data_1NW6 # _model_server_result.job_id kZwryqcuzl7fK08aFrEKaA _model_server_result.datetime_utc '2025-03-04 15:17:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nw6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 1NW6 # _exptl.entry_id 1NW6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.387 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SINEFUNGIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NW6 _cell.length_a 70.428 _cell.length_b 130.07 _cell.length_c 67.216 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NW6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 70.428 0 33.608 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H23 N7 O5' _chem_comp.formula_weight 381.387 _chem_comp.id SFG _chem_comp.mon_nstd_flag . _chem_comp.name SINEFUNGIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ADENOSYL-ORNITHINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SFG sing 290 n n N HN1 SFG sing 291 n n N HN2 SFG sing 292 n n CA C SFG sing 293 n n CA CB SFG sing 294 n n CA HA SFG sing 295 n n C O SFG doub 296 n n C OXT SFG sing 297 n n OXT HXT SFG sing 298 n n CB CG SFG sing 299 n n CB HB1 SFG sing 300 n n CB HB2 SFG sing 301 n n CG CD SFG sing 302 n n CG HG1 SFG sing 303 n n CG HG2 SFG sing 304 n n CD NE SFG sing 305 n n CD C5' SFG sing 306 n n CD HD SFG sing 307 n n NE HNE1 SFG sing 308 n n NE HNE2 SFG sing 309 n n C5' C4' SFG sing 310 n n C5' "H5'1" SFG sing 311 n n C5' "H5'2" SFG sing 312 n n C4' O4' SFG sing 313 n n C4' C3' SFG sing 314 n n C4' H4' SFG sing 315 n n O4' C1' SFG sing 316 n n C3' O3' SFG sing 317 n n C3' C2' SFG sing 318 n n C3' H3' SFG sing 319 n n O3' HO3' SFG sing 320 n n C2' O2' SFG sing 321 n n C2' C1' SFG sing 322 n n C2' H2' SFG sing 323 n n O2' HO2' SFG sing 324 n n C1' N9 SFG sing 325 n n C1' H1' SFG sing 326 n n N9 C8 SFG sing 327 n y N9 C4 SFG sing 328 n y C8 N7 SFG doub 329 n y C8 H8 SFG sing 330 n n N7 C5 SFG sing 331 n y C5 C6 SFG sing 332 n y C5 C4 SFG doub 333 n y C6 N6 SFG sing 334 n n C6 N1 SFG doub 335 n y N6 HN61 SFG sing 336 n n N6 HN62 SFG sing 337 n n N1 C2 SFG sing 338 n y C2 N3 SFG doub 339 n y C2 H2 SFG sing 340 n n N3 C4 SFG sing 341 n y # _atom_sites.entry_id 1NW6 _atom_sites.fract_transf_matrix[1][1] 0.014199 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007688 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 501 501 CL CL . C 2 CL A 1 502 502 CL CL . D 3 SFG A 1 401 401 SFG SFG . E 4 HOH A 1 503 503 HOH WAT . E 4 HOH A 2 504 504 HOH WAT . E 4 HOH A 3 505 505 HOH WAT . E 4 HOH A 4 506 506 HOH WAT . E 4 HOH A 5 507 507 HOH WAT . E 4 HOH A 6 508 508 HOH WAT . E 4 HOH A 7 509 509 HOH WAT . E 4 HOH A 8 510 510 HOH WAT . E 4 HOH A 9 511 511 HOH WAT . E 4 HOH A 10 512 512 HOH WAT . E 4 HOH A 11 513 513 HOH WAT . E 4 HOH A 12 514 514 HOH WAT . E 4 HOH A 13 515 515 HOH WAT . E 4 HOH A 14 516 516 HOH WAT . E 4 HOH A 15 517 517 HOH WAT . E 4 HOH A 16 518 518 HOH WAT . E 4 HOH A 17 519 519 HOH WAT . E 4 HOH A 18 520 520 HOH WAT . E 4 HOH A 19 521 521 HOH WAT . E 4 HOH A 20 522 522 HOH WAT . E 4 HOH A 21 523 523 HOH WAT . E 4 HOH A 22 524 524 HOH WAT . E 4 HOH A 23 525 525 HOH WAT . E 4 HOH A 24 526 526 HOH WAT . E 4 HOH A 25 527 527 HOH WAT . E 4 HOH A 26 528 528 HOH WAT . E 4 HOH A 27 529 529 HOH WAT . E 4 HOH A 28 530 530 HOH WAT . E 4 HOH A 29 531 531 HOH WAT . E 4 HOH A 30 532 532 HOH WAT . E 4 HOH A 31 533 533 HOH WAT . E 4 HOH A 32 534 534 HOH WAT . E 4 HOH A 33 535 535 HOH WAT . E 4 HOH A 34 536 536 HOH WAT . E 4 HOH A 35 537 537 HOH WAT . E 4 HOH A 36 538 538 HOH WAT . E 4 HOH A 37 539 539 HOH WAT . E 4 HOH A 38 540 540 HOH WAT . E 4 HOH A 39 541 541 HOH WAT . E 4 HOH A 40 542 542 HOH WAT . E 4 HOH A 41 543 543 HOH WAT . E 4 HOH A 42 544 544 HOH WAT . E 4 HOH A 43 545 545 HOH WAT . E 4 HOH A 44 546 546 HOH WAT . E 4 HOH A 45 547 547 HOH WAT . E 4 HOH A 46 548 548 HOH WAT . E 4 HOH A 47 549 549 HOH WAT . E 4 HOH A 48 550 550 HOH WAT . E 4 HOH A 49 551 551 HOH WAT . E 4 HOH A 50 552 552 HOH WAT . E 4 HOH A 51 553 553 HOH WAT . E 4 HOH A 52 554 554 HOH WAT . E 4 HOH A 53 555 555 HOH WAT . E 4 HOH A 54 556 556 HOH WAT . E 4 HOH A 55 557 557 HOH WAT . E 4 HOH A 56 558 558 HOH WAT . E 4 HOH A 57 559 559 HOH WAT . E 4 HOH A 58 560 560 HOH WAT . E 4 HOH A 59 561 561 HOH WAT . E 4 HOH A 60 562 562 HOH WAT . E 4 HOH A 61 563 563 HOH WAT . E 4 HOH A 62 564 564 HOH WAT . E 4 HOH A 63 565 565 HOH WAT . E 4 HOH A 64 566 566 HOH WAT . E 4 HOH A 65 567 567 HOH WAT . E 4 HOH A 66 568 568 HOH WAT . E 4 HOH A 67 569 569 HOH WAT . E 4 HOH A 68 570 570 HOH WAT . E 4 HOH A 69 571 571 HOH WAT . E 4 HOH A 70 572 572 HOH WAT . E 4 HOH A 71 573 573 HOH WAT . E 4 HOH A 72 574 574 HOH WAT . E 4 HOH A 73 575 575 HOH WAT . E 4 HOH A 74 576 576 HOH WAT . E 4 HOH A 75 577 577 HOH WAT . E 4 HOH A 76 578 578 HOH WAT . E 4 HOH A 77 579 579 HOH WAT . E 4 HOH A 78 580 580 HOH WAT . E 4 HOH A 79 581 581 HOH WAT . E 4 HOH A 80 582 582 HOH WAT . E 4 HOH A 81 583 583 HOH WAT . E 4 HOH A 82 584 584 HOH WAT . E 4 HOH A 83 585 585 HOH WAT . E 4 HOH A 84 586 586 HOH WAT . E 4 HOH A 85 587 587 HOH WAT . E 4 HOH A 86 588 588 HOH WAT . E 4 HOH A 87 589 589 HOH WAT . E 4 HOH A 88 590 590 HOH WAT . E 4 HOH A 89 591 591 HOH WAT . E 4 HOH A 90 592 592 HOH WAT . E 4 HOH A 91 593 593 HOH WAT . E 4 HOH A 92 594 594 HOH WAT . E 4 HOH A 93 595 595 HOH WAT . E 4 HOH A 94 596 596 HOH WAT . E 4 HOH A 95 597 597 HOH WAT . E 4 HOH A 96 598 598 HOH WAT . E 4 HOH A 97 599 599 HOH WAT . E 4 HOH A 98 600 600 HOH WAT . E 4 HOH A 99 601 601 HOH WAT . E 4 HOH A 100 602 602 HOH WAT . E 4 HOH A 101 603 603 HOH WAT . E 4 HOH A 102 604 604 HOH WAT . E 4 HOH A 103 605 605 HOH WAT . E 4 HOH A 104 606 606 HOH WAT . E 4 HOH A 105 607 607 HOH WAT . E 4 HOH A 106 608 608 HOH WAT . E 4 HOH A 107 609 609 HOH WAT . E 4 HOH A 108 610 610 HOH WAT . E 4 HOH A 109 611 611 HOH WAT . E 4 HOH A 110 612 612 HOH WAT . E 