data_1NYQ # _model_server_result.job_id 3IdAFEqaZXXvHLMQJvkLhQ _model_server_result.datetime_utc '2025-04-27 20:39:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nyq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2002}' # _entry.id 1NYQ # _exptl.entry_id 1NYQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 447.424 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NYQ _cell.length_a 104.278 _cell.length_b 122.73 _cell.length_c 149.941 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NYQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 336 A CYS 336 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc2 A NE2 HIS 387 A HIS 387 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc3 A ND1 HIS 517 A HIS 517 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc4 C ZN ZN . A ZN 1001 1_555 D N TSB . A TSB 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc5 C ZN ZN . A ZN 1001 1_555 D OG1 TSB . A TSB 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc6 B SG CYS 336 B CYS 336 1_555 E ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc7 B NE2 HIS 387 B HIS 387 1_555 E ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc8 B ND1 HIS 517 B HIS 517 1_555 E ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc9 E ZN ZN . B ZN 2001 1_555 F N TSB . B TSB 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc10 E ZN ZN . B ZN 2001 1_555 F OG1 TSB . B TSB 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.738 ? # _chem_comp.formula 'C14 H21 N7 O8 S' _chem_comp.formula_weight 447.424 _chem_comp.id TSB _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CG2 CB TSB sing 334 n n CG2 HG21 TSB sing 335 n n CG2 HG22 TSB sing 336 n n CG2 HG23 TSB sing 337 n n N CA TSB sing 338 n n N HN11 TSB sing 339 n n N HN12 TSB sing 340 n n CA CB TSB sing 341 n n CA C TSB sing 342 n n CA HA TSB sing 343 n n CB OG1 TSB sing 344 n n CB HB TSB sing 345 n n OG1 HG1 TSB sing 346 n n C O TSB doub 347 n n C N8 TSB sing 348 n n N8 S1 TSB sing 349 n n N8 HN8 TSB sing 350 n n S1 O1S TSB doub 351 n n S1 O2S TSB doub 352 n n S1 O5' TSB sing 353 n n O5' C5' TSB sing 354 n n C5' C4' TSB sing 355 n n C5' "H5'1" TSB sing 356 n n C5' "H5'2" TSB sing 357 n n C4' O4' TSB sing 358 n n C4' C3' TSB sing 359 n n C4' H4' TSB sing 360 n n O4' C1' TSB sing 361 n n C3' O3' TSB sing 362 n n C3' C2' TSB sing 363 n n C3' H3' TSB sing 364 n n O3' HO3' TSB sing 365 n n C2' O2' TSB sing 366 n n C2' C1' TSB sing 367 n n C2' H2' TSB sing 368 n n O2' HO2' TSB sing 369 n n C1' N9 TSB sing 370 n n C1' H1' TSB sing 371 n n N9 C8 TSB sing 372 n y N9 C4 TSB sing 373 n y C8 N7 TSB doub 374 n y C8 H8 TSB sing 375 n n N7 C5 TSB sing 376 n y C5 C6 TSB sing 377 n y C5 C4 TSB doub 378 n y C6 N6 TSB sing 379 n n C6 N1 TSB doub 380 n y N6 HN61 TSB sing 381 n n N6 HN62 TSB sing 382 n n N1 C2 TSB sing 383 n y C2 N3 TSB doub 384 n y C2 H2 TSB sing 385 n n N3 C4 TSB sing 386 n y # _atom_sites.entry_id 1NYQ _atom_sites.fract_transf_matrix[1][1] 0.00959 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1001 1001 ZN ZN . D 3 TSB A 1 1002 2001 TSB TSB . E 2 ZN B 1 2001 1001 ZN ZN . F 3 TSB B 1 2002 2001 TSB TSB . G 4 HOH A 1 1003 1 HOH WAT . G 4 HOH A 2 1004 4 HOH WAT . G 4 HOH A 3 1005 6 HOH WAT . G 4 HOH A 4 1006 7 HOH WAT . G 4 HOH A 5 1007 11 HOH WAT . G 4 HOH A 6 1008 13 HOH WAT . G 4 HOH A 7 1009 16 HOH WAT . G 4 HOH A 8 1010 18 HOH WAT . G 4 HOH A 9 1011 19 HOH WAT . G 4 HOH A 10 1012 21 HOH WAT . G 4 HOH A 11 1013 29 HOH WAT . G 4 HOH A 12 1014 30 HOH WAT . G 4 HOH A 13 1015 36 HOH WAT . G 4 HOH A 14 1016 40 HOH WAT . G 4 HOH A 15 1017 41 HOH WAT . G 4 HOH A 16 1018 42 HOH WAT . G 4 HOH A 17 1019 49 HOH WAT . G 4 HOH A 18 1020 55 HOH WAT . G 4 HOH A 19 1021 57 HOH WAT . G 4 HOH A 20 1022 61 HOH WAT . G 4 HOH A 21 1023 65 HOH WAT . G 4 HOH A 22 1024 67 HOH WAT . G 4 HOH A 23 1025 68 HOH WAT . G 4 HOH A 24 1026 71 HOH WAT . G 4 HOH A 25 1027 72 HOH WAT . G 4 HOH A 26 1028 73 HOH WAT . G 4 HOH A 27 1029 75 HOH WAT . G 4 HOH A 28 1030 76 HOH WAT . G 4 HOH A 29 1031 77 HOH WAT . G 4 HOH A 30 1032 78 HOH WAT . G 4 HOH A 31 1033 79 HOH WAT . G 4 HOH A 32 1034 80 HOH WAT . G 4 HOH A 33 1035 81 HOH WAT . G 4 HOH A 34 1036 82 HOH WAT . G 4 HOH A 35 1037 83 HOH WAT . G 4 HOH A 36 1038 84 HOH WAT . G 4 HOH A 37 1039 85 HOH WAT . G 4 HOH A 38 1040 86 HOH WAT . G 4 HOH A 39 1041 87 HOH WAT . G 4 HOH A 40 1042 88 HOH WAT . G 4 HOH A 41 1043 89 HOH WAT . G 4 HOH A 42 1044 91 HOH WAT . G 4 HOH A 43 1045 96 HOH WAT . G 4 HOH A 44 1046 97 HOH WAT . G 4 HOH A 45 1047 99 HOH WAT . G 4 HOH A 46 1048 101 HOH WAT . G 4 HOH A 47 1049 102 HOH WAT . G 4 HOH A 48 1050 104 HOH WAT . G 4 HOH A 49 1051 108 HOH WAT . G 4 HOH A 50 1052 111 HOH WAT . G 4 HOH A 51 1053 112 HOH WAT . G 4 HOH A 52 1054 113 HOH WAT . G 4 HOH A 53 1055 114 HOH WAT . G 4 HOH A 54 1056 115 HOH WAT . G 4 HOH A 55 1057 116 HOH WAT . G 4 HOH A 56 1058 117 HOH WAT . G 4 HOH A 57 1059 118 HOH WAT . G 4 HOH A 58 1060 120 HOH WAT . G 4 HOH A 59 1061 121 HOH WAT . G 4 HOH A 60 1062 124 HOH WAT . G 4 HOH A 61 1063 126 HOH WAT . G 4 HOH A 62 1064 128 HOH WAT . G 4 HOH A 63 1065 129 HOH WAT . G 4 HOH A 64 1066 130 HOH WAT . G 4 HOH A 65 1067 131 HOH WAT . G 4 HOH A 66 1068 132 HOH WAT . G 4 HOH A 67 1069 133 HOH WAT . G 4 HOH A 68 1070 134 HOH WAT . G 4 HOH A 69 1071 135 HOH WAT . G 4 HOH A 70 1072 137 HOH WAT . G 4 HOH A 71 1073 138 HOH WAT . G 4 HOH A 72 1074 139 HOH WAT . G 4 HOH A 73 1075 140 HOH WAT . G 4 HOH A 74 1076 141 HOH WAT . G 4 HOH A 75 1077 143 HOH WAT . H 4 HOH B 1 2003 2 HOH WAT . H 4 HOH B 2 2004 3 HOH WAT . H 4 HOH B 3 2005 5 HOH WAT . H 4 HOH B 4 2006 8 HOH WAT . H 4 HOH B 5 2007 9 HOH WAT . H 4 HOH B 6 2008 10 HOH WAT . H 4 HOH B 7 2009 12 HOH WAT . H 4 HOH B 8 2010 14 HOH WAT . H 4 HOH B 9 2011 15 HOH WAT . H 4 HOH B 10 2012 17 HOH WAT . H 4 HOH B 11 2013 20 HOH WAT . H 4 HOH B 12 2014 22 HOH WAT . H 4 HOH B 13 2015 23 HOH WAT . H 4 HOH B 14 2016 24 HOH WAT . H 4 HOH B 15 2017 25 HOH WAT . H 4 HOH B 16 2018 26 HOH WAT . H 4 HOH B 17 2019 27 HOH WAT . H 4 HOH B 18 2020 28 HOH WAT . H 4 HOH B 19 2021 31 HOH WAT . H 4 HOH B 20 2022 32 HOH WAT . H 4 HOH B 21 2023 33 HOH WAT . H 4 HOH B 22 2024 34 HOH WAT . H 4 HOH B 23 2025 35 HOH WAT . H 4 HOH B 24 2026 37 HOH WAT . H 4 HOH B 25 2027 38 HOH WAT . H 4 HOH B 26 2028 39 HOH WAT . H 4 HOH B 27 2029 43 HOH WAT . H 4 HOH B 28 2030 44 HOH WAT . H 4 HOH B 29 2031 45 HOH WAT . H 4 HOH B 30 2032 46 HOH WAT . H 4 HOH B 31 2033 47 HOH WAT . H 4 HOH B 32 2034 48 HOH WAT . H 4 HOH B 33 2035 50 HOH WAT . H 4 HOH B 34 2036 51 HOH WAT . H 4 HOH B 35 2037 52 HOH WAT . H 4 HOH B 36 2038 53 HOH WAT . H 4 HOH B 37 2039 54 HOH WAT . H 4 HOH B 38 2040 56 HOH WAT . H 4 HOH B 39 2041 58 HOH WAT . H 4 HOH B 40 2042 59 HOH WAT . H 4 HOH B 41 2043 60 HOH WAT . H 4 HOH B 42 2044 62 HOH WAT . H 4 HOH B 43 2045 63 HOH WAT . H 4 HOH B 44 2046 64 HOH WAT . H 4 HOH B 45 2047 66 HOH WAT . H 4 HOH B 46 2048 69 HOH WAT . H 4 HOH B 47 2049 70 HOH WAT . H 4 HOH B 48 2050 74 HOH WAT . H 4 HOH B 49 2051 90 HOH WAT . H 4 HOH B 50 2052 92 HOH WAT . H 4 HOH B 51 2053 93 HOH WAT . H 4 HOH B 52 2054 94 HOH WAT . H 4 HOH B 53 2055 95 HOH WAT . H 4 HOH B 54 2056 98 HOH WAT . H 4 HOH B 55 2057 100 HOH WAT . H 4 HOH B 56 2058 103 HOH WAT . H 4 HOH B 57 2059 105 HOH WAT . H 4 HOH B 58 2060 106 HOH WAT . H 4 HOH B 59 2061 107 HOH WAT . H 4 HOH B 60 2062 109 HOH WAT . H 4 HOH B 61 2063 110 HOH WAT . H 4 HOH B 62 2064 119 HOH WAT . H 4 HOH B 63 2065 122 HOH WAT . H 4 HOH B 64 2066 123 HOH WAT . H 