data_1NW3 # _model_server_result.job_id 1DEzY17ssHv5GQvxXpl7kA _model_server_result.datetime_utc '2024-11-07 18:55:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nw3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":500}' # _entry.id 1NW3 # _exptl.entry_id 1NW3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1NW3 _cell.length_a 152.8 _cell.length_b 152.8 _cell.length_c 50.81 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NW3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 283 n n N HN1 SAM sing 284 n n N HN2 SAM sing 285 n n CA C SAM sing 286 n n CA CB SAM sing 287 n n CA HA SAM sing 288 n n C O SAM doub 289 n n C OXT SAM sing 290 n n CB CG SAM sing 291 n n CB HB1 SAM sing 292 n n CB HB2 SAM sing 293 n n CG SD SAM sing 294 n n CG HG1 SAM sing 295 n n CG HG2 SAM sing 296 n n SD CE SAM sing 297 n n SD C5' SAM sing 298 n n CE HE1 SAM sing 299 n n CE HE2 SAM sing 300 n n CE HE3 SAM sing 301 n n C5' C4' SAM sing 302 n n C5' "H5'1" SAM sing 303 n n C5' "H5'2" SAM sing 304 n n C4' O4' SAM sing 305 n n C4' C3' SAM sing 306 n n C4' H4' SAM sing 307 n n O4' C1' SAM sing 308 n n C3' O3' SAM sing 309 n n C3' C2' SAM sing 310 n n C3' H3' SAM sing 311 n n O3' HO3' SAM sing 312 n n C2' O2' SAM sing 313 n n C2' C1' SAM sing 314 n n C2' H2' SAM sing 315 n n O2' HO2' SAM sing 316 n n C1' N9 SAM sing 317 n n C1' H1' SAM sing 318 n n N9 C8 SAM sing 319 n y N9 C4 SAM sing 320 n y C8 N7 SAM doub 321 n y C8 H8 SAM sing 322 n n N7 C5 SAM sing 323 n y C5 C6 SAM sing 324 n y C5 C4 SAM doub 325 n y C6 N6 SAM sing 326 n n C6 N1 SAM doub 327 n y N6 HN61 SAM sing 328 n n N6 HN62 SAM sing 329 n n N1 C2 SAM sing 330 n y C2 N3 SAM doub 331 n y C2 H2 SAM sing 332 n n N3 C4 SAM sing 333 n y # _atom_sites.entry_id 1NW3 _atom_sites.fract_transf_matrix[1][1] 0.006545 _atom_sites.fract_transf_matrix[1][2] 0.003778 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007557 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019681 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 600 600 ACT ACT . C 3 SO4 A 1 601 601 SO4 SO4 . D 3 SO4 A 1 602 602 SO4 SO4 . E 4 SAM A 1 500 500 SAM SAM . F 5 HOH A 1 1000 1000 HOH HOH . F 5 HOH A 2 1001 1001 HOH HOH . F 5 HOH A 3 1002 1002 HOH HOH . F 5 HOH A 4 1003 1003 HOH HOH . F 5 HOH A 5 1004 1004 HOH HOH . F 5 HOH A 6 1005 1005 HOH HOH . F 5 HOH A 7 1006 1006 HOH HOH . F 5 HOH A 8 1007 1007 HOH HOH . F 5 HOH A 9 1008 1008 HOH HOH . F 5 HOH A 10 1009 1009 HOH HOH . F 5 HOH A 11 1010 1010 HOH HOH . F 5 HOH A 12 1011 1011 HOH HOH . F 5 HOH A 13 1012 1012 HOH HOH . F 5 HOH A 14 1013 1013 HOH HOH . F 5 HOH A 15 1014 1014 HOH HOH . F 5 HOH A 16 1015 1015 HOH HOH . F 5 HOH A 17 1016 1016 HOH HOH . F 5 HOH A 18 1017 1017 HOH HOH . F 5 HOH A 19 1018 1018 HOH HOH . F 5 HOH A 20 1019 1019 HOH HOH . F 5 HOH A 21 1020 1020 HOH HOH . F 5 HOH A 22 1021 1021 HOH HOH . F 5 HOH A 23 1022 1022 HOH HOH . F 5 HOH A 24 1023 1023 HOH HOH . F 5 HOH A 25 1024 1024 HOH HOH . F 5 HOH A 26 1025 1025 HOH HOH . F 5 HOH A 27 1026 1026 HOH HOH . F 5 HOH A 28 1027 1027 HOH HOH . F 5 HOH A 29 1028 1028 HOH HOH . F 5 HOH A 30 1029 1029 HOH HOH . F 5 HOH A 31 1030 1030 HOH HOH . F 5 HOH A 32 1031 1031 HOH HOH . F 5 HOH A 33 1032 1032 HOH HOH . F 5 HOH A 34 1033 1033 HOH HOH . F 5 HOH A 35 1034 1034 HOH HOH . F 5 HOH A 36 1035 1035 HOH HOH . F 5 HOH A 37 1036 1036 HOH HOH . F 5 HOH A 38 1037 1037 HOH HOH . F 5 HOH A 39 1038 1038 HOH HOH . F 5 HOH A 40 1039 1039 HOH HOH . F 5 HOH A 41 1040 1040 HOH HOH . F 5 HOH A 42 1041 1041 HOH HOH . F 5 HOH A 43 1042 1042 HOH HOH . F 5 HOH A 44 1043 1043 HOH HOH . F 5 HOH A 45 1044 1044 HOH HOH . F 5 HOH A 46 1045 1045 HOH HOH . F 5 HOH A 47 1046 1046 HOH HOH . F 5 HOH A 48 1047 1047 HOH HOH . F 5 HOH A 49 1048 1048 HOH HOH . F 5 HOH A 50 1049 1049 HOH HOH . F 5 HOH A 51 1050 1050 HOH HOH . F 5 HOH A 52 1051 1051 HOH HOH . F 5 HOH A 53 1052 1052 HOH HOH . F 5 HOH A 54 1053 1053 HOH HOH . F 5 HOH A 55 1054 1054 HOH HOH . F 5 HOH A 56 1055 1055 HOH HOH . F 5 HOH A 57 1056 1056 HOH HOH . F 5 HOH A 58 1057 1057 HOH HOH . F 5 HOH A 59 1058 1058 HOH HOH . F 5 HOH A 60 1059 1059 HOH HOH . F 5 HOH A 61 1060 1060 HOH HOH . F 5 HOH A 62 1061 1061 HOH HOH . F 5 HOH A 63 1062 1062 HOH HOH . F 5 HOH A 64 1063 1063 HOH HOH . F 5 HOH A 65 1064 1064 HOH HOH . F 5 HOH A 66 1065 1065 HOH HOH . F 5 HOH A 67 1066 1066 HOH HOH . F 5 HOH A 68 1067 1067 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . E 4 87.214 10.471 -1.814 1 42.29 ? N SAM 500 A 1 HETATM 2 C CA SAM . . . E 4 86.12 9.465 -1.618 1 50.25 ? CA SAM 500 A 1 HETATM 3 C C SAM . . . E 4 85.238 9.452 -2.866 1 48.43 ? C SAM 500 A 1 HETATM 4 O O SAM . . . E 4 85.484 10.248 -3.783 1 48.54 ? O SAM 500 A 1 HETATM 5 O OXT SAM . . . E 4 84.285 8.602 -2.849 1 44.48 ? OXT SAM 500 A 1 HETATM 6 C CB SAM . . . E 4 85.202 9.91 -0.456 1 54.95 ? CB SAM 500 A 1 HETATM 7 C CG SAM . . . E 4 85.686 11.167 0.168 1 52.93 ? CG SAM 500 A 1 HETATM 8 S SD SAM . . . E 4 84.724 11.961 1.489 1 53.42 ? SD SAM 500 A 1 HETATM 9 C CE SAM . . . E 4 83.362 12.7 0.572 1 61.82 ? CE SAM 500 A 1 HETATM 10 C C5' SAM . . . E 4 85.752 13.308 1.904 1 52.28 ? C5' SAM 500 A 1 HETATM 11 C C4' SAM . . . E 4 86.947 12.903 2.753 1 44.17 ? C4' SAM 500 A 1 HETATM 12 O O4' SAM . . . E 4 87.75 14.083 2.958 1 50.1 ? O4' SAM 500 A 1 HETATM 13 C C3' SAM . . . E 4 86.522 12.548 4.191 1 49.88 ? C3' SAM 500 A 1 HETATM 14 O O3' SAM . . . E 4 86.679 11.114 4.293 1 41.14 ? O3' SAM 500 A 1 HETATM 15 C C2' SAM . . . E 4 87.527 13.225 5.105 1 43.08 ? C2' SAM 500 A 1 HETATM 16 O O2' SAM . . . E 4 88.08 12.569 6.209 1 50.52 ? O2' SAM 500 A 1 HETATM 17 C C1' SAM . . . E 4 88.524 13.822 4.085 1 44.67 ? C1' SAM 500 A 1 HETATM 18 N N9 SAM . . . E 4 89.168 15.032 4.546 1 46.04 ? N9 SAM 500 A 1 HETATM 19 C C8 SAM . . . E 4 88.613 16.229 4.94 1 48.88 ? C8 SAM 500 A 1 HETATM 20 N N7 SAM . . . E 4 89.494 17.125 5.297 1 56.22 ? N7 SAM 500 A 1 HETATM 21 C C5 SAM . . . E 4 90.716 16.479 5.128 1 51.55 ? C5 SAM 500 A 1 HETATM 22 C C6 SAM . . . E 4 92.064 16.889 5.333 1 47.05 ? C6 SAM 500 A 1 HETATM 23 N N6 SAM . . . E 4 92.378 18.118 5.779 1 47.26 ? N6 SAM 500 A 1 HETATM 24 N N1 SAM . . . E 4 93.083 16.002 5.069 1 47.46 ? N1 SAM 500 A 1 HETATM 25 C C2 SAM . . . E 4 92.754 14.766 4.619 1 48.36 ? C2 SAM 500 A 1 HETATM 26 N N3 SAM . . . E 4 91.515 14.27 4.389 1 47.64 ? N3 SAM 500 A 1 HETATM 27 C C4 SAM . . . E 4 90.53 15.185 4.664 1 47.75 ? C4 SAM 500 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #