data_1O2H # _model_server_result.job_id YIpi37QSRWrm3YF4t-W8iw _model_server_result.datetime_utc '2024-11-29 04:58:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o2h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":246}' # _entry.id 1O2H # _exptl.entry_id 1O2H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.4 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{5-[AMINO(IMINIO)METHYL]-1H-INDOL-2-YL}-6-(CYCLOPENTYLOXY)BENZENOLATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1O2H _cell.length_a 63.71 _cell.length_b 62.25 _cell.length_c 70.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O2H _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc1 A OE2 GLU 52 A GLU 70 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc5 B CA CA . A CA 247 1_555 D O HOH . A HOH 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc6 B CA CA . A CA 247 1_555 D O HOH . A HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? # _chem_comp.formula 'C20 H21 N3 O2' _chem_comp.formula_weight 335.4 _chem_comp.id CR3 _chem_comp.mon_nstd_flag . _chem_comp.name 2-{5-[AMINO(IMINIO)METHYL]-1H-INDOL-2-YL}-6-(CYCLOPENTYLOXY)BENZENOLATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CRA_10433 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CR3 doub 70 n y C1 C6 CR3 sing 71 n y C1 C7 CR3 sing 72 n n C2 C3 CR3 sing 73 n y C2 HC2 CR3 sing 74 n n C3 C4 CR3 doub 75 n y C3 HC3 CR3 sing 76 n n C4 C5 CR3 sing 77 n y C4 N3 CR3 sing 78 n y C5 C6 CR3 doub 79 n y C5 CN4 CR3 sing 80 n y C6 HC6 CR3 sing 81 n n C7 N1 CR3 sing 82 n n C7 N2 CR3 doub 83 n n N1 HH11 CR3 sing 84 n n N1 HH12 CR3 sing 85 n n N2 HH21 CR3 sing 86 n n N2 HH22 CR3 sing 87 n n N3 C8 CR3 sing 88 n y N3 HN3 CR3 sing 89 n n CN4 C8 CR3 doub 90 n y CN4 HCN4 CR3 sing 91 n n C8 C1' CR3 sing 92 n y C1' C2' CR3 doub 93 n y C1' C6' CR3 sing 94 n y C2' C3' CR3 sing 95 n y C2' HC2' CR3 sing 96 n n C3' C4' CR3 doub 97 n y C3' HC3' CR3 sing 98 n n C4' C5' CR3 sing 99 n y C4' HC4' CR3 sing 100 n n C5' O5' CR3 sing 101 n n C5' C6' CR3 doub 102 n y O5' C2B CR3 sing 103 n n C6' O6' CR3 sing 104 n n C1B C2B CR3 sing 105 n n C1B C5B CR3 sing 106 n n C1B H1A CR3 sing 107 n n C1B H1B CR3 sing 108 n n C2B C3B CR3 sing 109 n n C2B H2A CR3 sing 110 n n C3B C4B CR3 sing 111 n n C3B H3A CR3 sing 112 n n C3B H3B CR3 sing 113 n n C4B C5B CR3 sing 114 n n C4B H4A CR3 sing 115 n n C4B H4B CR3 sing 116 n n C5B H5A CR3 sing 117 n n C5B H5B CR3 sing 118 n n # _atom_sites.entry_id 1O2H _atom_sites.fract_transf_matrix[1][1] 