4 HOH B 65 2067 125 HOH WAT . H 4 HOH B 66 2068 127 HOH WAT . H 4 HOH B 67 2069 136 HOH WAT . H 4 HOH B 68 2070 142 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CG2 TSB . . . F 3 16.108 43.397 84.716 1 41.13 ? CG2 TSB 2002 B 1 HETATM 2 N N TSB . . . F 3 13.71 40.677 83.581 1 41.58 ? N TSB 2002 B 1 HETATM 3 C CA TSB . . . F 3 14.292 41.668 84.479 1 43.29 ? CA TSB 2002 B 1 HETATM 4 C CB TSB . . . F 3 15.386 42.432 83.761 1 42.9 ? CB TSB 2002 B 1 HETATM 5 O OG1 TSB . . . F 3 16.312 41.482 83.229 1 45.69 ? OG1 TSB 2002 B 1 HETATM 6 C C TSB . . . F 3 13.305 42.676 85.087 1 44.52 ? C TSB 2002 B 1 HETATM 7 O O TSB . . . F 3 12.336 43.121 84.447 1 44.48 ? O TSB 2002 B 1 HETATM 8 N N8 TSB . . . F 3 13.559 43.041 86.328 1 46.42 ? N8 TSB 2002 B 1 HETATM 9 S S1 TSB . . . F 3 12.449 43.749 87.184 1 48.51 ? S1 TSB 2002 B 1 HETATM 10 O O1S TSB . . . F 3 11.237 42.927 87.007 1 47.44 ? O1S TSB 2002 B 1 HETATM 11 O O2S TSB . . . F 3 12.965 44.034 88.552 1 47.76 ? O2S TSB 2002 B 1 HETATM 12 O O5' TSB . . . F 3 12.191 45.118 86.422 1 48.7 ? O5' TSB 2002 B 1 HETATM 13 C C5' TSB . . . F 3 13.236 46.059 86.248 1 48.43 ? C5' TSB 2002 B 1 HETATM 14 C C4' TSB . . . F 3 12.866 47.342 86.925 1 48.85 ? C4' TSB 2002 B 1 HETATM 15 O O4' TSB . . . F 3 11.708 47.912 86.275 1 49.68 ? O4' TSB 2002 B 1 HETATM 16 C C3' TSB . . . F 3 12.401 47.162 88.352 1 48.48 ? C3' TSB 2002 B 1 HETATM 17 O O3' TSB . . . F 3 13.544 47.086 89.186 1 49.43 ? O3' TSB 2002 B 1 HETATM 18 C C2' TSB . . . F 3 11.58 48.428 88.594 1 47.81 ? C2' TSB 2002 B 1 HETATM 19 O O2' TSB . . . F 3 12.388 49.543 88.909 1 44.98 ? O2' TSB 2002 B 1 HETATM 20 C C1' TSB . . . F 3 10.961 48.659 87.216 1 48.68 ? C1' TSB 2002 B 1 HETATM 21 N N9 TSB . . . F 3 9.554 48.302 87.076 1 49.16 ? N9 TSB 2002 B 1 HETATM 22 C C8 TSB . . . F 3 8.973 47.058 87.077 1 49.37 ? C8 TSB 2002 B 1 HETATM 23 N N7 TSB . . . F 3 7.669 47.083 86.898 1 50.81 ? N7 TSB 2002 B 1 HETATM 24 C C5 TSB . . . F 3 7.372 48.439 86.777 1 51.08 ? C5 TSB 2002 B 1 HETATM 25 C C6 TSB . . . F 3 6.153 49.145 86.579 1 50.86 ? C6 TSB 2002 B 1 HETATM 26 N N6 TSB . . . F 3 4.96 48.551 86.467 1 50.68 ? N6 TSB 2002 B 1 HETATM 27 N N1 TSB . . . F 3 6.209 50.499 86.511 1 49.49 ? N1 TSB 2002 B 1 HETATM 28 C C2 TSB . . . F 3 7.403 51.094 86.636 1 50.01 ? C2 TSB 2002 B 1 HETATM 29 N N3 TSB . . . F 3 8.612 50.546 86.825 1 50.87 ? N3 TSB 2002 B 1 HETATM 30 C C4 TSB . . . F 3 8.525 49.201 86.888 1 50.84 ? C4 TSB 2002 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #