data_1NZA # _model_server_result.job_id YwJhBjXqMa4uU_rUqJNn0Q _model_server_result.datetime_utc '2024-12-03 05:06:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nza # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":105}' # _entry.id 1NZA # _exptl.entry_id 1NZA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NZA _cell.length_a 83.003 _cell.length_b 83.003 _cell.length_c 83.003 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NZA _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PQS dodecameric 12 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1,2,3 A,B,C,D,E,F,G,H,I,J 2 1,4,5,6,7,8,9,2,10,11,3,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_656 -z+1,x,-y+1 0 0 -1 1 0 0 0 -1 0 83.003 0 83.003 3 'crystal symmetry operation' 11_566 y,-z+1,-x+1 0 1 0 0 0 -1 -1 0 0 0 83.003 83.003 4 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 83.003 83.003 0 5 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 83.003 0 83.003 6 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 83.003 83.003 7 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 6_566 z,-x+1,-y+1 0 0 1 -1 0 0 0 -1 0 0 83.003 83.003 9 'crystal symmetry operation' 7_665 -z+1,-x+1,y 0 0 -1 -1 0 0 0 1 0 83.003 83.003 0 10 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 11 'crystal symmetry operation' 10_656 -y+1,z,-x+1 0 -1 0 0 0 1 -1 0 0 83.003 0 83.003 12 'crystal symmetry operation' 12_665 -y+1,-z+1,x 0 -1 0 0 0 -1 1 0 0 83.003 83.003 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 8 A THR 8 1_555 B NA NA . A NA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc2 A OD1 ASP 50 A ASP 50 1_555 C NA NA . A NA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc3 A OD1 ASP 50 A ASP 50 3_656 C NA NA . A NA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc4 A OE1 GLU 52 A GLU 52 1_555 B NA NA . A NA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc5 A OE2 GLU 52 A GLU 52 1_555 B NA NA . A NA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc6 B NA NA . A NA 104 1_555 J O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc7 B NA NA . A NA 104 1_555 J O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc8 C NA NA . A NA 105 1_555 J O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc9 C NA NA . A NA 105 1_555 J O HOH . A HOH 501 3_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc10 C NA NA . A NA 105 1_555 J O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc11 C NA NA . A NA 105 1_555 J O HOH . A HOH 502 3_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1NZA _atom_sites.fract_transf_matrix[1][1] 0.012048 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012048 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 104 104 NA NA . C 2 NA A 1 105 105 NA NA . D 3 CL A 1 108 108 CL CL . E 3 CL A 1 109 109 CL CL . F 3 CL A 1 110 110 CL CL . G 3 CL A 1 111 111 CL CL . H 4 SO4 A 1 200 200 SO4 SO4 . I 5 GOL A 1 500 500 GOL GOL . J 6 HOH A 1 501 1 HOH HOH . J 6 HOH A 2 502 2 HOH HOH . J 6 HOH A 3 503 3 HOH HOH . J 6 HOH A 4 504 4 HOH HOH . J 6 HOH A 5 505 5 HOH HOH . J 6 HOH A 6 506 6 HOH HOH . J 6 HOH A 7 507 7 HOH HOH . J 6 HOH A 8 508 8 HOH HOH . J 6 HOH A 9 509 9 HOH HOH . J 6 HOH A 10 510 10 HOH HOH . J 6 HOH A 11 511 11 HOH HOH . J 6 HOH A 12 512 12 HOH HOH . J 6 HOH A 13 513 13 HOH HOH . J 6 HOH A 14 514 14 HOH HOH . J 6 HOH A 15 515 15 HOH HOH . J 6 HOH A 16 516 16 HOH HOH . J 6 HOH A 17 517 17 HOH HOH . J 6 HOH A 18 518 18 HOH HOH . J 6 HOH A 19 519 19 HOH HOH . J 6 HOH A 20 520 20 HOH HOH . J 6 HOH A 21 521 21 HOH HOH . J 6 HOH A 22 522 22 HOH HOH . J 6 HOH A 23 523 23 HOH HOH . J 6 HOH A 24 524 24 HOH HOH . J 6 HOH A 25 525 25 HOH HOH . J 6 HOH A 26 526 26 HOH HOH . J 6 HOH A 27 527 27 HOH HOH . J 6 HOH A 28 528 28 HOH HOH . J 6 HOH A 29 529 29 HOH HOH . J 6 HOH A 30 530 30 HOH HOH . J 6 HOH A 31 531 31 HOH HOH . J 6 HOH A 32 532 32 HOH HOH . J 6 HOH A 33 533 33 HOH HOH . J 6 HOH A 34 534 34 HOH HOH . J 6 HOH A 35 535 35 HOH HOH . J 6 HOH A 36 536 36 HOH HOH . J 6 HOH A 37 537 37 HOH HOH . J 6 HOH A 38 538 38 HOH HOH . J 6 HOH A 39 539 39 HOH HOH . J 6 HOH A 40 540 40 HOH HOH . J 6 HOH A 41 541 41 HOH HOH . J 6 HOH A 42 542 42 HOH HOH . J 6 HOH A 43 543 43 HOH HOH . J 6 HOH A 44 544 44 HOH HOH . J 6 HOH A 45 545 45 HOH HOH . J 6 HOH A 46 546 46 HOH HOH . J 6 HOH A 47 547 47 HOH HOH . J 6 HOH A 48 548 48 HOH HOH . J 6 HOH A 49 549 49 HOH HOH . J 6 HOH A 50 550 50 HOH HOH . J 6 HOH A 51 551 51 HOH HOH . J 6 HOH A 52 552 52 HOH HOH . J 6 HOH A 53 553 53 HOH HOH . J 6 HOH A 54 554 54 HOH HOH . J 6 HOH A 55 555 55 HOH HOH . J 6 HOH A 56 556 56 HOH HOH . J 6 HOH A 57 557 57 HOH HOH . J 6 HOH A 58 558 58 HOH HOH . J 6 HOH A 59 559 59 HOH HOH . J 6 HOH A 60 560 60 HOH HOH . J 6 HOH A 61 561 61 HOH HOH . J 6 HOH A 62 562 62 HOH HOH . J 6 HOH A 63 563 63 HOH HOH . J 6 HOH A 64 564 64 HOH HOH . J 6 HOH A 65 565 65 HOH HOH . J 6 HOH A 66 566 66 HOH HOH . J 6 HOH A 67 567 67 HOH HOH . J 6 HOH A 68 568 68 HOH HOH . J 6 HOH A 69 569 69 HOH HOH . J 6 HOH A 70 570 70 HOH HOH . J 6 HOH A 71 571 71 HOH HOH . J 6 HOH A 72 572 72 HOH HOH . J 6 HOH A 73 573 73 HOH HOH . J 6 HOH A 74 574 74 HOH HOH . J 6 HOH A 75 575 75 HOH HOH . J 6 HOH A 76 576 76 HOH HOH . J 6 HOH A 77 577 77 HOH HOH . J 6 HOH A 78 578 78 HOH HOH . J 6 HOH A 79 579 79 HOH HOH . J 6 HOH A 80 580 80 HOH HOH . J 6 HOH A 81 581 81 HOH HOH . J 6 HOH A 82 582 82 HOH HOH . J 6 HOH A 83 583 83 HOH HOH . J 6 HOH A 84 584 84 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 41.505 _atom_site.Cartn_y 62.123 _atom_site.Cartn_z 41.486 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 3.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 105 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #