data_1NZ5
#
_model_server_result.job_id            N1kxtW4WdRQarZL43RAUXw 
_model_server_result.datetime_utc      '2024-12-26 11:09:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1nz5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":154}' 
#
_entry.id    1NZ5 
#
_exptl.entry_id    1NZ5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1NZ5 
_cell.length_a            28.9 
_cell.length_b            35.6 
_cell.length_c            125.1 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NZ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 45 A GLU 45 1_555 B MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? 
metalc ? metalc2 A NE2 HIS 93 A HIS 93 1_555 C FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc3 A NE2 HIS 113 A HIS 113 1_655 B MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc4 C FE HEM . A HEM 154 1_555 D O HOH . A HOH 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc5 C O2D HEM . A HEM 154 1_555 B MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc6 D O HOH . A HOH 298 1_555 B MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 116 n n 
CHA C4D HEM doub 117 n n 
CHA HHA HEM sing 118 n n 
CHB C4A HEM sing 119 n n 
CHB C1B HEM doub 120 n n 
CHB HHB HEM sing 121 n n 
CHC C4B HEM sing 122 n n 
CHC C1C HEM doub 123 n n 
CHC HHC HEM sing 124 n n 
CHD C4C HEM doub 125 n n 
CHD C1D HEM sing 126 n n 
CHD HHD HEM sing 127 n n 
C1A C2A HEM doub 128 n y 
C1A NA HEM sing 129 n y 
C2A C3A HEM sing 130 n y 
C2A CAA HEM sing 131 n n 
C3A C4A HEM doub 132 n y 
C3A CMA HEM sing 133 n n 
C4A NA HEM sing 134 n y 
CMA HMA HEM sing 135 n n 
CMA HMAA HEM sing 136 n n 
CMA HMAB HEM sing 137 n n 
CAA CBA HEM sing 138 n n 
CAA HAA HEM sing 139 n n 
CAA HAAA HEM sing 140 n n 
CBA CGA HEM sing 141 n n 
CBA HBA HEM sing 142 n n 
CBA HBAA HEM sing 143 n n 
CGA O1A HEM doub 144 n n 
CGA O2A HEM sing 145 n n 
C1B C2B HEM sing 146 n n 
C1B NB HEM sing 147 n n 
C2B C3B HEM doub 148 n n 
C2B CMB HEM sing 149 n n 
C3B C4B HEM sing 150 n n 
C3B CAB HEM sing 151 n n 
C4B NB HEM doub 152 n n 
CMB HMB HEM sing 153 n n 
CMB HMBA HEM sing 154 n n 
CMB HMBB HEM sing 155 n n 
CAB CBB HEM doub 156 n n 
CAB HAB HEM sing 157 n n 
CBB HBB HEM sing 158 n n 
CBB HBBA HEM sing 159 n n 
C1C C2C HEM sing 160 n y 
C1C NC HEM sing 161 n y 
C2C C3C HEM doub 162 n y 
C2C CMC HEM sing 163 n n 
C3C C4C HEM sing 164 n y 
C3C CAC HEM sing 165 n n 
C4C NC HEM sing 166 n y 
CMC HMC HEM sing 167 n n 
CMC HMCA HEM sing 168 n n 
CMC HMCB HEM sing 169 n n 
CAC CBC HEM doub 170 n n 
CAC HAC HEM sing 171 n n 
CBC HBC HEM sing 172 n n 
CBC HBCA HEM sing 173 n n 
C1D C2D HEM sing 174 n n 
C1D ND HEM doub 175 n n 
C2D C3D HEM doub 176 n n 
C2D CMD HEM sing 177 n n 
C3D C4D HEM sing 178 n n 
C3D CAD HEM sing 179 n n 
C4D ND HEM sing 180 n n 
CMD HMD HEM sing 181 n n 
CMD HMDA HEM sing 182 n n 
CMD HMDB HEM sing 183 n n 
CAD CBD HEM sing 184 n n 
CAD HAD HEM sing 185 n n 
CAD HADA HEM sing 186 n n 
CBD CGD HEM sing 187 n n 
CBD HBD HEM sing 188 n n 
CBD HBDA HEM sing 189 n n 
CGD O1D HEM doub 190 n n 
CGD O2D HEM sing 191 n n 
O2A H2A HEM sing 192 n n 
O2D H2D HEM sing 193 n n 
FE NA HEM sing 194 n n 
FE NB HEM sing 195 n n 
FE NC HEM sing 196 n n 
FE ND HEM sing 197 n n 
#
_atom_sites.entry_id                     1NZ5 
_atom_sites.fract_transf_matrix[1][1]    0.034602 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02809 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007994 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 300 300 MN CHL . 
