data_1NX0 # _model_server_result.job_id FlJMDuJh-piTSHF47b2gvw _model_server_result.datetime_utc '2025-03-06 19:58:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nx0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":903}' # _entry.id 1NX0 # _exptl.entry_id 1NX0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NX0 _cell.length_a 53.78 _cell.length_b 83.3 _cell.length_c 92.15 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NX0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 14 A ALA 107 1_555 F CA CA . A CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc2 A OD1 ASP 17 A ASP 110 1_555 F CA CA . A CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc3 A OD2 ASP 17 A ASP 110 1_555 F CA CA . A CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.245 ? metalc ? metalc4 A O GLU 19 A GLU 112 1_555 F CA CA . A CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc5 A OE2 GLU 24 A GLU 117 1_555 F CA CA . A CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc6 A OE1 GLU 24 A GLU 117 1_555 F CA CA . A CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc7 A OD1 ASP 57 A ASP 150 1_555 G CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc8 A OD1 ASP 59 A ASP 152 1_555 G CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc9 A OG1 THR 61 A THR 154 1_555 G CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc10 A O LYS 63 A LYS 156 1_555 G CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc11 A OE1 GLU 68 A GLU 161 1_555 G CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc12 A OD1 ASP 87 A ASP 180 1_555 H CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc13 A OD1 ASP 89 A ASP 182 1_555 H CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc14 A OG SER 91 A SER 184 1_555 H CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc15 A O THR 93 A THR 186 1_555 H CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc16 A OE1 GLU 98 A GLU 191 1_555 H CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.349 ? metalc ? metalc17 G CA CA . A CA 901 1_555 L O HOH . A HOH 1069 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc18 H CA CA . A CA 902 1_555 L O HOH . A HOH 1168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc19 B O ALA 14 B ALA 407 1_555 I CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc20 B OD2 ASP 17 B ASP 410 1_555 I CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc21 B O GLU 19 B GLU 412 1_555 I CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc22 B OE1 GLU 24 B GLU 417 1_555 I CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc23 B OE2 GLU 24 B GLU 417 1_555 I CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc24 B OD1 ASP 57 B ASP 450 1_555 J CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc25 B OD1 ASP 59 B ASP 452 1_555 J CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc26 B OG1 THR 61 B THR 454 1_555 J CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc27 B O LYS 63 B LYS 456 1_555 J CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc28 B OE1 GLU 68 B GLU 461 1_555 J CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc29 B OE2 GLU 68 B GLU 461 1_555 J CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.14 ? metalc ? metalc30 B OD1 ASP 87 B ASP 480 1_555 K CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc31 B OD1 ASP 89 B ASP 482 1_555 K CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc32 B OG SER 91 B SER 484 1_555 K CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc33 B O THR 93 B THR 486 1_555 K CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc34 B OE1 GLU 98 B GLU 491 1_555 K CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.118 ? metalc ? metalc35 J CA CA . B CA 904 1_555 M O HOH . B HOH 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1NX0 _atom_sites.fract_transf_matrix[1][1] 0.018594 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012005 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 CA A 1 900 900 CA CA2 . G 4 CA A 1 901 901 CA CA2 . H 4 CA A 1 902 902 CA CA2 . I 4 CA B 1 903 903 CA CA2 . J 4 CA B 1 904 904 CA CA2 . K 4 CA B 1 905 905 CA CA2 . L 5 HOH A 1 1002 1002 HOH TIP . L 5 HOH A 2 1003 1003 HOH TIP . L 5 HOH A 3 1004 1004 HOH TIP . L 5 HOH A 4 1005 1005 HOH TIP . L 5 HOH A 5 1009 1009 HOH TIP . L 5 HOH A 6 1011 1011 HOH TIP . L 5 HOH A 7 1012 1012 HOH TIP . L 5 HOH A 8 1013 1013 HOH TIP . L 5 HOH A 9 1015 1015 HOH TIP . L 5 HOH A 10 1016 1016 HOH TIP . L 5 HOH A 11 1018 1018 HOH TIP . L 5 HOH A 12 1019 1019 HOH TIP . L 5 HOH A 13 1021 1021 HOH TIP . L 5 HOH A 14 1022 1022 HOH TIP . L 5 HOH A 15 1024 1024 HOH TIP . L 5 HOH A 16 1025 1025 HOH TIP . L 5 HOH A 17 1026 1026 HOH TIP . L 5 HOH A 18 1032 1032 HOH TIP . L 5 HOH A 19 1033 1033 HOH TIP . L 5 HOH A 20 1036 1036 HOH TIP . L 5 HOH A 21 1037 1037 HOH TIP . L 5 HOH A 22 1039 1039 HOH TIP . L 5 HOH A 23 1040 1040 HOH TIP . L 5 HOH A 24 1041 1041 HOH TIP . L 5 HOH A 25 1043 1043 HOH TIP . L 5 HOH A 26 1044 1044 HOH TIP . L 5 HOH A 27 1045 1045 HOH TIP . L 5 HOH A 28 1046 1046 HOH TIP . L 5 HOH A 29 1047 1047 HOH TIP . L 5 HOH A 30 1050 1050 HOH TIP . L 5 HOH A 31 1053 1053 HOH TIP . L 5 HOH A 32 1054 1054 HOH TIP . L 5 HOH A 33 1055 1055 HOH TIP . L 5 HOH A 34 1056 1056 HOH TIP . L 5 HOH A 35 1057 1057 HOH TIP . L 5 HOH A 36 1058 1058 HOH TIP . L 5 HOH A 37 1059 1059 HOH TIP . L 5 HOH A 38 1060 1060 HOH TIP . L 5 HOH A 39 1061 1061 HOH TIP . L 5 HOH A 40 1063 1063 HOH TIP . L 5 HOH A 41 1065 1065 HOH TIP . L 5 HOH A 42 1068 1068 HOH TIP . L 5 HOH A 43 1069 1069 HOH TIP . L 5 HOH A 44 1072 1072 HOH TIP . L 5 HOH A 45 1073 1073 HOH TIP . L 5 HOH A 46 1074 1074 HOH TIP . L 5 HOH A 47 1075 1075 HOH TIP . L 5 HOH A 48 1082 1082 HOH TIP . L 5 HOH A 49 1087 1087 HOH TIP . L 5 HOH A 50 1089 1089 HOH TIP . L 5 HOH A 51 1090 1090 HOH TIP . L 5 HOH A 52 1091 1091 HOH TIP . L 5 HOH A 53 1092 1092 HOH TIP . L 5 HOH A 54 1093 1093 HOH TIP . L 5 HOH A 55 1095 1095 HOH TIP . L 5 HOH A 56 1098 1098 HOH TIP . L 5 HOH A 57 1099 1099 HOH TIP . L 5 HOH A 58 1101 1101 HOH TIP . L 5 HOH A 59 1102 1102 HOH TIP . L 5 HOH A 60 1104 1104 HOH TIP . L 5 HOH A 61 1108 1108 HOH TIP . L 5 HOH A 62 1111 1111 HOH TIP . L 5 HOH A 63 1112 1112 HOH TIP . L 5 HOH A 64 1113 1113 HOH TIP . L 5 HOH A 65 1114 1114 HOH TIP . L 5 HOH A 66 1116 1116 HOH TIP . L 5 HOH A 67 1117 1117 HOH TIP . L 5 HOH A 68 1119 1119 HOH TIP . L 5 HOH A 69 1120 1120 HOH TIP . L 5 HOH A 70 1122 1122 HOH TIP . L 5 HOH A 71 1125 1125 HOH TIP . L 5 HOH A 72 1129 1129 HOH TIP . L 5 HOH A 73 1139 1139 HOH TIP . L 5 HOH A 74 1140 1140 HOH TIP . L 5 HOH A 75 1141 1141 HOH TIP . L 5 HOH A 76 1150 1150 HOH TIP . L 5 HOH A 77 1167 1167 HOH TIP . L 5 HOH A 78 1168 1168 HOH TIP . L 5 HOH A 79 1169 1169 HOH TIP . L 5 HOH A 80 1174 1174 HOH TIP . L 5 HOH A 81 1177 1177 HOH TIP . L 5 HOH A 82 1178 1178 HOH TIP . L 5 HOH A 83 1185 1185 HOH TIP . L 5 HOH A 84 1187 1187 HOH TIP . L 5 HOH A 85 1188 1188 HOH TIP . L 5 HOH A 86 1190 1190 HOH TIP . L 5 HOH A 87 1192 1192 HOH TIP . L 5 HOH A 88 1195 1195 HOH TIP . M 5 HOH B 1 1001 1001 HOH TIP . M 5 HOH B 2 1007 1007 HOH TIP . M 5 HOH B 3 1008 1008 HOH TIP . M 5 HOH B 4 1010 1010 HOH TIP . M 5 HOH B 5 1014 1014 HOH TIP . M 5 HOH B 6 1027 1027 HOH TIP . M 5 HOH B 7 1028 1028 HOH TIP . M 5 HOH B 8 1029 1029 HOH TIP . M 5 HOH B 9 1030 1030 HOH TIP . M 5 HOH B 10 1034 1034 HOH TIP . M 5 HOH B 11 1035 1035 HOH TIP . M 5 HOH B 12 1038 1038 HOH TIP . M 5 HOH B 13 1051 1051 HOH TIP . M 5 HOH B 14 1052 1052 HOH TIP . M 5 HOH B 15 1062 1062 HOH TIP . M 5 HOH B 16 1064 1064 HOH TIP . M 5 HOH B 17 1077 1077 HOH TIP . M 5 HOH B 18 1081 1081 HOH TIP . M 5 HOH B 19 1083 1083 HOH TIP . M 5 HOH B 20 1084 1084 HOH TIP . M 5 HOH B 21 1086 1086 HOH TIP . M 5 HOH B 22 1088 1088 HOH TIP . M 5 HOH B 23 1094 1094 HOH TIP . M 5 HOH B 24 1097 1097 HOH TIP . M 5 HOH B 25 1100 1100 HOH TIP . M 5 HOH B 26 1105 1105 HOH TIP . M 5 HOH B 27 1106 1106 HOH TIP . M 5 HOH B 28 1107 1107 HOH TIP . M 5 HOH B 29 1110 1110 HOH TIP . M 5 HOH B 30 1115 1115 HOH TIP . M 5 HOH B 31 1118 1118 HOH TIP . M 5 HOH B 32 1121 1121 HOH TIP . M 5 HOH B 33 1130 1130 HOH TIP . M 5 HOH B 34 1134 1134 HOH TIP . M 5 HOH B 35 1137 1137 HOH TIP . M 5 HOH B 36 1142 1142 HOH TIP . M 5 HOH B 37 1143 1143 HOH TIP . M 5 HOH B 38 1146 1146 HOH TIP . M 5 HOH B 39 1147 1147 HOH TIP . M 5 HOH B 40 1151 1151 HOH TIP . M 5 HOH B 41 1154 1154 HOH TIP . M 5 HOH B 42 1157 1157 HOH TIP . M 5 HOH B 43 1159 1159 HOH TIP . M 5 HOH B 44 1165 1165 HOH TIP . M 5 HOH B 45 1183 1183 HOH TIP . M 5 HOH B 46 1184 1184 HOH TIP . M 5 HOH B 47 1197 1197 HOH TIP . N 5 HOH C 1 1006 1006 HOH TIP . N 5 HOH C 2 1017 1017 HOH TIP . N 5 HOH C 3 1020 1020 HOH TIP . N 5 HOH C 4 1049 1049 HOH TIP . N 5 HOH C 5 1071 1071 HOH TIP . N 5 HOH C 6 1080 1080 HOH TIP . N 5 HOH C 7 1103 1103 HOH TIP . N 5 HOH C 8 1109 1109 HOH TIP . N 5 HOH C 9 1131 1131 HOH TIP . N 5 HOH C 10 1164 1164 HOH TIP . O 5 HOH D 1 1023 1023 HOH TIP . P 5 HOH E 1 1070 1070 HOH TIP . P 5 HOH E 2 1076 1076 HOH TIP . P 5 HOH E 3 1079 1079 HOH TIP . P 5 HOH E 4 1138 1138 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 4 _atom_site.Cartn_x 11.712 _atom_site.Cartn_y 0.867 _atom_site.Cartn_z 22.258 _atom_site.occupancy 0.97 _atom_site.B_iso_or_equiv 58.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 903 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 1198 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #