data_1O2L # _model_server_result.job_id DILtELaZqCrO6FLd3b38XQ _model_server_result.datetime_utc '2024-12-27 17:29:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o2l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":246}' # _entry.id 1O2L # _exptl.entry_id 1O2L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 362.812 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3-{5-[AMINO(IMINIO)METHYL]-6-CHLORO-1H-BENZIMIDAZOL-2-YL}-1,1'-BIPHENYL-2-OLATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1O2L _cell.length_a 63.39 _cell.length_b 61.94 _cell.length_c 70.16 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O2L _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 A OE2 GLU 52 A GLU 70 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc5 B CA CA . A CA 247 1_555 D O HOH . A HOH 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc6 B CA CA . A CA 247 1_555 D O HOH . A HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? # _chem_comp.formula 'C20 H15 Cl N4 O' _chem_comp.formula_weight 362.812 _chem_comp.id 762 _chem_comp.mon_nstd_flag . _chem_comp.name "3-{5-[AMINO(IMINIO)METHYL]-6-CHLORO-1H-BENZIMIDAZOL-2-YL}-1,1'-BIPHENYL-2-OLATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CRA_10762 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 762 doub 1 n y C1 C6 762 sing 2 n y C1 C7 762 sing 3 n n C2 CL2 762 sing 4 n n C2 C3 762 sing 5 n y C3 C4 762 doub 6 n y C3 HC3 762 sing 7 n n C4 C5 762 sing 8 n y C4 N3 762 sing 9 n y C5 C6 762 doub 10 n y C5 N4 762 sing 11 n y C6 HC6 762 sing 12 n n C7 N1 762 sing 13 n n C7 N2 762 doub 14 n n N1 HH11 762 sing 15 n n N1 HH12 762 sing 16 n n N2 HH21 762 sing 17 n n N2 HH22 762 sing 18 n n N3 C8 762 sing 19 n y N3 HN3 762 sing 20 n n N4 C8 762 doub 21 n y C8 C1' 762 sing 22 n y C1' C2' 762 doub 23 n y C1' C6' 762 sing 24 n y C2' C3' 762 sing 25 n y C2' HC2' 762 sing 26 n n C3' C4' 762 doub 27 n y C3' HC3' 762 sing 28 n n C4' C5' 762 sing 29 n y C4' HC4' 762 sing 30 n n C5' C6' 762 doub 31 n y C5' C1B 762 sing 32 n y C6' O6' 762 sing 33 n n C1B C2B 762 doub 34 n y C1B C6B 762 sing 35 n y C2B C3B 762 sing 36 n y C2B H2B 762 sing 37 n n C3B C4B 762 doub 38 n y C3B H3B 762 sing 39 n n C4B C5B 762 sing 40 n y C4B H4B 762 sing 41 n n C5B C6B 762 doub 42 n y C5B H5B 762 sing 43 n n C6B H6B 762 sing 44 n n # _atom_sites.entry_id 1O2L _atom_sites.fract_transf_matrix[1][1] 0.015775 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016145 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014253 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 247 247 CA CA . C 3 762 A 1 246 246 762 BZM . D 4 HOH A 1 248 248 HOH HOH . D 4 HOH A 2 249 249 HOH HOH . D 4 HOH A 3 250 250 HOH HOH . D 4 HOH A 4 252 252 HOH HOH . D 4 HOH A 5 253 253 HOH HOH . D 4 HOH A 6 254 254 HOH HOH . D 4 HOH A 7 256 256 HOH HOH . D 4 HOH A 8 258 258 HOH HOH . D 4 HOH A 9 259 259 HOH HOH . D 4 HOH A 10 261 261 HOH HOH . D 4 HOH A 11 262 262 HOH HOH . D 4 HOH A 12 263 263 HOH HOH . D 4 HOH A 13 264 264 HOH HOH . D 4 HOH A 14 266 266 HOH HOH . D 4 HOH A 15 267 267 HOH HOH . D 4 HOH A 16 268 268 HOH HOH . D 4 HOH A 17 269 269 HOH HOH . D 4 HOH A 18 270 270 HOH HOH . D 4 HOH A 19 272 272 HOH HOH . D 4 HOH A 20 273 273 HOH HOH . D 4 HOH A 21 274 274 HOH HOH . D 4 HOH A 22 275 275 HOH HOH . D 4 HOH A 23 277 277 HOH HOH . D 4 HOH A 24 278 278 HOH HOH . D 4 HOH A 25 280 280 HOH HOH . D 4 HOH A 26 281 281 HOH HOH . D 4 HOH A 27 283 283 HOH HOH . D 4 HOH A 28 284 284 HOH HOH . D 4 HOH A 29 285 285 HOH HOH . D 4 HOH A 30 286 286 HOH HOH . D 4 HOH A 31 287 287 HOH HOH . D 4 HOH A 32 288 288 HOH HOH . D 4 HOH A 33 289 289 HOH HOH . D 4 HOH A 34 290 290 HOH HOH . D 4 HOH A 35 291 291 HOH HOH . D 4 HOH A 36 292 292 HOH HOH . D 4 HOH A 37 293 293 HOH HOH . D 4 HOH A 38 295 295 HOH HOH . D 4 HOH A 39 296 296 HOH HOH . D 4 HOH A 40 297 297 HOH HOH . D 4 HOH A 41 300 300 HOH HOH . D 4 HOH A 42 302 302 HOH HOH . D 4 HOH A 43 308 308 HOH HOH . D 4 HOH A 44 309 309 HOH HOH . D 4 HOH A 45 312 312 HOH HOH . D 4 HOH A 46 315 315 HOH HOH . D 4 HOH A 47 318 318 HOH HOH . D 4 HOH A 48 319 319 HOH HOH . D 4 HOH A 49 321 321 HOH HOH . D 4 HOH A 50 322 322 HOH HOH . D 4 HOH A 51 323 323 HOH HOH . D 4 HOH A 52 326 326 HOH HOH . D 4 HOH A 53 327 327 HOH HOH . D 4 HOH A 54 328 328 HOH HOH . D 4 HOH A 55 331 331 HOH HOH . D 4 HOH A 56 333 333 HOH HOH . D 4 HOH A 57 337 337 HOH HOH . D 4 HOH A 58 339 339 HOH HOH . D 4 HOH A 59 342 342 HOH HOH . D 4 HOH A 60 346 346 HOH HOH . D 4 HOH A 61 348 348 HOH HOH . D 4 HOH A 62 349 349 HOH HOH . D 4 HOH A 63 351 351 HOH HOH . D 4 HOH A 64 352 352 HOH HOH . D 4 HOH A 65 354 354 HOH HOH . D 4 HOH A 66 356 356 HOH HOH . D 4 HOH A 67 358 358 HOH HOH . D 4 HOH A 68 360 360 HOH HOH . D 4 HOH A 69 361 361 HOH HOH . D 4 HOH A 70 363 363 HOH HOH . D 4 HOH A 71 364 364 HOH HOH . D 4 HOH A 72 369 369 HOH HOH . D 4 HOH A 73 374 374 HOH HOH . D 4 HOH A 74 375 375 HOH HOH . D 4 HOH A 75 377 377 HOH HOH . D 4 HOH A 76 378 378 HOH HOH . D 4 HOH A 77 380 380 HOH HOH . D 4 HOH A 78 381 381 HOH HOH . D 4 HOH A 79 382 382 HOH HOH . D 4 HOH A 80 383 383 HOH HOH . D 4 HOH A 81 385 385 HOH HOH . D 4 HOH A 82 391 391 HOH HOH . D 4 HOH A 83 392 392 HOH HOH . D 4 HOH A 84 393 393 HOH HOH . D 4 HOH A 85 395 395 HOH HOH . D 4 HOH A 86 402 402 HOH HOH . D 4 HOH A 87 403 403 HOH HOH . D 4 HOH A 88 406 406 HOH HOH . D 4 HOH A 89 412 412 HOH HOH . D 4 HOH A 90 421 421 HOH HOH . D 4 HOH A 91 430 430 HOH HOH . D 4 HOH A 92 432 432 HOH HOH . D 4 HOH A 93 468 468 HOH HOH . D 4 HOH A 94 481 481 HOH HOH . D 4 HOH A 95 489 489 HOH HOH . D 4 HOH A 96 502 502 HOH HOH . D 4 HOH A 97 504 504 HOH HOH . D 4 HOH A 98 536 536 HOH HOH . D 4 HOH A 99 539 539 HOH HOH . D 4 HOH A 100 542 542 HOH HOH . D 4 HOH A 101 547 547 HOH HOH . D 4 HOH A 102 560 560 HOH HOH . D 4 HOH A 103 567 567 HOH HOH . D 4 HOH A 104 568 568 HOH HOH . D 4 HOH A 105 636 636 HOH HOH . D 4 HOH A 106 642 642 HOH HOH . D 4 HOH A 107 650 650 HOH HOH . D 4 HOH A 108 664 664 HOH HOH . D 4 HOH A 109 671 671 HOH HOH . D 4 HOH A 110 678 678 HOH HOH . D 4 HOH A 111 683 683 HOH HOH . D 4 HOH A 112 703 703 HOH HOH . D 4 HOH A 113 705 705 HOH HOH . D 4 HOH A 114 709 709 HOH HOH . D 4 HOH A 115 718 718 HOH HOH . D 4 HOH A 116 725 725 HOH HOH . D 4 HOH A 117 727 727 HOH HOH . D 4 HOH A 118 748 748 HOH HOH . D 4 HOH A 119 750 750 HOH HOH . D 4 HOH A 120 761 761 HOH HOH . D 4 HOH A 121 773 773 HOH HOH . D 4 HOH A 122 794 794 HOH HOH . D 4 HOH A 123 803 803 HOH HOH . D 4 HOH A 124 832 832 HOH HOH . D 4 HOH A 125 878 878 HOH HOH . D 4 HOH A 126 893 893 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 762 . . . C 3 44.324 -3.043 25.656 1 19.14 ? C1 762 246 A 1 HETATM 2 C C2 762 . . . C 3 44.249 -1.628 25.651 1 16.94 ? C2 762 246 A 1 HETATM 3 CL CL2 762 . . . C 3 44.119 -0.599 24.186 1 19.59 ? CL2 762 246 A 1 HETATM 4 C C3 762 . . . C 3 44.171 -0.935 26.876 1 23.61 ? C3 762 246 A 1 HETATM 5 C C4 762 . . . C 3 44.154 -1.663 28.056 1 22.32 ? C4 762 246 A 1 HETATM 6 C C5 762 . . . C 3 44.224 -2.992 28.089 1 21.24 ? C5 762 246 A 1 HETATM 7 C C6 762 . . . C 3 44.317 -3.717 26.907 1 20.32 ? C6 762 246 A 1 HETATM 8 C C7 762 . . . C 3 44.432 -3.76 24.424 1 19.73 ? C7 762 246 A 1 HETATM 9 N N1 762 . . . C 3 43.994 -4.999 24.26 1 18.59 ? N1 762 246 A 1 HETATM 10 N N2 762 . . . C 3 45.021 -3.123 23.449 1 20.35 ? N2 762 246 A 1 HETATM 11 N N3 762 . . . C 3 44.1 -1.303 29.293 1 24.87 ? N3 762 246 A 1 HETATM 12 N N4 762 . . . C 3 44.194 -3.48 29.312 1 24.64 ? N4 762 246 A 1 HETATM 13 C C8 762 . . . C 3 44.109 -2.37 30.043 1 25.84 ? C8 762 246 A 1 HETATM 14 C C1' 762 . . . C 3 43.982 -2.286 31.468 1 28.94 ? C1' 762 246 A 1 HETATM 15 C C2' 762 . . . C 3 43.625 -3.417 32.223 1 26.56 ? C2' 762 246 A 1 HETATM 16 C C3' 762 . . . C 3 43.429 -3.315 33.604 1 24.23 ? C3' 762 246 A 1 HETATM 17 C C4' 762 . . . C 3 43.587 -2.111 34.248 1 24.96 ? C4' 762 246 A 1 HETATM 18 C C5' 762 . . . C 3 43.955 -0.966 33.561 1 28.44 ? C5' 762 246 A 1 HETATM 19 C C6' 762 . . . C 3 44.147 -1.058 32.158 1 29.45 ? C6' 762 246 A 1 HETATM 20 O O6' 762 . . . C 3 44.498 0.036 31.409 1 31.67 ? O6' 762 246 A 1 HETATM 21 C C1B 762 . . . C 3 44.153 0.209 34.325 1 31.62 ? C1B 762 246 A 1 HETATM 22 C C2B 762 . . . C 3 44.927 0.12 35.499 1 35.79 ? C2B 762 246 A 1 HETATM 23 C C3B 762 . . . C 3 45.169 1.24 36.309 1 36.23 ? C3B 762 246 A 1 HETATM 24 C C4B 762 . . . C 3 44.645 2.472 35.961 1 34.95 ? C4B 762 246 A 1 HETATM 25 C C5B 762 . . . C 3 43.884 2.579 34.812 1 35.69 ? C5B 762 246 A 1 HETATM 26 C C6B 762 . . . C 3 43.635 1.46 33.996 1 34.81 ? C6B 762 246 A 1 HETATM 27 H HC3 762 . . . C 3 44.12 0.145 26.901 1 21.45 ? HC3 762 246 A 1 HETATM 28 H HC6 762 . . . C 3 44.359 -4.793 26.954 1 19.97 ? HC6 762 246 A 1 HETATM 29 H HH11 762 . . . C 3 43.595 -5.487 25.052 1 19.19 ? HH11 762 246 A 1 HETATM 30 H HH12 762 . . . C 3 44.046 -5.524 23.414 1 17.78 ? HH12 762 246 A 1 HETATM 31 H HH21 762 . . . C 3 45.334 -2.181 23.628 1 18.88 ? HH21 762 246 A 1 HETATM 32 H HH22 762 . . . C 3 45.174 -3.495 22.538 1 20.64 ? HH22 762 246 A 1 HETATM 33 H HN3 762 . . . C 3 44.04 -0.385 29.677 1 23.14 ? HN3 762 246 A 1 HETATM 34 H HC2' 762 . . . C 3 43.496 -4.371 31.74 1 25.43 ? HC2' 762 246 A 1 HETATM 35 H HC3' 762 . . . C 3 43.153 -4.178 34.184 1 24.42 ? HC3' 762 246 A 1 HETATM 36 H HC4' 762 . . . C 3 43.427 -2.067 35.314 1 26.58 ? HC4' 762 246 A 1 HETATM 37 H H2B 762 . . . C 3 45.353 -0.83 35.794 1 35.48 ? H2B 762 246 A 1 HETATM 38 H H3B 762 . . . C 3 45.762 1.149 37.213 1 36.88 ? H3B 762 246 A 1 HETATM 39 H H4B 762 . . . C 3 44.826 3.335 36.589 1 36.14 ? H4B 762 246 A 1 HETATM 40 H H5B 762 . . . C 3 43.484 3.549 34.55 1 36.47 ? H5B 762 246 A 1 HETATM 41 H H6B 762 . . . C 3 43.039 1.582 33.103 1 35.11 ? H6B 762 246 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 41 #