4 HOH A 111 613 613 HOH WAT . E 4 HOH A 112 614 614 HOH WAT . E 4 HOH A 113 615 615 HOH WAT . E 4 HOH A 114 616 616 HOH WAT . E 4 HOH A 115 617 617 HOH WAT . E 4 HOH A 116 618 618 HOH WAT . E 4 HOH A 117 619 619 HOH WAT . E 4 HOH A 118 620 620 HOH WAT . E 4 HOH A 119 621 621 HOH WAT . E 4 HOH A 120 622 622 HOH WAT . E 4 HOH A 121 623 623 HOH WAT . E 4 HOH A 122 624 624 HOH WAT . E 4 HOH A 123 625 625 HOH WAT . E 4 HOH A 124 626 626 HOH WAT . E 4 HOH A 125 627 627 HOH WAT . E 4 HOH A 126 628 628 HOH WAT . E 4 HOH A 127 629 629 HOH WAT . E 4 HOH A 128 630 630 HOH WAT . E 4 HOH A 129 631 631 HOH WAT . E 4 HOH A 130 632 632 HOH WAT . E 4 HOH A 131 633 633 HOH WAT . E 4 HOH A 132 634 634 HOH WAT . E 4 HOH A 133 635 635 HOH WAT . E 4 HOH A 134 636 636 HOH WAT . E 4 HOH A 135 637 637 HOH WAT . E 4 HOH A 136 638 638 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SFG . . . D 3 31.686 21.032 2.257 1 45.93 ? N SFG 401 A 1 HETATM 2 C CA SFG . . . D 3 32.307 20.171 1.243 1 47.11 ? CA SFG 401 A 1 HETATM 3 C C SFG . . . D 3 33.679 20.671 0.765 1 48.2 ? C SFG 401 A 1 HETATM 4 O O SFG . . . D 3 33.797 21.89 0.494 1 48.36 ? O SFG 401 A 1 HETATM 5 O OXT SFG . . . D 3 34.603 19.822 0.682 1 49.38 ? OXT SFG 401 A 1 HETATM 6 C CB SFG . . . D 3 31.441 19.966 -0.031 1 45.34 ? CB SFG 401 A 1 HETATM 7 C CG SFG . . . D 3 30.786 21.243 -0.639 1 42.81 ? CG SFG 401 A 1 HETATM 8 C CD SFG . . . D 3 30.494 21.125 -2.148 1 40.05 ? CD SFG 401 A 1 HETATM 9 N NE SFG . . . D 3 31.694 20.79 -2.981 1 40.5 ? NE SFG 401 A 1 HETATM 10 C C5' SFG . . . D 3 29.842 22.484 -2.471 1 36.13 ? C5' SFG 401 A 1 HETATM 11 C C4' SFG . . . D 3 28.62 22.441 -3.427 1 28.04 ? C4' SFG 401 A 1 HETATM 12 O O4' SFG . . . D 3 27.895 23.669 -3.405 1 26.17 ? O4' SFG 401 A 1 HETATM 13 C C3' SFG . . . D 3 28.901 22.146 -4.914 1 27.47 ? C3' SFG 401 A 1 HETATM 14 O O3' SFG . . . D 3 28.047 21.156 -5.459 1 24.36 ? O3' SFG 401 A 1 HETATM 15 C C2' SFG . . . D 3 28.869 23.537 -5.545 1 25.45 ? C2' SFG 401 A 1 HETATM 16 O O2' SFG . . . D 3 28.397 23.514 -6.901 1 24.33 ? O2' SFG 401 A 1 HETATM 17 C C1' SFG . . . D 3 27.77 24.227 -4.719 1 23.77 ? C1' SFG 401 A 1 HETATM 18 N N9 SFG . . . D 3 27.911 25.692 -4.564 1 22.24 ? N9 SFG 401 A 1 HETATM 19 C C8 SFG . . . D 3 28.993 26.497 -4.417 1 23.33 ? C8 SFG 401 A 1 HETATM 20 N N7 SFG . . . D 3 28.682 27.8 -4.293 1 23.95 ? N7 SFG 401 A 1 HETATM 21 C C5 SFG . . . D 3 27.289 27.864 -4.36 1 22.23 ? C5 SFG 401 A 1 HETATM 22 C C6 SFG . . . D 3 26.29 28.841 -4.305 1 23.91 ? C6 SFG 401 A 1 HETATM 23 N N6 SFG . . . D 3 26.586 30.156 -4.144 1 22.91 ? N6 SFG 401 A 1 HETATM 24 N N1 SFG . . . D 3 24.961 28.506 -4.413 1 20.3 ? N1 SFG 401 A 1 HETATM 25 C C2 SFG . . . D 3 24.608 27.207 -4.578 1 21.76 ? C2 SFG 401 A 1 HETATM 26 N N3 SFG . . . D 3 25.508 26.197 -4.643 1 23.74 ? N3 SFG 401 A 1 HETATM 27 C C4 SFG . . . D 3 26.823 26.54 -4.534 1 22.23 ? C4 SFG 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #