data_1O27
#
_model_server_result.job_id            FKEkV7y4YPkMmdMqFWeUjg 
_model_server_result.datetime_utc      '2024-11-05 04:30:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1o27 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":608}' 
#
_entry.id    1O27 
#
_exptl.entry_id    1O27 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              387.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1O27 
_cell.length_a            54.349 
_cell.length_b            116.428 
_cell.length_c            140.557 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1O27 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 J N N 
? 2 L N N 
#
_chem_comp.formula           'C9 H12 Br N2 O8 P' 
_chem_comp.formula_weight    387.078 
_chem_comp.id                BRU 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type              'dna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 BRU sing 70 n n 
N1 C6 BRU sing 71 n n 
N1 C1' BRU sing 72 n n 
C2 N3 BRU sing 73 n n 
C2 O2 BRU doub 74 n n 
N3 C4 BRU sing 75 n n 
N3 HN3 BRU sing 76 n n 
C4 C5 BRU sing 77 n n 
C4 O4 BRU doub 78 n n 
C5 C6 BRU doub 79 n n 
C5 BR BRU sing 80 n n 
C6 H6 BRU sing 81 n n 
C1' C2' BRU sing 82 n n 
C1' O4' BRU sing 83 n n 
C1' H1' BRU sing 84 n n 
C2' C3' BRU sing 85 n n 
C2' H2' BRU sing 86 n n 
C2' "H2''" BRU sing 87 n n 
C3' C4' BRU sing 88 n n 
C3' O3' BRU sing 89 n n 
C3' H3' BRU sing 90 n n 
C4' O4' BRU sing 91 n n 
C4' C5' BRU sing 92 n n 
C4' H4' BRU sing 93 n n 
O3' HO3' BRU sing 94 n n 
C5' O5' BRU sing 95 n n 
C5' H5' BRU sing 96 n n 
C5' "H5''" BRU sing 97 n n 
O5' P BRU sing 98 n n 
P OP1 BRU doub 99 n n 
P OP2 BRU sing 100 n n 
P OP3 BRU sing 101 n n 
OP2 HOP2 BRU sing 102 n n 
OP3 HOP3 BRU sing 103 n n 
#
_atom_sites.entry_id                     1O27 
_atom_sites.fract_transf_matrix[1][1]    0.0184 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008589 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007115 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 BRU A 1 603 603 BRU BRU . 
F 3 FAD A 1 615 615 FAD FAD . 
G 2 BRU B 1 608 608 BRU BRU . 
H 3 FAD B 1 610 610 FAD FAD . 
I 3 FAD C 1 605 605 FAD FAD . 
J 2 BRU C 1 613 613 BRU BRU . 
K 3 FAD D 1 600 600 FAD FAD . 
L 2 BRU D 1 618 618 BRU BRU . 
M 4 HOH A 1 307 307 HOH HOH . 
M 4 HOH A 2 312 312 HOH HOH . 
M 4 HOH A 3 317 317 HOH HOH . 
M 4 HOH A 4 320 320 HOH HOH . 
M 4 HOH A 5 321 321 HOH HOH . 
M 4 HOH A 6 324 324 HOH HOH . 
M 4 HOH A 7 325 325 HOH HOH . 
M 4 HOH A 8 328 328 HOH HOH . 
M 4 HOH A 9 333 333 HOH HOH . 
M 4 HOH A 10 335 335 HOH HOH . 
M 4 HOH A 11 337 337 HOH HOH . 
M 4 HOH A 12 341 341 HOH HOH . 
M 4 HOH A 13 342 342 HOH HOH . 
M 4 HOH A 14 346 346 HOH HOH . 
M 4 HOH A 15 347 347 HOH HOH . 
M 4 HOH A 16 350 350 HOH HOH . 
M 4 HOH A 17 362 362 HOH HOH . 
M 4 HOH A 18 364 364 HOH HOH . 
M 4 HOH A 19 365 365 HOH HOH . 
M 4 HOH A 20 368 368 HOH HOH . 
M 4 HOH A 21 371 371 HOH HOH . 
M 4 HOH A 22 374 374 HOH HOH . 
M 4 HOH A 23 377 377 HOH HOH . 
M 4 HOH A 24 380 380 HOH HOH . 
M 4 HOH A 25 386 386 HOH HOH . 
M 4 HOH A 26 387 387 HOH HOH . 
M 4 HOH A 27 390 390 HOH HOH . 
M 4 HOH A 28 394 394 HOH HOH . 
M 4 HOH A 29 398 398 HOH HOH . 
M 4 HOH A 30 399 399 HOH HOH . 
M 4 HOH A 31 405 405 HOH HOH . 
M 4 HOH A 32 407 407 HOH HOH . 
M 4 HOH A 33 411 411 HOH HOH . 
M 4 HOH A 34 413 413 HOH HOH . 
M 4 HOH A 35 414 414 HOH HOH . 
M 4 HOH A 36 420 420 HOH HOH . 
M 4 HOH A 37 427 427 HOH HOH . 
M 4 HOH A 38 429 429 HOH HOH . 
M 4 HOH A 39 431 431 HOH HOH . 
M 4 HOH A 40 433 433 HOH HOH . 
M 4 HOH A 41 440 440 HOH HOH . 
M 4 HOH A 42 442 442 HOH HOH . 
M 4 HOH A 43 452 452 HOH HOH . 
M 4 HOH A 44 460 460 HOH HOH . 
M 4 HOH A 45 462 462 HOH HOH . 
M 4 HOH A 46 466 466 HOH HOH . 
M 4 HOH A 47 467 467 HOH HOH . 
M 4 HOH A 48 469 469 HOH HOH . 
M 4 HOH A 49 472 472 HOH HOH . 
M 4 HOH A 50 473 473 HOH HOH . 
M 4 HOH A 51 475 475 HOH HOH . 
M 4 HOH A 52 484 484 HOH HOH . 
M 4 HOH A 53 485 485 HOH HOH . 
M 4 HOH A 54 493 493 HOH HOH . 
M 4 HOH A 55 495 495 HOH HOH . 
N 4 HOH B 1 302 302 HOH HOH . 
N 4 HOH B 2 305 305 HOH HOH . 
N 4 HOH B 3 311 311 HOH HOH . 
N 4 HOH B 4 313 313 HOH HOH . 
N 4 HOH B 5 315 315 HOH HOH . 
N 4 HOH B 6 318 318 HOH HOH . 
N 4 HOH B 7 319 319 HOH HOH . 
N 4 HOH B 8 322 322 HOH HOH . 
N 4 HOH B 9 330 330 HOH HOH . 
N 4 HOH B 10 332 332 HOH HOH . 
N 4 HOH B 11 343 343 HOH HOH . 
N 4 HOH B 12 345 345 HOH HOH . 
N 4 HOH B 13 348 348 HOH HOH . 
N 4 HOH B 14 353 353 HOH HOH . 
N 4 HOH B 15 357 357 HOH HOH . 
N 4 HOH B 16 363 363 HOH HOH . 
N 4 HOH B 17 372 372 HOH HOH . 
N 4 HOH B 18 373 373 HOH HOH . 
N 4 HOH B 19 379 379 HOH HOH . 
N 4 HOH B 20 382 382 HOH HOH . 
N 4 HOH B 21 383 383 HOH HOH . 
N 4 HOH B 22 385 385 HOH HOH . 
N 4 HOH B 23 389 389 HOH HOH . 
N 4 HOH B 24 391 391 HOH HOH . 
N 4 HOH B 25 393 393 HOH HOH . 
N 4 HOH B 26 396 396 HOH HOH . 
N 4 HOH B 27 397 397 HOH HOH . 
N 4 HOH B 28 401 401 HOH HOH . 
N 4 HOH B 29 403 403 HOH HOH . 
N 4 HOH B 30 406 406 HOH HOH . 
N 4 HOH B 31 410 410 HOH HOH . 
N 4 HOH B 32 415 415 HOH HOH . 
N 4 HOH B 33 416 416 HOH HOH . 
N 4 HOH B 34 425 425 HOH HOH . 
N 4 HOH B 35 430 430 HOH HOH . 
N 4 HOH B 36 439 439 HOH HOH . 
N 4 HOH B 37 445 445 HOH HOH . 
N 4 HOH B 38 448 448 HOH HOH . 
N 4 HOH B 39 450 450 HOH HOH . 
N 4 HOH B 40 453 453 HOH HOH . 
N 4 HOH B 41 454 454 HOH HOH . 
N 4 HOH B 42 455 455 HOH HOH . 
N 4 HOH B 43 468 468 HOH HOH . 
N 4 HOH B 44 474 474 HOH HOH . 
N 4 HOH B 45 481 481 HOH HOH . 
N 4 HOH B 46 486 486 HOH HOH . 
N 4 HOH B 47 487 487 HOH HOH . 
N 4 HOH B 48 488 488 HOH HOH . 
N 4 HOH B 49 491 491 HOH HOH . 
N 4 HOH B 50 492 492 HOH HOH . 
N 4 HOH B 51 499 499 HOH HOH . 
N 4 HOH B 52 500 500 HOH HOH . 
O 4 HOH C 1 304 304 HOH HOH . 
O 4 HOH C 2 306 306 HOH HOH . 
O 4 HOH C 3 309 309 HOH HOH . 
O 4 HOH C 4 310 310 HOH HOH . 
O 4 HOH C 5 314 314 HOH HOH . 
O 4 HOH C 6 316 316 HOH HOH . 
O 4 HOH C 7 323 323 HOH HOH . 
O 4 HOH C 8 326 326 HOH HOH . 
O 4 HOH C 9 327 327 HOH HOH . 
O 4 HOH C 10 329 329 HOH HOH . 
O 4 HOH C 11 331 331 HOH HOH . 
O 4 HOH C 12 338 338 HOH HOH . 
O 4 HOH C 13 339 339 HOH HOH . 
O 4 HOH C 14 356 356 HOH HOH . 
O 4 HOH C 15 359 359 HOH HOH . 
O 4 HOH C 16 361 361 HOH HOH . 
O 4 HOH C 17 370 370 HOH HOH . 
O 4 HOH C 18 375 375 HOH HOH . 
O 4 HOH C 19 376 376 HOH HOH . 
O 4 HOH C 20 378 378 HOH HOH . 
O 4 HOH C 21 395 395 HOH HOH . 
O 4 HOH C 22 400 400 HOH HOH . 
O 4 HOH C 23 402 402 HOH HOH . 
O 4 HOH C 24 408 408 HOH HOH . 
O 4 HOH C 25 417 417 HOH HOH . 
O 4 HOH C 26 418 418 HOH HOH . 
O 4 HOH C 27 422 422 HOH HOH . 
O 4 HOH C 28 423 423 HOH HOH . 
O 4 HOH C 29 424 424 HOH HOH . 
O 4 HOH C 30 426 426 HOH HOH . 
O 4 HOH C 31 432 432 HOH HOH . 
O 4 HOH C 32 438 438 HOH HOH . 
O 4 HOH C 33 441 441 HOH HOH . 
O 4 HOH C 34 444 444 HOH HOH . 
O 4 HOH C 35 446 446 HOH HOH . 
O 4 HOH C 36 447 447 HOH HOH . 
O 4 HOH C 37 449 449 HOH HOH . 
O 4 HOH C 38 451 451 HOH HOH . 
O 4 HOH C 39 456 456 HOH HOH . 
O 4 HOH C 40 457 457 HOH HOH . 
O 4 HOH C 41 459 459 HOH HOH . 
O 4 HOH C 42 461 461 HOH HOH . 
O 4 HOH C 43 463 463 HOH HOH . 
O 4 HOH C 44 465 465 HOH HOH . 
O 4 HOH C 45 471 471 HOH HOH . 
O 4 HOH C 46 477 477 HOH HOH . 
O 4 HOH C 47 482 482 HOH HOH . 
O 4 HOH C 48 483 483 HOH HOH . 
O 4 HOH C 49 489 489 HOH HOH . 
O 4 HOH C 50 494 494 HOH HOH . 
O 4 HOH C 51 496 496 HOH HOH . 
O 4 HOH C 52 497 497 HOH HOH . 
O 4 HOH C 53 501 501 HOH HOH . 
P 4 HOH D 1 301 301 HOH HOH . 
P 4 HOH D 2 303 303 HOH HOH . 
P 4 HOH D 3 308 308 HOH HOH . 
P 4 HOH D 4 334 334 HOH HOH . 
P 4 HOH D 5 336 336 HOH HOH . 
P 4 HOH D 6 340 340 HOH HOH . 
P 4 HOH D 7 344 344 HOH HOH . 
P 4 HOH D 8 349 349 HOH HOH . 
P 4 HOH D 9 351 351 HOH HOH . 
P 4 HOH D 10 352 352 HOH HOH . 
P 4 HOH D 11 354 354 HOH HOH . 
P 4 HOH D 12 355 355 HOH HOH . 
P 4 HOH D 13 358 358 HOH HOH . 
P 4 HOH D 14 360 360 HOH HOH . 
P 4 HOH D 15 366 366 HOH HOH . 
P 4 HOH D 16 367 367 HOH HOH . 
P 4 HOH D 17 369 369 HOH HOH . 
P 4 HOH D 18 381 381 HOH HOH . 
P 4 HOH D 19 384 384 HOH HOH . 
P 4 HOH D 20 388 388 HOH HOH . 
P 4 HOH D 21 392 392 HOH HOH . 
P 4 HOH D 22 404 404 HOH HOH . 
P 4 HOH D 23 409 409 HOH HOH . 
P 4 HOH D 24 412 412 HOH HOH . 
P 4 HOH D 25 419 419 HOH HOH . 
P 4 HOH D 26 421 421 HOH HOH . 
P 4 HOH D 27 428 428 HOH HOH . 
P 4 HOH D 28 434 434 HOH HOH . 
P 4 HOH D 29 435 435 HOH HOH . 
P 4 HOH D 30 436 436 HOH HOH . 
P 4 HOH D 31 437 437 HOH HOH . 
P 4 HOH D 32 443 443 HOH HOH . 
P 4 HOH D 33 458 458 HOH HOH . 
P 4 HOH D 34 464 464 HOH HOH . 
P 4 HOH D 35 470 470 HOH HOH . 
P 4 HOH D 36 476 476 HOH HOH . 
P 4 HOH D 37 478 478 HOH HOH . 
P 4 HOH D 38 479 479 HOH HOH . 
P 4 HOH D 39 480 480 HOH HOH . 
P 4 HOH D 40 490 490 HOH HOH . 
P 4 HOH D 41 498 498 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 BRU . . . G 2 26.706 39.101 97.556 1 25.15 ? N1 BRU 608 B 1 
HETATM 2 C C2 BRU . . . G 2 26.183 38.169 98.562 1 24.84 ? C2 BRU 608 B 1 
HETATM 3 N N3 BRU . . . G 2 24.835 37.785 98.335 1 24.88 ? N3 BRU 608 B 1 
HETATM 4 C C4 BRU . . . G 2 23.959 38.202 97.284 1 23.79 ? C4 BRU 608 B 1 
HETATM 5 C C5 BRU . . . G 2 24.529 39.141 96.347 1 26.92 ? C5 BRU 608 B 1 
HETATM 6 C C6 BRU . . . G 2 25.813 39.521 96.508 1 26.66 ? C6 BRU 608 B 1 
HETATM 7 O O2 BRU . . . G 2 26.816 37.738 99.518 1 26.91 ? O2 BRU 608 B 1 
HETATM 8 O O4 BRU . . . G 2 22.814 37.78 97.241 1 23.87 ? O4 BRU 608 B 1 
HETATM 9 BR BR BRU . . . G 2 23.365 39.791 94.978 1 29.68 ? BR BRU 608 B 1 
HETATM 10 C C1' BRU . . . G 2 28.116 39.63 97.605 1 25.3 ? C1' BRU 608 B 1 
HETATM 11 C C2' BRU . . . G 2 28.891 38.291 97.259 1 24.7 ? C2' BRU 608 B 1 
HETATM 12 C C3' BRU . . . G 2 30.119 38.859 96.427 1 25.7 ? C3' BRU 608 B 1 
HETATM 13 C C4' BRU . . . G 2 29.559 39.998 95.559 1 24.03 ? C4' BRU 608 B 1 
HETATM 14 O O3' BRU . . . G 2 31.072 39.444 97.321 1 26.64 ? O3' BRU 608 B 1 
HETATM 15 O O4' BRU . . . G 2 28.542 40.567 96.506 1 24.24 ? O4' BRU 608 B 1 
HETATM 16 C C5' BRU . . . G 2 28.906 39.498 94.224 1 25.4 ? C5' BRU 608 B 1 
HETATM 17 O O5' BRU . . . G 2 28.056 38.33 94.441 1 24.33 ? O5' BRU 608 B 1 
HETATM 18 P P BRU . . . G 2 27.27 37.548 93.339 1 24.96 ? P BRU 608 B 1 
HETATM 19 O OP1 BRU . . . G 2 26.884 36.237 93.926 1 24.29 ? OP1 BRU 608 B 1 
HETATM 20 O OP2 BRU . . . G 2 26.048 38.266 92.961 1 24.93 ? OP2 BRU 608 B 1 
HETATM 21 O OP3 BRU . . . G 2 28.106 37.341 92.141 1 23.36 ? OP3 BRU 608 B 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           21 
#