0.015696 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014284 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 247 247 CA CA . C 3 CR3 A 1 246 246 CR3 IND . D 4 HOH A 1 248 248 HOH HOH . D 4 HOH A 2 249 249 HOH HOH . D 4 HOH A 3 250 250 HOH HOH . D 4 HOH A 4 252 252 HOH HOH . D 4 HOH A 5 253 253 HOH HOH . D 4 HOH A 6 254 254 HOH HOH . D 4 HOH A 7 255 255 HOH HOH . D 4 HOH A 8 256 256 HOH HOH . D 4 HOH A 9 258 258 HOH HOH . D 4 HOH A 10 259 259 HOH HOH . D 4 HOH A 11 261 261 HOH HOH . D 4 HOH A 12 262 262 HOH HOH . D 4 HOH A 13 263 263 HOH HOH . D 4 HOH A 14 264 264 HOH HOH . D 4 HOH A 15 266 266 HOH HOH . D 4 HOH A 16 267 267 HOH HOH . D 4 HOH A 17 268 268 HOH HOH . D 4 HOH A 18 270 270 HOH HOH . D 4 HOH A 19 272 272 HOH HOH . D 4 HOH A 20 273 273 HOH HOH . D 4 HOH A 21 274 274 HOH HOH . D 4 HOH A 22 275 275 HOH HOH . D 4 HOH A 23 277 277 HOH HOH . D 4 HOH A 24 278 278 HOH HOH . D 4 HOH A 25 280 280 HOH HOH . D 4 HOH A 26 281 281 HOH HOH . D 4 HOH A 27 282 282 HOH HOH . D 4 HOH A 28 283 283 HOH HOH . D 4 HOH A 29 284 284 HOH HOH . D 4 HOH A 30 285 285 HOH HOH . D 4 HOH A 31 286 286 HOH HOH . D 4 HOH A 32 287 287 HOH HOH . D 4 HOH A 33 288 288 HOH HOH . D 4 HOH A 34 289 289 HOH HOH . D 4 HOH A 35 290 290 HOH HOH . D 4 HOH A 36 291 291 HOH HOH . D 4 HOH A 37 292 292 HOH HOH . D 4 HOH A 38 293 293 HOH HOH . D 4 HOH A 39 294 294 HOH HOH . D 4 HOH A 40 295 295 HOH HOH . D 4 HOH A 41 296 296 HOH HOH . D 4 HOH A 42 297 297 HOH HOH . D 4 HOH A 43 299 299 HOH HOH . D 4 HOH A 44 300 300 HOH HOH . D 4 HOH A 45 302 302 HOH HOH . D 4 HOH A 46 308 308 HOH HOH . D 4 HOH A 47 309 309 HOH HOH . D 4 HOH A 48 312 312 HOH HOH . D 4 HOH A 49 315 315 HOH HOH . D 4 HOH A 50 318 318 HOH HOH . D 4 HOH A 51 321 321 HOH HOH . D 4 HOH A 52 322 322 HOH HOH . D 4 HOH A 53 323 323 HOH HOH . D 4 HOH A 54 326 326 HOH HOH . D 4 HOH A 55 327 327 HOH HOH . D 4 HOH A 56 328 328 HOH HOH . D 4 HOH A 57 331 331 HOH HOH . D 4 HOH A 58 333 333 HOH HOH . D 4 HOH A 59 335 335 HOH HOH . D 4 HOH A 60 336 336 HOH HOH . D 4 HOH A 61 338 338 HOH HOH . D 4 HOH A 62 339 339 HOH HOH . D 4 HOH A 63 342 342 HOH HOH . D 4 HOH A 64 346 346 HOH HOH . D 4 HOH A 65 348 348 HOH HOH . D 4 HOH A 66 349 349 HOH HOH . D 4 HOH A 67 351 351 HOH HOH . D 4 HOH A 68 352 352 HOH HOH . D 4 HOH A 69 354 354 HOH HOH . D 4 HOH A 70 356 356 HOH HOH . D 4 HOH A 71 358 358 HOH HOH . D 4 HOH A 72 360 360 HOH HOH . D 4 HOH A 73 361 361 HOH HOH . D 4 HOH A 74 363 363 HOH HOH . D 4 HOH A 75 369 369 HOH HOH . D 4 HOH A 76 372 372 HOH HOH . D 4 HOH A 77 375 375 HOH HOH . D 4 HOH A 78 378 378 HOH HOH . D 4 HOH A 79 380 380 HOH HOH . D 4 HOH A 80 381 381 HOH HOH . D 4 HOH A 81 382 382 HOH HOH . D 4 HOH A 82 383 383 HOH HOH . D 4 HOH A 83 384 384 HOH HOH . D 4 HOH A 84 385 385 HOH HOH . D 4 HOH A 85 390 390 HOH HOH . D 4 HOH A 86 391 391 HOH HOH . D 4 HOH A 87 392 392 HOH HOH . D 4 HOH A 88 393 393 HOH HOH . D 4 HOH A 89 395 395 HOH HOH . D 4 HOH A 90 402 402 HOH HOH . D 4 HOH A 91 403 403 HOH HOH . D 4 HOH A 92 406 406 HOH HOH . D 4 HOH A 93 410 410 HOH HOH . D 4 HOH A 94 412 412 HOH HOH . D 4 HOH A 95 421 421 HOH HOH . D 4 HOH A 96 430 430 HOH HOH . D 4 HOH A 97 432 432 HOH HOH . D 4 HOH A 98 434 434 HOH HOH . D 4 HOH A 99 452 452 HOH HOH . D 4 HOH A 100 480 480 HOH HOH . D 4 HOH A 101 504 504 HOH HOH . D 4 HOH A 102 508 508 HOH HOH . D 4 HOH A 103 537 537 HOH HOH . D 4 HOH A 104 542 542 HOH HOH . D 4 HOH A 105 547 547 HOH HOH . D 4 HOH A 106 552 552 HOH HOH . D 4 HOH A 107 559 559 HOH HOH . D 4 HOH A 108 560 560 HOH HOH . D 4 HOH A 109 567 567 HOH HOH . D 4 HOH A 110 650 650 HOH HOH . D 4 HOH A 111 664 664 HOH HOH . D 4 HOH A 112 678 678 HOH HOH . D 4 HOH A 113 683 683 HOH HOH . D 4 HOH A 114 714 714 HOH HOH . D 4 HOH A 115 746 746 HOH HOH . D 4 HOH A 116 750 750 HOH HOH . D 4 HOH A 117 773 773 HOH HOH . D 4 HOH A 118 791 791 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CR3 . . . C 3 44.14 -3.104 25.944 1 16.45 ? C1 CR3 246 A 1 HETATM 2 C C2 CR3 . . . C 3 44.519 -1.755 25.965 1 15.7 ? C2 CR3 246 A 1 HETATM 3 C C3 CR3 . . . C 3 44.478 -1.023 27.131 1 16.63 ? C3 CR3 246 A 1 HETATM 4 C C4 CR3 . . . C 3 44.062 -1.644 28.27 1 17.16 ? C4 CR3 246 A 1 HETATM 5 C C5 CR3 . . . C 3 43.694 -2.932 28.302 1 14.23 ? C5 CR3 246 A 1 HETATM 6 C C6 CR3 . . . C 3 43.719 -3.71 27.147 1 14.59 ? C6 CR3 246 A 1 HETATM 7 C C7 CR3 . . . C 3 44.187 -3.796 24.722 1 16.93 ? C7 CR3 246 A 1 HETATM 8 N N1 CR3 . . . C 3 43.763 -5.034 24.637 1 18.58 ? N1 CR3 246 A 1 HETATM 9 N N2 CR3 . . . C 3 44.652 -3.171 23.666 1 15.57 ? N2 CR3 246 A 1 HETATM 10 N N3 CR3 . . . C 3 43.931 -1.195 29.466 1 17.22 ? N3 CR3 246 A 1 HETATM 11 C CN4 CR3 . . . C 3 43.326 -3.299 29.51 1 20.42 ? CN4 CR3 246 A 1 HETATM 12 C C8 CR3 . . . C 3 43.497 -2.172 30.206 1 17.32 ? C8 CR3 246 A 1 HETATM 13 C C1' CR3 . . . C 3 43.273 -2.023 31.587 1 16.59 ? C1' CR3 246 A 1 HETATM 14 C C2' CR3 . . . C 3 42.938 -3.133 32.36 1 17.03 ? C2' CR3 246 A 1 HETATM 15 C C3' CR3 . . . C 3 42.753 -3.009 33.734 1 18.1 ? C3' CR3 246 A 1 HETATM 16 C C4' CR3 . . . C 3 42.901 -1.785 34.351 1 18.81 ? C4' CR3 246 A 1 HETATM 17 C C5' CR3 . . . C 3 43.238 -0.665 33.603 1 18.27 ? C5' CR3 246 A 1 HETATM 18 O O5' CR3 . . . C 3 43.42 0.585 34.179 1 20.86 ? O5' CR3 246 A 1 HETATM 19 C C6' CR3 . . . C 3 43.419 -0.777 32.233 1 15.25 ? C6' CR3 246 A 1 HETATM 20 O O6' CR3 . . . C 3 43.723 0.389 31.552 1 7.62 ? O6' CR3 246 A 1 HETATM 21 C C1B CR3 . . . C 3 43.282 2.334 35.796 1 25.61 ? C1B CR3 246 A 1 HETATM 22 C C2B CR3 . . . C 3 43.609 0.851 35.575 1 25.06 ? C2B CR3 246 A 1 HETATM 23 C C3B CR3 . . . C 3 45.125 0.71 35.868 1 28.02 ? C3B CR3 246 A 1 HETATM 24 C C4B CR3 . . . C 3 45.592 2.056 36.438 1 27.97 ? C4B CR3 246 A 1 HETATM 25 C C5B CR3 . . . C 3 44.329 2.84 36.772 1 27.81 ? C5B CR3 246 A 1 HETATM 26 H HC2 CR3 . . . C 3 44.857 -1.252 25.078 1 16.9 ? HC2 CR3 246 A 1 HETATM 27 H HC3 CR3 . . . C 3 44.772 0.014 27.151 1 17.51 ? HC3 CR3 246 A 1 HETATM 28 H HC6 CR3 . . . C 3 43.423 -4.748 27.178 1 14.56 ? HC6 CR3 246 A 1 HETATM 29 H HH11 CR3 . . . C 3 43.44 -5.502 25.472 1 18.84 ? HH11 CR3 246 A 1 HETATM 30 H HH12 CR3 . . . C 3 43.783 -5.592 23.81 1 18.71 ? HH12 CR3 246 A 1 HETATM 31 H HH21 CR3 . . . C 3 45.003 -2.229 23.747 1 15.54 ? HH21 CR3 246 A 1 HETATM 32 H HH22 CR3 . . . C 3 44.756 -3.613 22.78 1 17.16 ? HH22 CR3 246 A 1 HETATM 33 H HN3 CR3 . . . C 3 44.125 -0.297 29.823 1 16.37 ? HN3 CR3 246 A 1 HETATM 34 H HCN4 CR3 . . . C 3 42.992 -4.218 29.835 1 20.55 ? HCN4 CR3 246 A 1 HETATM 35 H HC2' CR3 . . . C 3 42.822 -4.099 31.893 1 17.98 ? HC2' CR3 246 A 1 HETATM 36 H HC3' CR3 . . . C 3 42.491 -3.873 34.327 1 18.03 ? HC3' CR3 246 A 1 HETATM 37 H HC4' CR3 . . . C 3 42.759 -1.72 35.417 1 19 ? HC4' CR3 246 A 1 HETATM 38 H H1A CR3 . . . C 3 43.376 2.893 34.878 1 25.52 ? H1A CR3 246 A 1 HETATM 39 H H1B CR3 . . . C 3 42.293 2.448 36.208 1 25.74 ? H1B CR3 246 A 1 HETATM 40 H H2A CR3 . . . C 3 43.012 0.203 36.193 1 23.95 ? H2A CR3 246 A 1 HETATM 41 H H3A CR3 . . . C 3 45.304 -0.072 36.595 1 27.88 ? H3A CR3 246 A 1 HETATM 42 H H3B CR3 . . . C 3 45.694 0.48 34.977 1 27.78 ? H3B CR3 246 A 1 HETATM 43 H H4A CR3 . . . C 3 46.223 2.58 35.733 1 28.22 ? H4A CR3 246 A 1 HETATM 44 H H4B CR3 . . . C 3 46.157 1.88 37.335 1 28.57 ? H4B CR3 246 A 1 HETATM 45 H H5A CR3 . . . C 3 44.509 3.895 36.664 1 27.65 ? H5A CR3 246 A 1 HETATM 46 H H5B CR3 . . . C 3 44.043 2.628 37.793 1 27.68 ? H5B CR3 246 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 46 #