data_1NYX
#
_model_server_result.job_id            2RbSby81KN8cW55AeZRd_Q 
_model_server_result.datetime_utc      '2025-05-17 11:50:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1nyx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":101}' 
#
_entry.id    1NYX 
#
_exptl.entry_id    1NYX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              419.47 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2-ETHOXY-3-{4-[2-(10H-PHENOXAZIN-10-YL)ETHOXY]PHENYL}PROPANOIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.91 
_cell.angle_gamma         90 
_cell.entry_id            1NYX 
_cell.length_a            91.546 
_cell.length_b            62.09 
_cell.length_c            117.741 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NYX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C25 H25 N O5' 
_chem_comp.formula_weight    419.47 
_chem_comp.id                DRF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2-ETHOXY-3-{4-[2-(10H-PHENOXAZIN-10-YL)ETHOXY]PHENYL}PROPANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     RAGAGLITAZAR 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O45 C44 DRF sing 83 n n 
O45 H45 DRF sing 84 n n 
C44 O55 DRF doub 85 n n 
C44 C41 DRF sing 86 n n 
C41 O46 DRF sing 87 n n 
C41 C40 DRF sing 88 n n 
C41 H41 DRF sing 89 n n 
O46 C48 DRF sing 90 n n 
C48 C49 DRF sing 91 n n 
C48 H481 DRF sing 92 n n 
C48 H482 DRF sing 93 n n 
C49 H491 DRF sing 94 n n 
C49 H492 DRF sing 95 n n 
C49 H493 DRF sing 96 n n 
C40 C33 DRF sing 97 n n 
C40 H401 DRF sing 98 n n 
C40 H402 DRF sing 99 n n 
C33 C34 DRF doub 100 n y 
C33 C32 DRF sing 101 n y 
C34 C35 DRF sing 102 n y 
C34 H34 DRF sing 103 n n 
C35 C30 DRF doub 104 n y 
C35 H35 DRF sing 105 n n 
C30 O27 DRF sing 106 n n 
C30 C31 DRF sing 107 n y 
O27 C24 DRF sing 108 n n 
C24 C23 DRF sing 109 n n 
C24 H241 DRF sing 110 n n 
C24 H242 DRF sing 111 n n 
C23 N22 DRF sing 112 n n 
C23 H231 DRF sing 113 n n 
C23 H232 DRF sing 114 n n 
N22 C11 DRF sing 115 n n 
N22 C3 DRF sing 116 n n 
C11 C16 DRF doub 117 n y 
C11 C12 DRF sing 118 n y 
C16 O21 DRF sing 119 n n 
C16 C15 DRF sing 120 n y 
O21 C4 DRF sing 121 n n 
C4 C3 DRF doub 122 n y 
C4 C5 DRF sing 123 n y 
C3 C2 DRF sing 124 n y 
C2 C1 DRF doub 125 n y 
C2 H2 DRF sing 126 n n 
C1 C6 DRF sing 127 n y 
C1 H1 DRF sing 128 n n 
C6 C5 DRF doub 129 n y 
C6 H6 DRF sing 130 n n 
C5 H5 DRF sing 131 n n 
C15 C14 DRF doub 132 n y 
C15 H15 DRF sing 133 n n 
C14 C13 DRF sing 134 n y 
C14 H14 DRF sing 135 n n 
C13 C12 DRF doub 136 n y 
C13 H13 DRF sing 137 n n 
C12 H12 DRF sing 138 n n 
C31 C32 DRF doub 139 n y 
C31 H31 DRF sing 140 n n 
C32 H32 DRF sing 141 n n 
#
_atom_sites.entry_id                     1NYX 
_atom_sites.fract_transf_matrix[1][1]    0.010923 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002503 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016106 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008713 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DRF A 1 101 1 DRF DRF . 
D 3 HOH A 1 1 1 HOH HOH . 
D 3 HOH A 2 2 2 HOH HOH . 
D 3 HOH A 3 3 3 HOH HOH . 
D 3 HOH A 4 4 4 HOH HOH . 
D 3 HOH A 5 5 5 HOH HOH . 
D 3 HOH A 6 6 6 HOH HOH . 
D 3 HOH A 7 7 7 HOH HOH . 
D 3 HOH A 8 8 8 HOH HOH . 
D 3 HOH A 9 9 9 HOH HOH . 
D 3 HOH A 10 10 10 HOH HOH . 
