data_1NX3 # _model_server_result.job_id NHlV-gh1J9OV4vbQfB1WNg _model_server_result.datetime_utc '2025-03-06 20:02:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nx3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3}' # _entry.id 1NX3 # _exptl.entry_id 1NX3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1NX3 _cell.length_a 78.578 _cell.length_b 78.578 _cell.length_c 77.891 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NX3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 25.963667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B CA CA . A CA 1 1_555 A OD1 ASP 57 A ASP 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc2 B CA CA . A CA 1 1_555 A OD1 ASP 59 A ASP 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc3 B CA CA . A CA 1 1_555 A OG1 THR 61 A THR 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc4 B CA CA . A CA 1 1_555 A O LYS 63 A LYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc5 B CA CA . A CA 1 1_555 A OE2 GLU 68 A GLU 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc6 B CA CA . A CA 1 1_555 A OE1 GLU 68 A GLU 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc7 B CA CA . A CA 1 1_555 G O HOH . A HOH 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc8 C CA CA . A CA 2 1_555 A O ALA 14 A ALA 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc9 C CA CA . A CA 2 1_555 A OD1 ASP 17 A ASP 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc10 C CA CA . A CA 2 1_555 A O GLU 19 A GLU 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc11 C CA CA . A CA 2 1_555 A OE1 GLU 24 A GLU 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc12 C CA CA . A CA 2 1_555 A OE2 GLU 24 A GLU 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc13 C CA CA . A CA 2 1_555 G O HOH . A HOH 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc14 D CA CA . A CA 3 1_555 A OD1 ASP 87 A ASP 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc15 D CA CA . A CA 3 1_555 A OD1 ASP 89 A ASP 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc16 D CA CA . A CA 3 1_555 A OG SER 91 A SER 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc17 D CA CA . A CA 3 1_555 A O THR 93 A THR 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc18 D CA CA . A CA 3 1_555 A OE1 GLU 98 A GLU 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc19 D CA CA . A CA 3 1_555 A OE2 GLU 98 A GLU 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc20 D CA CA . A CA 3 1_555 G O HOH . A HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc21 E CA CA . A CA 4 1_555 A OD1 ASP 42 A ASP 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc22 E CA CA . A CA 4 1_555 A OD1 ASP 130 A ASP 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc23 E CA CA . A CA 4 1_555 A OD2 ASP 130 A ASP 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc24 E CA CA . A CA 4 1_555 A OD1 ASP 132 A ASP 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc25 E CA CA . A CA 4 1_555 A OD2 ASP 132 A ASP 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc26 E CA CA . A CA 4 1_555 A ND2 ASN 133 A ASN 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc27 E CA CA . A CA 4 1_555 G O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1NX3 _atom_sites.fract_transf_matrix[1][1] 0.012726 _atom_sites.fract_transf_matrix[1][2] 0.007347 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014695 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012838 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1 1 CA CA2 . C 2 CA A 1 2 2 CA CA2 . D 2 CA A 1 3 3 CA CA2 . E 2 CA A 1 4 4 CA CA2 . F 3 ISA A 1 267 12 ISA ISA . G 4 HOH A 1 268 1 HOH TIP . G 4 HOH A 2 269 2 HOH TIP . G 4 HOH A 3 270 3 HOH TIP . G 4 HOH A 4 271 4 HOH TIP . G 4 HOH A 5 272 5 HOH TIP . G 4 HOH A 6 273 6 HOH TIP . G 4 HOH A 7 274 7 HOH TIP . G 4 HOH A 8 275 8 HOH TIP . G 4 HOH A 9 276 9 HOH TIP . G 4 HOH A 10 277 10 HOH TIP . G 4 HOH A 11 278 11 HOH TIP . G 4 HOH A 12 279 12 HOH TIP . G 4 HOH A 13 280 13 HOH TIP . G 4 HOH A 14 281 14 HOH TIP . G 4 HOH A 15 282 15 HOH TIP . G 4 HOH A 16 283 16 HOH TIP . G 4 HOH A 17 284 17 HOH TIP . G 4 HOH A 18 285 18 HOH TIP . G 4 HOH A 19 286 19 HOH TIP . G 4 HOH A 20 287 20 HOH TIP . G 4 HOH A 21 288 21 HOH TIP . G 4 HOH A 22 289 22 HOH TIP . G 4 HOH A 23 290 23 HOH TIP . G 4 HOH A 24 291 24 HOH TIP . G 4 HOH A 25 292 25 HOH TIP . G 4 HOH A 26 293 26 HOH TIP . G 4 HOH A 27 294 27 HOH TIP . G 4 HOH A 28 295 28 HOH TIP . G 4 HOH A 29 296 29 HOH TIP . G 4 HOH A 30 297 30 HOH TIP . G 4 HOH A 31 298 31 HOH TIP . G 4 HOH A 32 299 32 HOH TIP . G 4 HOH A 33 300 33 HOH TIP . G 4 HOH A 34 301 34 HOH TIP . G 4 HOH A 35 302 35 HOH TIP . G 4 HOH A 36 303 36 HOH TIP . G 4 HOH A 37 304 37 HOH TIP . G 4 HOH A 38 305 38 HOH TIP . G 4 HOH A 39 306 39 HOH TIP . G 4 HOH A 40 307 40 HOH TIP . G 4 HOH A 41 308 41 HOH TIP . G 4 HOH A 42 309 42 HOH TIP . G 4 HOH A 43 310 43 HOH TIP . G 4 HOH A 44 311 44 HOH TIP . G 4 HOH A 45 312 45 HOH TIP . G 4 HOH A 46 313 46 HOH TIP . G 4 HOH A 47 314 47 HOH TIP . G 4 HOH A 48 315 48 HOH TIP . G 4 HOH A 49 316 49 HOH TIP . G 4 HOH A 50 317 50 HOH TIP . G 4 HOH A 51 318 51 HOH TIP . G 4 HOH A 52 319 52 HOH TIP . G 4 HOH A 53 320 53 HOH TIP . G 4 HOH A 54 321 54 HOH TIP . G 4 HOH A 55 322 55 HOH TIP . G 4 HOH A 56 323 56 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.302 _atom_site.Cartn_y 29.889 _atom_site.Cartn_z 0.114 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.45 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 3 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 1 #