data_1NZ3 # _model_server_result.job_id cWR0HPdVi4U0YOpGuPAYdA _model_server_result.datetime_utc '2025-02-12 10:12:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nz3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":154}' # _entry.id 1NZ3 # _exptl.entry_id 1NZ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NZ3 _cell.length_a 29 _cell.length_b 35.8 _cell.length_c 125.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NZ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 B FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc2 B FE HEM . A HEM 154 1_555 C O HOH . A HOH 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 1NZ3 _atom_sites.fract_transf_matrix[1][1] 0.034483 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 154 154 HEM HEM . C 3 HOH A 1 155 155 HOH HOH . C 3 HOH A 2 156 156 HOH HOH . C 3 HOH A 3 157 157 HOH HOH . C 3 HOH A 4 158 158 HOH HOH . C 3 HOH A 5 159 159 HOH HOH . C 3 HOH A 6 160 160 HOH HOH . C 3 HOH A 7 161 161 HOH HOH . C 3 HOH A 8 162 162 HOH HOH . C 3 HOH A 9 163 163 HOH HOH . C 3 HOH A 10 164 164 HOH HOH . C 3 HOH A 11 165 165 HOH HOH . C 3 HOH A 12 166 166 HOH HOH . C 3 HOH A 13 167 167 HOH HOH . C 3 HOH A 14 168 168 HOH HOH . C 3 HOH A 15 169 169 HOH HOH . C 3 HOH A 16 170 170 HOH HOH . C 3 HOH A 17 171 171 HOH HOH . C 3 HOH A 18 172 172 HOH HOH . C 3 HOH A 19 173 173 HOH HOH . C 3 HOH A 20 174 174 HOH HOH . C 3 HOH A 21 175 175 HOH HOH . C 3 HOH A 22 176 176 HOH HOH . C 3 HOH A 23 177 177 HOH HOH . C 3 HOH A 24 178 178 HOH HOH . C 3 HOH A 25 179 179 HOH HOH . C 3 HOH A 26 180 180 HOH HOH . C 3 HOH A 27 181 181 HOH HOH . C 3 HOH A 28 182 182 HOH HOH . C 3 HOH A 29 183 183 HOH HOH . C 3 HOH A 30 184 184 HOH HOH . C 3 HOH A 31 185 185 HOH HOH . C 3 HOH A 32 186 186 HOH HOH . C 3 HOH A 33 187 187 HOH HOH . C 3 HOH A 34 188 188 HOH HOH . C 3 HOH A 35 189 189 HOH HOH . C 3 HOH A 36 190 190 HOH HOH . C 3 HOH A 37 191 191 HOH HOH . C 3 HOH A 38 192 192 HOH HOH . C 3 HOH A 39 193 193 HOH HOH . C 3 HOH A 40 194 194 HOH HOH . C 3 HOH A 41 195 195 HOH HOH . C 3 HOH A 42 196 196 HOH HOH . C 3 HOH A 43 197 197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 35.879 9.307 16.518 1 12.16 ? CHA HEM 154 A 1 HETATM 2 C CHB HEM . . . B 2 32.747 12.904 15.667 1 9.94 ? CHB HEM 154 A 1 HETATM 3 C CHC HEM . . . B 2 29.554 9.691 14.148 1 10.71 ? CHC HEM 154 A 1 HETATM 4 C CHD HEM . . . B 2 32.534 6.097 15.182 1 11.1 ? CHD HEM 154 A 1 HETATM 5 C C1A HEM . . . B 2 35.366 10.593 16.387 1 12.05 ? C1A HEM 154 A 1 HETATM 6 C C2A HEM . . . B 2 36.007 11.865 16.695 1 10.25 ? C2A HEM 154 A 1 HETATM 7 C C3A HEM . . . B 2 35.13 12.824 16.495 1 11.94 ? C3A HEM 154 A 1 HETATM 8 C C4A HEM . . . B 2 33.88 12.194 16.06 1 10.43 ? C4A HEM 154 A 1 HETATM 9 C CMA HEM . . . B 2 35.325 14.348 16.631 1 11.7 ? CMA HEM 154 A 1 HETATM 10 C CAA HEM . . . B 2 37.48 12.034 17.116 1 13.85 ? CAA HEM 154 A 1 HETATM 11 C CBA HEM . . . B 2 38.404 12.403 15.918 1 14.62 ? CBA HEM 154 A 1 HETATM 12 C CGA HEM . . . B 2 38.327 11.477 14.688 1 14.64 ? CGA HEM 154 A 1 HETATM 13 O O1A HEM . . . B 2 38.782 10.332 14.813 1 15.24 ? O1A HEM 154 A 1 HETATM 14 O O2A HEM . . . B 2 37.777 12.068 13.685 1 15.94 ? O2A HEM 154 A 1 HETATM 15 C C1B HEM . . . B 2 31.588 12.352 15.139 1 11.55 ? C1B HEM 154 A 1 HETATM 16 C C2B HEM . . . B 2 30.422 13.126 14.76 1 11 ? C2B HEM 154 A 1 HETATM 17 C C3B HEM . . . B 2 29.483 12.213 14.375 1 11.25 ? C3B HEM 154 A 1 HETATM 18 C C4B HEM . . . B 2 30.093 10.903 14.472 1 10.62 ? C4B HEM 154 A 1 HETATM 19 C CMB HEM . . . B 2 30.271 14.664 14.858 1 11.29 ? CMB HEM 154 A 1 HETATM 20 C CAB HEM . . . B 2 28.053 12.44 13.822 1 12.26 ? CAB HEM 154 A 1 HETATM 21 C CBB HEM . . . B 2 27.213 13.395 14.389 1 13.77 ? CBB HEM 154 A 1 HETATM 22 C C1C HEM . . . B 2 30.003 8.391 14.337 1 11.83 ? C1C HEM 154 A 1 HETATM 23 C C2C HEM . . . B 2 29.258 7.128 14.222 1 11.48 ? C2C HEM 154 A 1 HETATM 24 C C3C HEM . . . B 2 30.082 6.139 14.452 1 11.68 ? C3C HEM 154 A 1 HETATM 25 C C4C HEM . . . B 2 31.403 6.765 14.794 1 11.58 ? C4C HEM 154 A 1 HETATM 26 C CMC HEM . . . B 2 27.786 7.11 13.75 1 13.93 ? CMC HEM 154 A 1 HETATM 27 C CAC HEM . . . B 2 29.924 4.612 14.481 1 13.48 ? CAC HEM 154 A 1 HETATM 28 C CBC HEM . . . B 2 28.84 3.884 14.512 1 15.4 ? CBC HEM 154 A 1 HETATM 29 C C1D HEM . . . B 2 33.707 6.653 15.68 1 12.41 ? C1D HEM 154 A 1 HETATM 30 C C2D HEM . . . B 2 34.866 5.9 16.17 1 12.71 ? C2D HEM 154 A 1 HETATM 31 C C3D HEM . . . B 2 35.761 6.798 16.538 1 12.63 ? C3D HEM 154 A 1 HETATM 32 C C4D HEM . . . B 2 35.228 8.119 16.292 1 11.76 ? C4D HEM 154 A 1 HETATM 33 C CMD HEM . . . B 2 34.915 4.374 16.271 1 14.32 ? CMD HEM 154 A 1 HETATM 34 C CAD HEM . . . B 2 37.19 6.624 17.195 1 17 ? CAD HEM 154 A 1 HETATM 35 C CBD HEM . . . B 2 36.97 6.255 18.66 1 21.13 ? CBD HEM 154 A 1 HETATM 36 C CGD HEM . . . B 2 37.887 6.375 19.781 1 26.62 ? CGD HEM 154 A 1 HETATM 37 O O1D HEM . . . B 2 37.733 5.574 20.776 1 30.45 ? O1D HEM 154 A 1 HETATM 38 O O2D HEM . . . B 2 38.701 7.35 19.789 1 30.69 ? O2D HEM 154 A 1 HETATM 39 N NA HEM . . . B 2 34.049 10.836 15.964 1 11.78 ? NA HEM 154 A 1 HETATM 40 N NB HEM . . . B 2 31.428 10.983 14.917 1 10.93 ? NB HEM 154 A 1 HETATM 41 N NC HEM . . . B 2 31.309 8.13 14.701 1 13.77 ? NC HEM 154 A 1 HETATM 42 N ND HEM . . . B 2 33.938 7.985 15.759 1 11.11 ? ND HEM 154 A 1 HETATM 43 FE FE HEM . . . B 2 32.687 9.492 15.316 1 13.4 ? FE HEM 154 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #