15 480 480 HOH HOH . I 3 HOH B 16 481 481 HOH HOH . I 3 HOH B 17 482 482 HOH HOH . I 3 HOH B 18 483 483 HOH HOH . I 3 HOH B 19 484 484 HOH HOH . I 3 HOH B 20 485 485 HOH HOH . I 3 HOH B 21 486 486 HOH HOH . I 3 HOH B 22 487 487 HOH HOH . I 3 HOH B 23 488 488 HOH HOH . I 3 HOH B 24 492 492 HOH HOH . I 3 HOH B 25 493 493 HOH HOH . I 3 HOH B 26 494 494 HOH HOH . I 3 HOH B 27 495 495 HOH HOH . I 3 HOH B 28 498 498 HOH HOH . I 3 HOH B 29 501 501 HOH HOH . I 3 HOH B 30 506 506 HOH HOH . I 3 HOH B 31 508 508 HOH HOH . I 3 HOH B 32 509 509 HOH HOH . I 3 HOH B 33 510 510 HOH HOH . I 3 HOH B 34 511 511 HOH HOH . I 3 HOH B 35 512 512 HOH HOH . I 3 HOH B 36 515 515 HOH HOH . I 3 HOH B 37 516 516 HOH HOH . I 3 HOH B 38 518 518 HOH HOH . I 3 HOH B 39 519 519 HOH HOH . I 3 HOH B 40 521 521 HOH HOH . I 3 HOH B 41 522 522 HOH HOH . I 3 HOH B 42 524 524 HOH HOH . I 3 HOH B 43 526 526 HOH HOH . I 3 HOH B 44 528 528 HOH HOH . I 3 HOH B 45 529 529 HOH HOH . I 3 HOH B 46 531 531 HOH HOH . I 3 HOH B 47 532 532 HOH HOH . I 3 HOH B 48 534 534 HOH HOH . I 3 HOH B 49 535 535 HOH HOH . I 3 HOH B 50 536 536 HOH HOH . I 3 HOH B 51 537 537 HOH HOH . I 3 HOH B 52 539 539 HOH HOH . I 3 HOH B 53 541 541 HOH HOH . I 3 HOH B 54 542 542 HOH HOH . I 3 HOH B 55 544 544 HOH HOH . I 3 HOH B 56 547 547 HOH HOH . I 3 HOH B 57 548 548 HOH HOH . I 3 HOH B 58 549 549 HOH HOH . I 3 HOH B 59 554 554 HOH HOH . I 3 HOH B 60 555 555 HOH HOH . I 3 HOH B 61 556 556 HOH HOH . I 3 HOH B 62 557 557 HOH HOH . I 3 HOH B 63 558 558 HOH HOH . I 3 HOH B 64 561 561 HOH HOH . I 3 HOH B 65 562 562 HOH HOH . I 3 HOH B 66 566 566 HOH HOH . I 3 HOH B 67 567 567 HOH HOH . I 3 HOH B 68 568 568 HOH HOH . I 3 HOH B 69 571 571 HOH HOH . I 3 HOH B 70 637 637 HOH HOH . I 3 HOH B 71 638 638 HOH HOH . I 3 HOH B 72 639 639 HOH HOH . I 3 HOH B 73 640 640 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol SR _atom_site.label_atom_id SR _atom_site.label_comp_id SR _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 22.984 _atom_site.Cartn_y 3.302 _atom_site.Cartn_z 5.083 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id SR _atom_site.auth_comp_id SR _atom_site.auth_seq_id 102 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #