data_1O0D
#
_model_server_result.job_id            NwyzKGEgDEkFwvFU0Onjug 
_model_server_result.datetime_utc      '2024-12-21 13:23:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1o0d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":248}' 
#
_entry.id    1O0D 
#
_exptl.entry_id    1O0D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.538 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2-{2-[(5-CARBAMIMIDOYL-1-METHYL-1H-PYRROL-2-YLMETHYL)-CARBAMOYL]-PYRROL-1-YL}- 1-CYCLOHEXYLMETHYL-2-OXO-ETHYLAMINO)-ACETIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.06 
_cell.angle_gamma         90 
_cell.entry_id            1O0D 
_cell.length_a            70.88 
_cell.length_b            71.96 
_cell.length_c            73.52 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1O0D 
_symmetry.cell_setting             monoclinic 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G 1 1 
A,B,C,D,E,F,G 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
covale ? covale1 C C4 SIN 1 D SIN 55 1_555 C N TYR 2 D TYR 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 C C ILE 5 D ILE 59 1_555 C N HYP 6 D HYP 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 C C HYP 6 D HYP 60 1_555 C N GLU 7 D GLU 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 C C GLU 8 D GLU 62 1_555 C N SMF 9 D SMF 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale5 C C SMF 9 D SMF 63 1_555 C N ALC 10 D ALC 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale6 C C ALC 10 D ALC 64 1_555 C N GLN 11 D GLN 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C23 H32 N6 O4' 
_chem_comp.formula_weight    456.538 
_chem_comp.id                163 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2-{2-[(5-CARBAMIMIDOYL-1-METHYL-1H-PYRROL-2-YLMETHYL)-CARBAMOYL]-PYRROL-1-YL}- 1-CYCLOHEXYLMETHYL-2-OXO-ETHYLAMINO)-ACETIC ACID' 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1O0D 
_atom_sites.fract_transf_matrix[1][1]    0.014108 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002758 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013897 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013859 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 163 H 1 248 179 163 163 . 
E 5 HOH L 1 16 7 HOH HOH . 
E 5 HOH L 2 17 13 HOH HOH . 
E 5 HOH L 3 18 15 HOH HOH . 
E 5 HOH L 4 19 16 HOH HOH . 
E 5 HOH L 5 20 25 HOH HOH . 
E 5 HOH L 6 21 27 HOH HOH . 
E 5 HOH L 7 22 28 HOH HOH . 
E 5 HOH L 8 23 30 HOH HOH . 
E 5 HOH L 9 24 42 HOH HOH . 
E 5 HOH L 10 25 43 HOH HOH . 
E 5 HOH L 11 26 44 HOH HOH . 
E 5 HOH L 12 27 45 HOH HOH . 
E 5 HOH L 13 28 47 HOH HOH . 
E 5 HOH L 14 29 161 HOH HOH . 
E 5 HOH L 15 30 172 HOH HOH . 
F 5 HOH H 1 249 1 HOH HOH . 
F 5 HOH H 2 250 2 HOH HOH . 
F 5 HOH H 3 251 3 HOH HOH . 
F 5 HOH H 4 252 4 HOH HOH . 
F 5 HOH H 5 253 5 HOH HOH . 
F 5 HOH H 6 254 6 HOH HOH . 
F 5 HOH H 7 255 8 HOH HOH . 
F 5 HOH H 8 256 9 HOH HOH . 
F 5 HOH H 9 257 10 HOH HOH . 
F 5 HOH H 10 258 11 HOH HOH . 
F 5 HOH H 11 259 12 HOH HOH . 
F 5 HOH H 12 260 14 HOH HOH . 
F 5 HOH H 13 261 17 HOH HOH . 
F 5 HOH H 14 262 18 HOH HOH . 
F 5 HOH H 15 263 19 HOH HOH . 
F 5 HOH H 16 264 20 HOH HOH . 
F 5 HOH H 17 265 21 HOH HOH . 
F 5 HOH H 18 266 22 HOH HOH . 
F 5 HOH H 19 267 23 HOH HOH . 
F 5 HOH H 20 268 24 HOH HOH . 
F 5 HOH H 21 269 26 HOH HOH . 
F 5 HOH H 22 270 29 HOH HOH . 
F 5 HOH H 23 271 31 HOH HOH . 
F 5 HOH H 24 272 32 HOH HOH . 
F 5 HOH H 25 273 33 HOH HOH . 
F 5 HOH H 26 274 34 HOH HOH . 
F 5 HOH H 27 275 35 HOH HOH . 
F 5 HOH H 28 276 36 HOH HOH . 
F 5 HOH H 29 277 37 HOH HOH . 
F 5 HOH H 30 278 38 HOH HOH . 
F 5 HOH H 31 279 39 HOH HOH . 
F 5 HOH H 32 280 40 HOH HOH . 
F 5 HOH H 33 281 41 HOH HOH . 
F 5 HOH H 34 282 46 HOH HOH . 
F 5 HOH H 35 283 48 HOH HOH . 
F 5 HOH H 36 284 49 HOH HOH . 
F 5 HOH H 37 285 50 HOH HOH . 
F 5 HOH H 38 286 51 HOH HOH . 
F 5 HOH H 39 287 52 HOH HOH . 
F 5 HOH H 40 288 53 HOH HOH . 
F 5 HOH H 41 289 54 HOH HOH . 
F 5 HOH H 42 290 56 HOH HOH . 
F 5 HOH H 43 291 57 HOH HOH . 
F 5 HOH H 44 292 58 HOH HOH . 
F 5 HOH H 45 293 59 HOH HOH . 
F 5 HOH H 46 294 60 HOH HOH . 
F 5 HOH H 47 295 61 HOH HOH . 
F 5 HOH H 48 296 62 HOH HOH . 
F 5 HOH H 49 297 64 HOH HOH . 
F 5 HOH H 50 298 65 HOH HOH . 
F 5 HOH H 51 299 66 HOH HOH . 
F 5 HOH H 52 300 68 HOH HOH . 
F 5 HOH H 53 301 69 HOH HOH . 
F 5 HOH H 54 302 70 HOH HOH . 
F 5 HOH H 55 303 71 HOH HOH . 
F 5 HOH H 56 304 72 HOH HOH . 
F 5 HOH H 57 305 73 HOH HOH . 
F 5 HOH H 58 306 74 HOH HOH . 
F 5 HOH H 59 307 75 HOH HOH . 
F 5 HOH H 60 308 76 HOH HOH . 
F 5 HOH H 61 309 77 HOH HOH . 
F 5 HOH H 62 310 78 HOH HOH . 
F 5 HOH H 63 311 79 HOH HOH . 
F 5 HOH H 64 312 80 HOH HOH . 
F 5 HOH H 65 313 81 HOH HOH . 
F 5 HOH H 66 314 82 HOH HOH . 
F 5 HOH H 67 315 83 HOH HOH . 
F 5 HOH H 68 316 84 HOH HOH . 
F 5 HOH H 69 317 85 HOH HOH . 
F 5 HOH H 70 318 86 HOH HOH . 
F 5 HOH H 71 319 87 HOH HOH . 
F 5 HOH H 72 320 88 HOH HOH . 
F 5 HOH H 73 321 89 HOH HOH . 
F 5 HOH H 74 322 90 HOH HOH . 
F 5 HOH H 75 323 91 HOH HOH . 
F 5 HOH H 76 324 92 HOH HOH . 
F 5 HOH H 77 325 93 HOH HOH . 
F 5 HOH H 78 326 94 HOH HOH . 
F 5 HOH H 79 327 95 HOH HOH . 
F 5 HOH H 80 328 96 HOH HOH . 
F 5 HOH H 81 329 97 HOH HOH . 
F 5 HOH H 82 330 98 HOH HOH . 
F 5 HOH H 83 331 99 HOH HOH . 
F 5 HOH H 84 332 100 HOH HOH . 
F 5 HOH H 85 333 101 HOH HOH . 
F 5 HOH H 86 334 102 HOH HOH . 
F 5 HOH H 87 335 103 HOH HOH . 
F 5 HOH H 88 336 104 HOH HOH . 
F 5 HOH H 89 337 105 HOH HOH . 
F 5 HOH H 90 338 106 HOH HOH . 
F 5 HOH H 91 339 107 HOH HOH . 
F 5 HOH H 92 340 108 HOH HOH . 
F 5 HOH H 93 341 109 HOH HOH . 
F 5 HOH H 94 342 110 HOH HOH . 
F 5 HOH H 95 343 111 HOH HOH . 
F 5 HOH H 96 344 112 HOH HOH . 
F 5 HOH H 97 345 113 HOH HOH . 
F 5 HOH H 98 346 114 HOH HOH . 
F 5 HOH H 99 347 115 HOH HOH . 
F 5 HOH H 100 348 116 HOH HOH . 
F 5 HOH H 101 349 117 HOH HOH . 
F 5 HOH H 102 350 118 HOH HOH . 
F 5 HOH H 103 351 119 HOH HOH . 
F 5 HOH H 104 352 120 HOH HOH . 
F 5 HOH H 105 353 121 HOH HOH . 
F 5 HOH H 106 354 122 HOH HOH . 
F 5 HOH H 107 355 123 HOH HOH . 
F 5 HOH H 108 356 124 HOH HOH . 
F 5 HOH H 109 357 125 HOH HOH . 
F 5 HOH H 110 358 126 HOH HOH . 
F 5 HOH H 111 359 127 HOH HOH . 
F 5 HOH H 112 360 128 HOH HOH . 
F 5 HOH H 113 361 129 HOH HOH . 
F 5 HOH H 114 362 130 HOH HOH . 
F 5 HOH H 115 363 131 HOH HOH . 
F 5 HOH H 116 364 132 HOH HOH . 
F 5 HOH H 117 365 133 HOH HOH . 
F 5 HOH H 118 366 134 HOH HOH . 
F 5 HOH H 119 367 135 HOH HOH . 
F 5 HOH H 120 368 136 HOH HOH . 
F 5 HOH H 121 369 137 HOH HOH . 
F 5 HOH H 122 370 138 HOH HOH . 
F 5 HOH H 123 371 139 HOH HOH . 
F 5 HOH H 124 372 140 HOH HOH . 
F 5 HOH H 125 373 141 HOH HOH . 
F 5 HOH H 126 374 142 HOH HOH . 
F 5 HOH H 127 375 143 HOH HOH . 
F 5 HOH H 128 376 144 HOH HOH . 
F 5 HOH H 129 377 145 HOH HOH . 
F 5 HOH H 130 378 146 HOH HOH . 
F 5 HOH H 131 379 147 HOH HOH . 
F 5 HOH H 132 380 148 HOH HOH . 
F 5 HOH H 133 381 149 HOH HOH . 
F 5 HOH H 134 382 150 HOH HOH . 
F 5 HOH H 135 383 151 HOH HOH . 
F 5 HOH H 136 384 152 HOH HOH . 
F 5 HOH H 137 385 153 HOH HOH . 
F 5 HOH H 138 386 154 HOH HOH . 
F 5 HOH H 139 387 155 HOH HOH . 
F 5 HOH H 140 388 156 HOH HOH . 
F 5 HOH H 141 389 157 HOH HOH . 
F 5 HOH H 142 390 158 HOH HOH . 
F 5 HOH H 143 391 159 HOH HOH . 
F 5 HOH H 144 392 160 HOH HOH . 
F 5 HOH H 145 393 162 HOH HOH . 
F 5 HOH H 146 394 163 HOH HOH . 
F 5 HOH H 147 395 164 HOH HOH . 
F 5 HOH H 148 396 165 HOH HOH . 
F 5 HOH H 149 397 166 HOH HOH . 
F 5 HOH H 150 398 167 HOH HOH . 
F 5 HOH H 151 399 168 HOH HOH . 
F 5 HOH H 152 400 169 HOH HOH . 
F 5 HOH H 153 401 170 HOH HOH . 
F 5 HOH H 154 402 171 HOH HOH . 
F 5 HOH H 155 403 173 HOH HOH . 
F 5 HOH H 156 404 174 HOH HOH . 
G 5 HOH D 1 66 55 HOH HOH . 
G 5 HOH D 2 67 63 HOH HOH . 