D 3 HOH A 11 11 11 HOH HOH . 
D 3 HOH A 12 12 12 HOH HOH . 
D 3 HOH A 13 14 14 HOH HOH . 
D 3 HOH A 14 16 16 HOH HOH . 
D 3 HOH A 15 17 17 HOH HOH . 
D 3 HOH A 16 18 18 HOH HOH . 
D 3 HOH A 17 19 19 HOH HOH . 
D 3 HOH A 18 26 26 HOH HOH . 
D 3 HOH A 19 30 30 HOH HOH . 
D 3 HOH A 20 35 35 HOH HOH . 
D 3 HOH A 21 38 38 HOH HOH . 
D 3 HOH A 22 40 40 HOH HOH . 
D 3 HOH A 23 42 42 HOH HOH . 
D 3 HOH A 24 43 43 HOH HOH . 
D 3 HOH A 25 44 44 HOH HOH . 
D 3 HOH A 26 48 48 HOH HOH . 
D 3 HOH A 27 49 49 HOH HOH . 
D 3 HOH A 28 50 50 HOH HOH . 
D 3 HOH A 29 51 51 HOH HOH . 
D 3 HOH A 30 54 54 HOH HOH . 
D 3 HOH A 31 59 59 HOH HOH . 
D 3 HOH A 32 60 60 HOH HOH . 
D 3 HOH A 33 61 61 HOH HOH . 
D 3 HOH A 34 63 63 HOH HOH . 
D 3 HOH A 35 66 66 HOH HOH . 
D 3 HOH A 36 67 67 HOH HOH . 
D 3 HOH A 37 68 68 HOH HOH . 
D 3 HOH A 38 70 70 HOH HOH . 
D 3 HOH A 39 72 72 HOH HOH . 
D 3 HOH A 40 73 73 HOH HOH . 
D 3 HOH A 41 78 78 HOH HOH . 
D 3 HOH A 42 82 82 HOH HOH . 
D 3 HOH A 43 83 83 HOH HOH . 
D 3 HOH A 44 84 84 HOH HOH . 
D 3 HOH A 45 85 85 HOH HOH . 
D 3 HOH A 46 87 87 HOH HOH . 
E 3 HOH B 1 20 20 HOH HOH . 
E 3 HOH B 2 21 21 HOH HOH . 
E 3 HOH B 3 22 22 HOH HOH . 
E 3 HOH B 4 23 23 HOH HOH . 
E 3 HOH B 5 24 24 HOH HOH . 
E 3 HOH B 6 25 25 HOH HOH . 
E 3 HOH B 7 27 27 HOH HOH . 
E 3 HOH B 8 28 28 HOH HOH . 
E 3 HOH B 9 29 29 HOH HOH . 
E 3 HOH B 10 31 31 HOH HOH . 
E 3 HOH B 11 32 32 HOH HOH . 
E 3 HOH B 12 33 33 HOH HOH . 
E 3 HOH B 13 34 34 HOH HOH . 
E 3 HOH B 14 36 36 HOH HOH . 
E 3 HOH B 15 37 37 HOH HOH . 
E 3 HOH B 16 39 39 HOH HOH . 
E 3 HOH B 17 41 41 HOH HOH . 
E 3 HOH B 18 45 45 HOH HOH . 
E 3 HOH B 19 46 46 HOH HOH . 
E 3 HOH B 20 47 47 HOH HOH . 
E 3 HOH B 21 52 52 HOH HOH . 
E 3 HOH B 22 53 53 HOH HOH . 
E 3 HOH B 23 55 55 HOH HOH . 
E 3 HOH B 24 56 56 HOH HOH . 
E 3 HOH B 25 57 57 HOH HOH . 
E 3 HOH B 26 58 58 HOH HOH . 
E 3 HOH B 27 62 62 HOH HOH . 
E 3 HOH B 28 64 64 HOH HOH . 
E 3 HOH B 29 65 65 HOH HOH . 
E 3 HOH B 30 69 69 HOH HOH . 
E 3 HOH B 31 71 71 HOH HOH . 
E 3 HOH B 32 74 74 HOH HOH . 
E 3 HOH B 33 75 75 HOH HOH . 
E 3 HOH B 34 76 76 HOH HOH . 
E 3 HOH B 35 77 77 HOH HOH . 
E 3 HOH B 36 79 79 HOH HOH . 
E 3 HOH B 37 80 80 HOH HOH . 
E 3 HOH B 38 81 81 HOH HOH . 
E 3 HOH B 39 86 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O45 DRF . . . C 2 18.129 63.153 21.231 1 71.65 ? O45 DRF 101 A 1 
HETATM 2 C C44 DRF . . . C 2 18.901 63.053 20.251 1 70.46 ? C44 DRF 101 A 1 
HETATM 3 O O55 DRF . . . C 2 19.975 62.722 20.899 1 69.82 ? O55 DRF 101 A 1 
HETATM 4 C C41 DRF . . . C 2 18.73 63.237 18.967 1 70.88 ? C41 DRF 101 A 1 
HETATM 5 O O46 DRF . . . C 2 20.037 63.78 18.321 1 71.12 ? O46 DRF 101 A 1 
HETATM 6 C C48 DRF . . . C 2 19.848 65.035 17.723 1 71.32 ? C48 DRF 101 A 1 
HETATM 7 C C49 DRF . . . C 2 21.132 65.514 17.107 1 70.88 ? C49 DRF 101 A 1 
HETATM 8 C C40 DRF . . . C 2 18.296 62.151 18.162 1 71.73 ? C40 DRF 101 A 1 
HETATM 9 C C33 DRF . . . C 2 17.829 61.827 16.88 1 72.69 ? C33 DRF 101 A 1 
HETATM 10 C C34 DRF . . . C 2 18.824 61.567 15.908 1 74.14 ? C34 DRF 101 A 1 
HETATM 11 C C35 DRF . . . C 2 18.45 61.254 14.586 1 73.14 ? C35 DRF 101 A 1 
HETATM 12 C C30 DRF . . . C 2 17.082 61.2 14.237 1 72.5 ? C30 DRF 101 A 1 
HETATM 13 O O27 DRF . . . C 2 16.712 60.901 12.932 1 72.16 ? O27 DRF 101 A 1 
HETATM 14 C C24 DRF . . . C 2 16.243 62.096 12.324 1 68.42 ? C24 DRF 101 A 1 
HETATM 15 C C23 DRF . . . C 2 16.092 61.916 10.816 1 62.05 ? C23 DRF 101 A 1 
HETATM 16 N N22 DRF . . . C 2 15.865 63.226 10.184 1 57.73 ? N22 DRF 101 A 1 
HETATM 17 C C11 DRF . . . C 2 14.587 63.711 9.991 1 55.21 ? C11 DRF 101 A 1 
HETATM 18 C C16 DRF . . . C 2 14.406 65.138 9.851 1 54.27 ? C16 DRF 101 A 1 
HETATM 19 O O21 DRF . . . C 2 15.499 65.945 9.91 1 56.24 ? O21 DRF 101 A 1 
HETATM 20 C C4 DRF . . . C 2 16.729 65.417 9.644 1 58.83 ? C4 DRF 101 A 1 
HETATM 21 C C3 DRF . . . C 2 16.926 63.995 9.785 1 58.61 ? C3 DRF 101 A 1 
HETATM 22 C C2 DRF . . . C 2 18.212 63.448 9.51 1 59.58 ? C2 DRF 101 A 1 
HETATM 23 C C1 DRF . . . C 2 19.272 64.282 9.105 1 61.19 ? C1 DRF 101 A 1 
HETATM 24 C C6 DRF . . . C 2 19.068 65.674 8.97 1 61.43 ? C6 DRF 101 A 1 
HETATM 25 C C5 DRF . . . C 2 17.802 66.237 9.238 1 59.11 ? C5 DRF 101 A 1 
HETATM 26 C C15 DRF . . . C 2 13.114 65.676 9.66 1 52.51 ? C15 DRF 101 A 1 
HETATM 27 C C14 DRF . . . C 2 11.992 64.818 9.607 1 55.22 ? C14 DRF 101 A 1 
HETATM 28 C C13 DRF . . . C 2 12.155 63.417 9.741 1 55.35 ? C13 DRF 101 A 1 
HETATM 29 C C12 DRF . . . C 2 13.44 62.866 9.932 1 54.26 ? C12 DRF 101 A 1 
HETATM 30 C C31 DRF . . . C 2 16.09 61.457 15.221 1 71.72 ? C31 DRF 101 A 1 
HETATM 31 C C32 DRF . . . C 2 16.469 61.768 16.533 1 71.69 ? C32 DRF 101 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#