C 3 HEM A 1 154 154 HEM HEM . 
D 4 HOH A 1 155 155 HOH HOH . 
D 4 HOH A 2 156 156 HOH HOH . 
D 4 HOH A 3 159 159 HOH HOH . 
D 4 HOH A 4 160 160 HOH HOH . 
D 4 HOH A 5 161 161 HOH HOH . 
D 4 HOH A 6 162 162 HOH HOH . 
D 4 HOH A 7 163 163 HOH HOH . 
D 4 HOH A 8 165 165 HOH HOH . 
D 4 HOH A 9 166 166 HOH HOH . 
D 4 HOH A 10 167 167 HOH HOH . 
D 4 HOH A 11 168 168 HOH HOH . 
D 4 HOH A 12 169 169 HOH HOH . 
D 4 HOH A 13 170 170 HOH HOH . 
D 4 HOH A 14 171 171 HOH HOH . 
D 4 HOH A 15 173 173 HOH HOH . 
D 4 HOH A 16 174 174 HOH HOH . 
D 4 HOH A 17 175 175 HOH HOH . 
D 4 HOH A 18 176 176 HOH HOH . 
D 4 HOH A 19 177 177 HOH HOH . 
D 4 HOH A 20 178 178 HOH HOH . 
D 4 HOH A 21 179 179 HOH HOH . 
D 4 HOH A 22 180 180 HOH HOH . 
D 4 HOH A 23 181 181 HOH HOH . 
D 4 HOH A 24 182 182 HOH HOH . 
D 4 HOH A 25 184 184 HOH HOH . 
D 4 HOH A 26 185 185 HOH HOH . 
D 4 HOH A 27 186 186 HOH HOH . 
D 4 HOH A 28 187 187 HOH HOH . 
D 4 HOH A 29 188 188 HOH HOH . 
D 4 HOH A 30 189 189 HOH HOH . 
D 4 HOH A 31 192 192 HOH HOH . 
D 4 HOH A 32 194 194 HOH HOH . 
D 4 HOH A 33 195 195 HOH HOH . 
D 4 HOH A 34 196 196 HOH HOH . 
D 4 HOH A 35 197 197 HOH HOH . 
D 4 HOH A 36 198 198 HOH HOH . 
D 4 HOH A 37 199 199 HOH HOH . 
D 4 HOH A 38 203 203 HOH HOH . 
D 4 HOH A 39 204 204 HOH HOH . 
D 4 HOH A 40 207 207 HOH HOH . 
D 4 HOH A 41 208 208 HOH HOH . 
D 4 HOH A 42 209 209 HOH HOH . 
D 4 HOH A 43 210 210 HOH HOH . 
D 4 HOH A 44 211 211 HOH HOH . 
D 4 HOH A 45 213 213 HOH HOH . 
D 4 HOH A 46 214 214 HOH HOH . 
D 4 HOH A 47 298 298 HOH HOH . 
D 4 HOH A 48 299 299 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 36.101 9.361 16.396 1 11.07 ? CHA HEM 154 A 1 
HETATM 2 C CHB HEM . . . C 3 33.029 12.982 15.547 1 10.55 ? CHB HEM 154 A 1 
HETATM 3 C CHC HEM . . . C 3 29.784 9.723 14.031 1 11.59 ? CHC HEM 154 A 1 
HETATM 4 C CHD HEM . . . C 3 32.78 6.077 15.075 1 11.13 ? CHD HEM 154 A 1 
HETATM 5 C C1A HEM . . . C 3 35.601 10.639 16.277 1 11.3 ? C1A HEM 154 A 1 
HETATM 6 C C2A HEM . . . C 3 36.247 11.865 16.611 1 9.22 ? C2A HEM 154 A 1 
HETATM 7 C C3A HEM . . . C 3 35.382 12.858 16.374 1 9.45 ? C3A HEM 154 A 1 
HETATM 8 C C4A HEM . . . C 3 34.144 12.267 15.918 1 9.4 ? C4A HEM 154 A 1 
HETATM 9 C CMA HEM . . . C 3 35.594 14.373 16.546 1 8.22 ? CMA HEM 154 A 1 
HETATM 10 C CAA HEM . . . C 3 37.694 12.02 17.038 1 10.92 ? CAA HEM 154 A 1 
HETATM 11 C CBA HEM . . . C 3 38.745 12.376 15.915 1 13.63 ? CBA HEM 154 A 1 
HETATM 12 C CGA HEM . . . C 3 38.696 11.442 14.701 1 16.24 ? CGA HEM 154 A 1 
HETATM 13 O O1A HEM . . . C 3 39.076 10.255 14.796 1 15.12 ? O1A HEM 154 A 1 
HETATM 14 O O2A HEM . . . C 3 38.172 11.962 13.649 1 17.79 ? O2A HEM 154 A 1 
HETATM 15 C C1B HEM . . . C 3 31.863 12.371 15.063 1 11.29 ? C1B HEM 154 A 1 
HETATM 16 C C2B HEM . . . C 3 30.672 13.101 14.743 1 10.97 ? C2B HEM 154 A 1 
HETATM 17 C C3B HEM . . . C 3 29.794 12.222 14.302 1 12.79 ? C3B HEM 154 A 1 
HETATM 18 C C4B HEM . . . C 3 30.389 10.926 14.36 1 12.06 ? C4B HEM 154 A 1 
HETATM 19 C CMB HEM . . . C 3 30.583 14.653 14.871 1 10.57 ? CMB HEM 154 A 1 
HETATM 20 C CAB HEM . . . C 3 28.334 12.421 13.789 1 12.68 ? CAB HEM 154 A 1 
HETATM 21 C CBB HEM . . . C 3 27.429 13.449 14.395 1 14.3 ? CBB HEM 154 A 1 
HETATM 22 C C1C HEM . . . C 3 30.255 8.446 14.244 1 11.73 ? C1C HEM 154 A 1 
HETATM 23 C C2C HEM . . . C 3 29.518 7.21 14.11 1 11.97 ? C2C HEM 154 A 1 
HETATM 24 C C3C HEM . . . C 3 30.331 6.201 14.401 1 11.11 ? C3C HEM 154 A 1 
HETATM 25 C C4C HEM . . . C 3 31.633 6.792 14.711 1 11.37 ? C4C HEM 154 A 1 
HETATM 26 C CMC HEM . . . C 3 28.016 7.163 13.684 1 12.56 ? CMC HEM 154 A 1 
HETATM 27 C CAC HEM . . . C 3 30.088 4.688 14.452 1 10.35 ? CAC HEM 154 A 1 
HETATM 28 C CBC HEM . . . C 3 28.827 3.966 14.43 1 12.08 ? CBC HEM 154 A 1 
HETATM 29 C C1D HEM . . . C 3 33.931 6.695 15.54 1 11.09 ? C1D HEM 154 A 1 
HETATM 30 C C2D HEM . . . C 3 35.102 5.984 16.034 1 14.2 ? C2D HEM 154 A 1 
HETATM 31 C C3D HEM . . . C 3 35.992 6.892 16.393 1 12.98 ? C3D HEM 154 A 1 
HETATM 32 C C4D HEM . . . C 3 35.457 8.166 16.141 1 12.25 ? C4D HEM 154 A 1 
HETATM 33 C CMD HEM . . . C 3 35.212 4.446 16.109 1 13.67 ? CMD HEM 154 A 1 
HETATM 34 C CAD HEM . . . C 3 37.411 6.662 17.009 1 17.31 ? CAD HEM 154 A 1 
HETATM 35 C CBD HEM . . . C 3 37.268 6.598 18.571 1 21.71 ? CBD HEM 154 A 1 
HETATM 36 C CGD HEM . . . C 3 38.487 6.063 19.276 1 24.99 ? CGD HEM 154 A 1 
HETATM 37 O O1D HEM . . . C 3 38.602 4.809 19.358 1 28.23 ? O1D HEM 154 A 1 
HETATM 38 O O2D HEM . . . C 3 39.303 6.87 19.745 1 26.34 ? O2D HEM 154 A 1 
HETATM 39 N NA HEM . . . C 3 34.269 10.894 15.812 1 12.06 ? NA HEM 154 A 1 
HETATM 40 N NB HEM . . . C 3 31.694 11.025 14.833 1 11.65 ? NB HEM 154 A 1 
HETATM 41 N NC HEM . . . C 3 31.574 8.178 14.624 1 12.83 ? NC HEM 154 A 1 
HETATM 42 N ND HEM . . . C 3 34.154 8.053 15.609 1 11.31 ? ND HEM 154 A 1 
HETATM 43 FE FE HEM . . . C 3 32.907 9.545 15.235 1 13.54 ? FE HEM 154 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#