data_1NYQ # _model_server_result.job_id AX7Wl2HJBEP3_r5dLt1HOA _model_server_result.datetime_utc '2025-04-27 07:52:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nyq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2001}' # _entry.id 1NYQ # _exptl.entry_id 1NYQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NYQ _cell.length_a 104.278 _cell.length_b 122.73 _cell.length_c 149.941 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NYQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 336 A CYS 336 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc2 A NE2 HIS 387 A HIS 387 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc3 A ND1 HIS 517 A HIS 517 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc4 C ZN ZN . A ZN 1001 1_555 D N TSB . A TSB 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc5 C ZN ZN . A ZN 1001 1_555 D OG1 TSB . A TSB 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc6 B SG CYS 336 B CYS 336 1_555 E ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc7 B NE2 HIS 387 B HIS 387 1_555 E ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc8 B ND1 HIS 517 B HIS 517 1_555 E ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc9 E ZN ZN . B ZN 2001 1_555 F N TSB . B TSB 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc10 E ZN ZN . B ZN 2001 1_555 F OG1 TSB . B TSB 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.738 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1NYQ _atom_sites.fract_transf_matrix[1][1] 0.00959 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1001 1001 ZN ZN . D 3 TSB A 1 1002 2001 TSB TSB . E 2 ZN B 1 2001 1001 ZN ZN . F 3 TSB B 1 2002 2001 TSB TSB . G 4 HOH A 1 1003 1 HOH WAT . G 4 HOH A 2 1004 4 HOH WAT . G 4 HOH A 3 1005 6 HOH WAT . G 4 HOH A 4 1006 7 HOH WAT . G 4 HOH A 5 1007 11 HOH WAT . G 4 HOH A 6 1008 13 HOH WAT . G 4 HOH A 7 1009 16 HOH WAT . G 4 HOH A 8 1010 18 HOH WAT . G 4 HOH A 9 1011 19 HOH WAT . G 4 HOH A 10 1012 21 HOH WAT . G 4 HOH A 11 1013 29 HOH WAT . G 4 HOH A 12 1014 30 HOH WAT . G 4 HOH A 13 1015 36 HOH WAT . G 4 HOH A 14 1016 40 HOH WAT . G 4 HOH A 15 1017 41 HOH WAT . G 4 HOH A 16 1018 42 HOH WAT . G 4 HOH A 17 1019 49 HOH WAT . G 4 HOH A 18 1020 55 HOH WAT . G 4 HOH A 19 1021 57 HOH WAT . G 4 HOH A 20 1022 61 HOH WAT . G 4 HOH A 21 1023 65 HOH WAT . G 4 HOH A 22 1024 67 HOH WAT . G 4 HOH A 23 1025 68 HOH WAT . G 4 HOH A 24 1026 71 HOH WAT . G 4 HOH A 25 1027 72 HOH WAT . G 4 HOH A 26 1028 73 HOH WAT . G 4 HOH A 27 1029 75 HOH WAT . G 4 HOH A 28 1030 76 HOH WAT . G 4 HOH A 29 1031 77 HOH WAT . G 4 HOH A 30 1032 78 HOH WAT . G 4 HOH A 31 1033 79 HOH WAT . G 4 HOH A 32 1034 80 HOH WAT . G 4 HOH A 33 1035 81 HOH WAT . G 4 HOH A 34 1036 82 HOH WAT . G 4 HOH A 35 1037 83 HOH WAT . G 4 HOH A 36 1038 84 HOH WAT . G 4 HOH A 37 1039 85 HOH WAT . G 4 HOH A 38 1040 86 HOH WAT . G 4 HOH A 39 1041 87 HOH WAT . G 4 HOH A 40 1042 88 HOH WAT . G 4 HOH A 41 1043 89 HOH WAT . G 4 HOH A 42 1044 91 HOH WAT . G 4 HOH A 43 1045 96 HOH WAT . G 4 HOH A 44 1046 97 HOH WAT . G 4 HOH A 45 1047 99 HOH WAT . G 4 HOH A 46 1048 101 HOH WAT . G 4 HOH A 47 1049 102 HOH WAT . G 4 HOH A 48 1050 104 HOH WAT . G 4 HOH A 49 1051 108 HOH WAT . G 4 HOH A 50 1052 111 HOH WAT . G 4 HOH A 51 1053 112 HOH WAT . G 4 HOH A 52 1054 113 HOH WAT . G 4 HOH A 53 1055 114 HOH WAT . G 4 HOH A 54 1056 115 HOH WAT . G 4 HOH A 55 1057 116 HOH WAT . G 4 HOH A 56 1058 117 HOH WAT . G 4 HOH A 57 1059 118 HOH WAT . G 4 HOH A 58 1060 120 HOH WAT . G 4 HOH A 59 1061 121 HOH WAT . G 4 HOH A 60 1062 124 HOH WAT . G 4 HOH A 61 1063 126 HOH WAT . G 4 HOH A 62 1064 128 HOH WAT . G 4 HOH A 63 1065 129 HOH WAT . G 4 HOH A 64 1066 130 HOH WAT . G 4 HOH A 65 1067 131 HOH WAT . G 4 HOH A 66 1068 132 HOH WAT . G 4 HOH A 67 1069 133 HOH WAT . G 4 HOH A 68 1070 134 HOH WAT . G 4 HOH A 69 1071 135 HOH WAT . G 4 HOH A 70 1072 137 HOH WAT . G 4 HOH A 71 1073 138 HOH WAT . G 4 HOH A 72 1074 139 HOH WAT . G 4 HOH A 73 1075 140 HOH WAT . G 4 HOH A 74 1076 141 HOH WAT . G 4 HOH A 75 1077 143 HOH WAT . H 4 HOH B 1 2003 2 HOH WAT . H 4 HOH B 2 2004 3 HOH WAT . H 4 HOH B 3 2005 5 HOH WAT . H 4 HOH B 4 2006 8 HOH WAT . H 4 HOH B 5 2007 9 HOH WAT . H 4 HOH B 6 2008 10 HOH WAT . H 4 HOH B 7 2009 12 HOH WAT . H 4 HOH B 8 2010 14 HOH WAT . H 4 HOH B 9 2011 15 HOH WAT . H 4 HOH B 10 2012 17 HOH WAT . H 4 HOH B 11 2013 20 HOH WAT . H 4 HOH B 12 2014 22 HOH WAT . H 4 HOH B 13 2015 23 HOH WAT . H 4 HOH B 14 2016 24 HOH WAT . H 4 HOH B 15 2017 25 HOH WAT . H 4 HOH B 16 2018 26 HOH WAT . H 4 HOH B 17 2019 27 HOH WAT . H 4 HOH B 18 2020 28 HOH WAT . H 4 HOH B 19 2021 31 HOH WAT . H 4 HOH B 20 2022 32 HOH WAT . H 4 HOH B 21 2023 33 HOH WAT . H 4 HOH B 22 2024 34 HOH WAT . H 4 HOH B 23 2025 35 HOH WAT . H 4 HOH B 24 2026 37 HOH WAT . H 4 HOH B 25 2027 38 HOH WAT . H 4 HOH B 26 2028 39 HOH WAT . H 4 HOH B 27 2029 43 HOH WAT . H 4 HOH B 28 2030 44 HOH WAT . H 4 HOH B 29 2031 45 HOH WAT . H 4 HOH B 30 2032 46 HOH WAT . H 4 HOH B 31 2033 47 HOH WAT . H 4 HOH B 32 2034 48 HOH WAT . H 4 HOH B 33 2035 50 HOH WAT . H 4 HOH B 34 2036 51 HOH WAT . H 4 HOH B 35 2037 52 HOH WAT . H 4 HOH B 36 2038 53 HOH WAT . H 4 HOH B 37 2039 54 HOH WAT . H 4 HOH B 38 2040 56 HOH WAT . H 4 HOH B 39 2041 58 HOH WAT . H 4 HOH B 40 2042 59 HOH WAT . H 4 HOH B 41 2043 60 HOH WAT . H 4 HOH B 42 2044 62 HOH WAT . H 4 HOH B 43 2045 63 HOH WAT . H 4 HOH B 44 2046 64 HOH WAT . H 4 HOH B 45 2047 66 HOH WAT . H 4 HOH B 46 2048 69 HOH WAT . H 4 HOH B 47 2049 70 HOH WAT . H 4 HOH B 48 2050 74 HOH WAT . H 4 HOH B 49 2051 90 HOH WAT . H 4 HOH B 50 2052 92 HOH WAT . H 4 HOH B 51 2053 93 HOH WAT . H 4 HOH B 52 2054 94 HOH WAT . H 4 HOH B 53 2055 95 HOH WAT . H 4 HOH B 54 2056 98 HOH WAT . H 4 HOH B 55 2057 100 HOH WAT . H 4 HOH B 56 2058 103 HOH WAT . H 4 HOH B 57 2059 105 HOH WAT . H 4 HOH B 58 2060 106 HOH WAT . H 4 HOH B 59 2061 107 HOH WAT . H 4 HOH B 60 2062 109 HOH WAT . H 4 HOH B 61 2063 110 HOH WAT . H 4 HOH B 62 2064 119 HOH WAT . H 4 HOH B 63 2065 122 HOH WAT . H 4 HOH B 64 2066 123 HOH WAT . H 4 HOH B 65 2067 125 HOH WAT . H 4 HOH B 66 2068 127 HOH WAT . H 4 HOH B 67 2069 136 HOH WAT . H 4 HOH B 68 2070 142 HOH WAT . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 15.923 _atom_site.Cartn_y 39.917 _atom_site.Cartn_z 82.582 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 2001 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 1 #