data_1O32
#
_model_server_result.job_id            DeyhOCUT44HfQioxBESj4w 
_model_server_result.datetime_utc      '2024-11-01 03:42:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1o32 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":246}' 
#
_entry.id    1O32 
#
_exptl.entry_id    1O32 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              253.259 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}PYRIDIN-3-OLATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1O32 
_cell.length_a            63.85 
_cell.length_b            62.01 
_cell.length_c            70.1 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1O32 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc1 A OE2 GLU 52 A GLU 70 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc5 B CA CA . A CA 247 1_555 D O HOH . A HOH 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc6 B CA CA . A CA 247 1_555 D O HOH . A HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
#
_chem_comp.formula           'C13 H11 N5 O' 
_chem_comp.formula_weight    253.259 
_chem_comp.id                801 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}PYRIDIN-3-OLATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     CRA_1801 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 801 doub 1 n y 
C1 C6 801 sing 2 n y 
C1 C7 801 sing 3 n n 
C2 C3 801 sing 4 n y 
C2 HC2 801 sing 5 n n 
C3 C4 801 doub 6 n y 
C3 HC3 801 sing 7 n n 
C4 C5 801 sing 8 n y 
C4 N3 801 sing 9 n y 
C5 C6 801 doub 10 n y 
C5 N4 801 sing 11 n y 
C6 HC6 801 sing 12 n n 
C7 N1 801 sing 13 n n 
C7 N2 801 doub 14 n n 
N1 HH11 801 sing 15 n n 
N1 HH12 801 sing 16 n n 
N2 HH21 801 sing 17 n n 
N2 HH22 801 sing 18 n n 
N3 C8 801 sing 19 n y 
N3 HN3 801 sing 20 n n 
N4 C8 801 doub 21 n y 
C8 C1' 801 sing 22 n y 
C1' N2' 801 doub 23 n y 
C1' C6' 801 sing 24 n y 
N2' C3' 801 sing 25 n y 
C3' C4' 801 doub 26 n y 
C3' HC3' 801 sing 27 n n 
C4' C5' 801 sing 28 n y 
C4' HC4' 801 sing 29 n n 
C5' C6' 801 doub 30 n y 
C5' HC5' 801 sing 31 n n 
C6' O6' 801 sing 32 n n 
#
_atom_sites.entry_id                     1O32 
_atom_sites.fract_transf_matrix[1][1]    0.015662 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016126 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014265 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 247 247 CA CA . 
C 3 801 A 1 246 246 801 BZM . 
D 4 HOH A 1 248 248 HOH HOH . 
D 4 HOH A 2 249 249 HOH HOH . 
D 4 HOH A 3 250 250 HOH HOH . 
D 4 HOH A 4 252 252 HOH HOH . 
D 4 HOH A 5 253 253 HOH HOH . 
D 4 HOH A 6 254 254 HOH HOH . 
D 4 HOH A 7 255 255 HOH HOH . 
D 4 HOH A 8 256 256 HOH HOH . 
D 4 HOH A 9 258 258 HOH HOH . 
D 4 HOH A 10 259 259 HOH HOH . 
D 4 HOH A 11 261 261 HOH HOH . 
D 4 HOH A 12 262 262 HOH HOH . 
D 4 HOH A 13 263 263 HOH HOH . 
D 4 HOH A 14 264 264 HOH HOH . 
D 4 HOH A 15 266 266 HOH HOH . 
D 4 HOH A 16 267 267 HOH HOH . 
D 4 HOH A 17 268 268 HOH HOH . 
D 4 HOH A 18 269 269 HOH HOH . 
D 4 HOH A 19 270 270 HOH HOH . 
D 4 HOH A 20 272 272 HOH HOH . 
D 4 HOH A 21 273 273 HOH HOH . 
D 4 HOH A 22 274 274 HOH HOH . 
D 4 HOH A 23 275 275 HOH HOH . 
D 4 HOH A 24 277 277 HOH HOH . 
D 4 HOH A 25 278 278 HOH HOH . 
D 4 HOH A 26 280 280 HOH HOH . 
D 4 HOH A 27 281 281 HOH HOH . 
D 4 HOH A 28 282 282 HOH HOH . 
D 4 HOH A 29 283 283 HOH HOH . 
D 4 HOH A 30 284 284 HOH HOH . 
D 4 HOH A 31 285 285 HOH HOH . 
D 4 HOH A 32 286 286 HOH HOH . 
D 4 HOH A 33 287 287 HOH HOH . 
D 4 HOH A 34 288 288 HOH HOH . 
D 4 HOH A 35 289 289 HOH HOH . 
D 4 HOH A 36 290 290 HOH HOH . 
D 4 HOH A 37 291 291 HOH HOH . 
D 4 HOH A 38 292 292 HOH HOH . 
D 4 HOH A 39 293 293 HOH HOH . 
D 4 HOH A 40 294 294 HOH HOH . 
D 4 HOH A 41 295 295 HOH HOH . 
D 4 HOH A 42 296 296 HOH HOH . 
D 4 HOH A 43 297 297 HOH HOH . 
D 4 HOH A 44 299 299 HOH HOH . 
D 4 HOH A 45 300 300 HOH HOH . 
D 4 HOH A 46 302 302 HOH HOH . 
D 4 HOH A 47 308 308 HOH HOH . 
D 4 HOH A 48 309 309 HOH HOH . 
D 4 HOH A 49 312 312 HOH HOH . 
D 4 HOH A 50 315 315 HOH HOH . 
D 4 HOH A 51 317 317 HOH HOH . 
D 4 HOH A 52 318 318 HOH HOH . 
D 4 HOH A 53 321 321 HOH HOH . 
D 4 HOH A 54 322 322 HOH HOH . 
D 4 HOH A 55 323 323 HOH HOH . 
D 4 HOH A 56 326 326 HOH HOH . 
D 4 HOH A 57 327 327 HOH HOH . 
D 4 HOH A 58 328 328 HOH HOH . 
D 4 HOH A 59 331 331 HOH HOH . 
D 4 HOH A 60 333 333 HOH HOH . 
D 4 HOH A 61 335 335 HOH HOH . 
D 4 HOH A 62 336 336 HOH HOH . 
D 4 HOH A 63 338 338 HOH HOH . 
D 4 HOH A 64 339 339 HOH HOH . 
D 4 HOH A 65 342 342 HOH HOH . 
D 4 HOH A 66 346 346 HOH HOH . 
D 4 HOH A 67 348 348 HOH HOH . 
D 4 HOH A 68 349 349 HOH HOH . 
D 4 HOH A 69 352 352 HOH HOH . 
D 4 HOH A 70 353 353 HOH HOH . 
D 4 HOH A 71 354 354 HOH HOH . 
D 4 HOH A 72 356 356 HOH HOH . 
D 4 HOH A 73 358 358 HOH HOH . 
D 4 HOH A 74 360 360 HOH HOH . 
D 4 HOH A 75 361 361 HOH HOH . 
D 4 HOH A 76 363 363 HOH HOH . 
D 4 HOH A 77 369 369 HOH HOH . 
D 4 HOH A 78 371 371 HOH HOH . 
D 4 HOH A 79 372 372 HOH HOH . 
D 4 HOH A 80 375 375 HOH HOH . 
D 4 HOH A 81 377 377 HOH HOH . 
D 4 HOH A 82 378 378 HOH HOH . 
D 4 HOH A 83 380 380 HOH HOH . 
D 4 HOH A 84 381 381 HOH HOH . 
D 4 HOH A 85 382 382 HOH HOH . 
D 4 HOH A 86 384 384 HOH HOH . 
D 4 HOH A 87 385 385 HOH HOH . 
D 4 HOH A 88 390 390 HOH HOH . 
D 4 HOH A 89 391 391 HOH HOH . 
D 4 HOH A 90 392 392 HOH HOH . 
D 4 HOH A 91 393 393 HOH HOH . 
D 4 HOH A 92 395 395 HOH HOH . 
D 4 HOH A 93 402 402 HOH HOH . 
D 4 HOH A 94 403 403 HOH HOH . 
D 4 HOH A 95 404 404 HOH HOH . 
D 4 HOH A 96 406 406 HOH HOH . 
D 4 HOH A 97 410 410 HOH HOH . 
D 4 HOH A 98 412 412 HOH HOH . 
D 4 HOH A 99 421 421 HOH HOH . 
D 4 HOH A 100 431 431 HOH HOH . 
D 4 HOH A 101 432 432 HOH HOH . 
D 4 HOH A 102 434 434 HOH HOH . 
D 4 HOH A 103 448 448 HOH HOH . 
D 4 HOH A 104 452 452 HOH HOH . 
D 4 HOH A 105 480 480 HOH HOH . 
D 4 HOH A 106 502 502 HOH HOH . 
D 4 HOH A 107 504 504 HOH HOH . 
D 4 HOH A 108 508 508 HOH HOH . 
D 4 HOH A 109 537 537 HOH HOH . 
D 4 HOH A 110 539 539 HOH HOH . 
D 4 HOH A 111 542 542 HOH HOH . 
D 4 HOH A 112 547 547 HOH HOH . 
D 4 HOH A 113 552 552 HOH HOH . 
D 4 HOH A 114 559 559 HOH HOH . 
D 4 HOH A 115 560 560 HOH HOH . 
D 4 HOH A 116 561 561 HOH HOH . 
D 4 HOH A 117 567 567 HOH HOH . 
D 4 HOH A 118 650 650 HOH HOH . 
D 4 HOH A 119 664 664 HOH HOH . 
D 4 HOH A 120 678 678 HOH HOH . 
D 4 HOH A 121 683 683 HOH HOH . 
D 4 HOH A 122 694 694 HOH HOH . 
D 4 HOH A 123 701 701 HOH HOH . 
D 4 HOH A 124 703 703 HOH HOH . 
D 4 HOH A 125 727 727 HOH HOH . 
D 4 HOH A 126 756 756 HOH HOH . 
D 4 HOH A 127 791 791 HOH HOH . 
D 4 HOH A 128 803 803 HOH HOH . 
D 4 HOH A 129 857 857 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 801 . . . C 3 44.281 -3.123 26.062 1 14.44 ? C1 801 246 A 1 
HETATM 2 C C2 801 . . . C 3 44.663 -1.791 26.349 1 15.71 ? C2 801 246 A 1 
HETATM 3 C C3 801 . . . C 3 44.553 -1.279 27.662 1 16.73 ? C3 801 246 A 1 
HETATM 4 C C4 801 . . . C 3 44.071 -2.118 28.636 1 19.16 ? C4 801 246 A 1 
HETATM 5 C C5 801 . . . C 3 43.693 -3.385 28.373 1 19.3 ? C5 801 246 A 1 
HETATM 6 C C6 801 . . . C 3 43.782 -3.916 27.104 1 18.99 ? C6 801 246 A 1 
HETATM 7 C C7 801 . . . C 3 44.391 -3.667 24.772 1 20.96 ? C7 801 246 A 1 
HETATM 8 N N1 801 . . . C 3 44.111 -4.934 24.568 1 21.6 ? N1 801 246 A 1 
HETATM 9 N N2 801 . . . C 3 44.779 -2.901 23.785 1 23.06 ? N2 801 246 A 1 
HETATM 10 N N3 801 . . . C 3 43.866 -1.953 29.887 1 19.31 ? N3 801 246 A 1 
HETATM 11 N N4 801 . . . C 3 43.257 -4.03 29.424 1 25.06 ? N4 801 246 A 1 
HETATM 12 C C8 801 . . . C 3 43.397 -3.084 30.34 1 27.15 ? C8 801 246 A 1 
HETATM 13 C C1' 801 . . . C 3 43.13 -3.232 31.712 1 34.38 ? C1' 801 246 A 1 
HETATM 14 N N2' 801 . . . C 3 43.128 -2.125 32.452 1 37.66 ? N2' 801 246 A 1 
HETATM 15 C C3' 801 . . . C 3 42.899 -2.136 33.753 1 36.53 ? C3' 801 246 A 1 
HETATM 16 C C4' 801 . . . C 3 42.643 -3.332 34.418 1 38.43 ? C4' 801 246 A 1 
HETATM 17 C C5' 801 . . . C 3 42.636 -4.516 33.692 1 40.37 ? C5' 801 246 A 1 
HETATM 18 C C6' 801 . . . C 3 42.878 -4.492 32.322 1 38.61 ? C6' 801 246 A 1 
HETATM 19 O O6' 801 . . . C 3 42.855 -5.72 31.661 1 44.36 ? O6' 801 246 A 1 
HETATM 20 H HC2 801 . . . C 3 45.05 -1.145 25.578 1 15.09 ? HC2 801 246 A 1 
HETATM 21 H HC3 801 . . . C 3 44.834 -0.266 27.91 1 15.83 ? HC3 801 246 A 1 
HETATM 22 H HC6 801 . . . C 3 43.463 -4.933 26.932 1 18.23 ? HC6 801 246 A 1 
HETATM 23 H HH11 801 . . . C 3 43.846 -5.524 25.346 1 20.79 ? HH11 801 246 A 1 
HETATM 24 H HH12 801 . . . C 3 44.155 -5.367 23.676 1 21.1 ? HH12 801 246 A 1 
HETATM 25 H HH21 801 . . . C 3 44.949 -1.928 23.973 1 22.32 ? HH21 801 246 A 1 
HETATM 26 H HH22 801 . . . C 3 44.917 -3.197 22.845 1 23.14 ? HH22 801 246 A 1 
HETATM 27 H HN3 801 . . . C 3 44.015 -1.172 30.458 1 21.09 ? HN3 801 246 A 1 
HETATM 28 H HC3' 801 . . . C 3 42.895 -1.211 34.307 1 35.29 ? HC3' 801 246 A 1 
HETATM 29 H HC4' 801 . . . C 3 42.451 -3.35 35.482 1 36.72 ? HC4' 801 246 A 1 
HETATM 30 H HC5' 801 . . . C 3 42.448 -5.459 34.189 1 38.06 ? HC5' 801 246 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           30 
#