G 5 HOH D 3 68 67 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C12 163 . . . D 4 17.228 19.644 22.751 0 5.6 ? C12 163 248 H 1 
HETATM 2 O O1 163 . . . D 4 16.349 20.313 23.263 0 5.6 ? O1 163 248 H 1 
HETATM 3 C C13 163 . . . D 4 17.506 18.25 23.291 0 5.6 ? C13 163 248 H 1 
HETATM 4 C C14 163 . . . D 4 18.189 18.334 24.674 0 5.6 ? C14 163 248 H 1 
HETATM 5 C C15 163 . . . D 4 19.668 18.737 24.535 0 5.6 ? C15 163 248 H 1 
HETATM 6 C C16 163 . . . D 4 20.141 19.43 25.833 0 5.6 ? C16 163 248 H 1 
HETATM 7 C C17 163 . . . D 4 21.629 19.841 25.707 0 5.6 ? C17 163 248 H 1 
HETATM 8 C C18 163 . . . D 4 22.508 18.6 25.412 0 5.6 ? C18 163 248 H 1 
HETATM 9 C C19 163 . . . D 4 22.022 17.888 24.126 0 5.6 ? C19 163 248 H 1 
HETATM 10 C C20 163 . . . D 4 20.536 17.482 24.268 0 5.6 ? C20 163 248 H 1 
HETATM 11 N N5 163 . . . D 4 16.241 17.512 23.418 0 5.6 ? N5 163 248 H 1 
HETATM 12 C C21 163 . . . D 4 15.764 16.657 22.324 0 5.6 ? C21 163 248 H 1 
HETATM 13 C C22 163 . . . D 4 14.764 15.656 22.853 0 5.6 ? C22 163 248 H 1 
HETATM 14 O O2 163 . . . D 4 14.749 15.37 24.04 0 5.6 ? O2 163 248 H 1 
HETATM 15 O O3 163 . . . D 4 13.97 15.129 22.092 0 5.6 ? O3 163 248 H 1 
HETATM 16 O O 163 . . . D 4 16.241 20.891 19.367 0 5.6 ? O 163 248 H 1 
HETATM 17 C C7 163 . . . D 4 16.481 21.591 20.338 0 5.6 ? C7 163 248 H 1 
HETATM 18 C C8 163 . . . D 4 17.817 21.476 21.054 0 5.6 ? C8 163 248 H 1 
HETATM 19 C C9 163 . . . D 4 18.975 21.632 20.099 0 5.6 ? C9 163 248 H 1 
HETATM 20 C C10 163 . . . D 4 19.666 20.527 20.044 0 5.6 ? C10 163 248 H 1 
HETATM 21 C C11 163 . . . D 4 19.057 19.492 20.952 0 5.6 ? C11 163 248 H 1 
HETATM 22 N N4 163 . . . D 4 17.956 20.15 21.698 0 5.6 ? N4 163 248 H 1 
HETATM 23 N N 163 . . . D 4 10.289 23.388 24.128 0 5.6 ? N 163 248 H 1 
HETATM 24 C C 163 . . . D 4 10.906 22.211 24.012 0 5.6 ? C 163 248 H 1 
HETATM 25 N N1 163 . . . D 4 10.781 21.29 24.961 0 5.6 ? N1 163 248 H 1 
HETATM 26 C C1 163 . . . D 4 11.738 21.918 22.808 0 5.6 ? C1 163 248 H 1 
HETATM 27 N N2 163 . . . D 4 12.661 22.755 22.197 0 5.6 ? N2 163 248 H 1 
HETATM 28 C C2 163 . . . D 4 13.012 24.132 22.635 0 5.6 ? C2 163 248 H 1 
HETATM 29 C C3 163 . . . D 4 11.724 20.753 22.093 0 5.6 ? C3 163 248 H 1 
HETATM 30 C C4 163 . . . D 4 12.638 20.883 21.048 0 5.6 ? C4 163 248 H 1 
HETATM 31 C C5 163 . . . D 4 13.194 22.102 21.131 0 5.6 ? C5 163 248 H 1 
HETATM 32 C C6 163 . . . D 4 14.24 22.644 20.186 0 5.6 ? C6 163 248 H 1 
HETATM 33 N N3 163 . . . D 4 15.565 22.478 20.811 0 5.6 ? N3 163 248 H 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#