data_1NZ5 # _model_server_result.job_id QIxipLz6x9CbJWwkt5GLTQ _model_server_result.datetime_utc '2024-12-26 10:55:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nz5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1NZ5 # _exptl.entry_id 1NZ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NZ5 _cell.length_a 28.9 _cell.length_b 35.6 _cell.length_c 125.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NZ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 45 A GLU 45 1_555 B MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc2 A NE2 HIS 93 A HIS 93 1_555 C FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc3 A NE2 HIS 113 A HIS 113 1_655 B MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc4 C FE HEM . A HEM 154 1_555 D O HOH . A HOH 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc5 C O2D HEM . A HEM 154 1_555 B MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc6 D O HOH . A HOH 298 1_555 B MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1NZ5 _atom_sites.fract_transf_matrix[1][1] 0.034602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02809 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007994 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 300 300 MN CHL . C 3 HEM A 1 154 154 HEM HEM . D 4 HOH A 1 155 155 HOH HOH . D 4 HOH A 2 156 156 HOH HOH . D 4 HOH A 3 159 159 HOH HOH . D 4 HOH A 4 160 160 HOH HOH . D 4 HOH A 5 161 161 HOH HOH . D 4 HOH A 6 162 162 HOH HOH . D 4 HOH A 7 163 163 HOH HOH . D 4 HOH A 8 165 165 HOH HOH . D 4 HOH A 9 166 166 HOH HOH . D 4 HOH A 10 167 167 HOH HOH . D 4 HOH A 11 168 168 HOH HOH . D 4 HOH A 12 169 169 HOH HOH . D 4 HOH A 13 170 170 HOH HOH . D 4 HOH A 14 171 171 HOH HOH . D 4 HOH A 15 173 173 HOH HOH . D 4 HOH A 16 174 174 HOH HOH . D 4 HOH A 17 175 175 HOH HOH . D 4 HOH A 18 176 176 HOH HOH . D 4 HOH A 19 177 177 HOH HOH . D 4 HOH A 20 178 178 HOH HOH . D 4 HOH A 21 179 179 HOH HOH . D 4 HOH A 22 180 180 HOH HOH . D 4 HOH A 23 181 181 HOH HOH . D 4 HOH A 24 182 182 HOH HOH . D 4 HOH A 25 184 184 HOH HOH . D 4 HOH A 26 185 185 HOH HOH . D 4 HOH A 27 186 186 HOH HOH . D 4 HOH A 28 187 187 HOH HOH . D 4 HOH A 29 188 188 HOH HOH . D 4 HOH A 30 189 189 HOH HOH . D 4 HOH A 31 192 192 HOH HOH . D 4 HOH A 32 194 194 HOH HOH . D 4 HOH A 33 195 195 HOH HOH . D 4 HOH A 34 196 196 HOH HOH . D 4 HOH A 35 197 197 HOH HOH . D 4 HOH A 36 198 198 HOH HOH . D 4 HOH A 37 199 199 HOH HOH . D 4 HOH A 38 203 203 HOH HOH . D 4 HOH A 39 204 204 HOH HOH . D 4 HOH A 40 207 207 HOH HOH . D 4 HOH A 41 208 208 HOH HOH . D 4 HOH A 42 209 209 HOH HOH . D 4 HOH A 43 210 210 HOH HOH . D 4 HOH A 44 211 211 HOH HOH . D 4 HOH A 45 213 213 HOH HOH . D 4 HOH A 46 214 214 HOH HOH . D 4 HOH A 47 298 298 HOH HOH . D 4 HOH A 48 299 299 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 40.222 _atom_site.Cartn_y 5.842 _atom_site.Cartn_z 21.61 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.8 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 300 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #