data_1O0A # _model_server_result.job_id 5eH5d9aINEeFD7eDtXp-CA _model_server_result.datetime_utc '2024-12-26 19:39:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o0a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 1O0A # _exptl.entry_id 1O0A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1O0A _cell.length_a 60.801 _cell.length_b 60.801 _cell.length_c 107.778 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O0A _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 30.4005 52.655211 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -30.4005 52.655211 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.316 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 373 n n C1 C6 RET sing 374 n n C1 C16 RET sing 375 n n C1 C17 RET sing 376 n n C2 C3 RET sing 377 n n C2 H21 RET sing 378 n n C2 H22 RET sing 379 n n C3 C4 RET sing 380 n n C3 H31 RET sing 381 n n C3 H32 RET sing 382 n n C4 C5 RET sing 383 n n C4 H41 RET sing 384 n n C4 H42 RET sing 385 n n C5 C6 RET doub 386 n n C5 C18 RET sing 387 n n C6 C7 RET sing 388 n n C7 C8 RET doub 389 e n C7 H7 RET sing 390 n n C8 C9 RET sing 391 n n C8 H8 RET sing 392 n n C9 C10 RET doub 393 e n C9 C19 RET sing 394 n n C10 C11 RET sing 395 n n C10 H10 RET sing 396 n n C11 C12 RET doub 397 e n C11 H11 RET sing 398 n n C12 C13 RET sing 399 n n C12 H12 RET sing 400 n n C13 C14 RET doub 401 e n C13 C20 RET sing 402 n n C14 C15 RET sing 403 n n C14 H14 RET sing 404 n n C15 O1 RET doub 405 n n C15 H15 RET sing 406 n n C16 H161 RET sing 407 n n C16 H162 RET sing 408 n n C16 H163 RET sing 409 n n C17 H171 RET sing 410 n n C17 H172 RET sing 411 n n C17 H173 RET sing 412 n n C18 H181 RET sing 413 n n C18 H182 RET sing 414 n n C18 H183 RET sing 415 n n C19 H191 RET sing 416 n n C19 H192 RET sing 417 n n C19 H193 RET sing 418 n n C20 H201 RET sing 419 n n C20 H202 RET sing 420 n n C20 H203 RET sing 421 n n # _atom_sites.entry_id 1O0A _atom_sites.fract_transf_matrix[1][1] 0.016447 _atom_sites.fract_transf_matrix[1][2] 0.009496 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018991 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 LI1 A 1 601 601 LI1 LI1 . D 3 LI1 A 1 602 602 LI1 LI1 . E 3 LI1 A 1 603 603 LI1 LI1 . F 3 LI1 A 1 604 604 LI1 LI1 . G 3 LI1 A 1 605 605 LI1 LI1 . H 3 LI1 A 1 606 606 LI1 LI1 . I 3 LI1 A 1 607 607 LI1 LI1 . J 3 LI1 A 1 608 608 LI1 LI1 . K 3 LI1 A 1 609 609 LI1 LI1 . L 3 LI1 A 1 610 610 LI1 LI1 . M 3 LI1 A 1 611 611 LI1 LI1 . N 3 LI1 A 1 612 612 LI1 LI1 . O 3 LI1 A 1 613 613 LI1 LI1 . P 4 SQU A 1 701 701 SQU SQU . Q 5 HOH A 1 401 401 HOH HOH . Q 5 HOH A 2 402 402 HOH HOH . Q 5 HOH A 3 403 403 HOH HOH . Q 5 HOH A 4 404 404 HOH HOH . Q 5 HOH A 5 405 405 HOH HOH . Q 5 HOH A 6 406 406 HOH HOH . Q 5 HOH A 7 407 407 HOH HOH . Q 5 HOH A 8 411 411 HOH HOH . Q 5 HOH A 9 412 412 HOH HOH . Q 5 HOH A 10 413 413 HOH HOH . Q 5 HOH A 11 414 414 HOH HOH . Q 5 HOH A 12 415 415 HOH HOH . Q 5 HOH A 13 416 416 HOH HOH . Q 5 HOH A 14 417 417 HOH HOH . Q 5 HOH A 15 418 418 HOH HOH . Q 5 HOH A 16 419 419 HOH HOH . Q 5 HOH A 17 420 420 HOH HOH . Q 5 HOH A 18 501 501 HOH HOH . Q 5 HOH A 19 502 502 HOH HOH . Q 5 HOH A 20 511 511 HOH HOH . Q 5 HOH A 21 512 512 HOH HOH . Q 5 HOH A 22 513 513 HOH HOH . Q 5 HOH A 23 514 514 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 14.929 45.242 0.278 0.6 18.25 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 14.682 46.164 -0.906 0.6 25.7 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 14.029 47.443 -0.564 0.6 30.94 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 14.782 48.166 0.528 0.6 22.6 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 14.981 47.282 1.737 0.6 22.23 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 15.141 45.958 1.619 0.6 19.13 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 15.541 45.182 2.795 0.6 16.42 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 15.793 43.879 3.09 0.6 16.63 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 16.293 43.549 4.431 0.6 12.61 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 16.463 42.223 4.182 0.6 22.22 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 16.954 41.266 5.186 0.6 22.3 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 17.108 39.933 4.878 0.6 22.71 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 17.569 39.094 5.992 0.6 19.59 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 17.483 37.816 6.439 0.6 28.79 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 17.369 36.951 5.251 0.6 24.17 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 13.66 44.338 0.373 0.6 20.65 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 16.159 44.376 -0.142 0.6 18.61 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 15.245 48.085 2.987 0.6 16.08 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 16.468 43.995 5.847 0.6 17.52 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 18.033 39.334 7.402 0.6 23.55 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 674 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #