data_1O34 # _model_server_result.job_id 8Uorp3WLDDPf5cLTh-q0Yw _model_server_result.datetime_utc '2024-11-25 13:35:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o34 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":246}' # _entry.id 1O34 # _exptl.entry_id 1O34 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 253.259 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}PYRIDIN-3-OLATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1O34 _cell.length_a 63.55 _cell.length_b 63.44 _cell.length_c 69.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O34 _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A OE2 GLU 52 A GLU 70 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc5 B CA CA . A CA 247 1_555 E O HOH . A HOH 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc6 B CA CA . A CA 247 1_555 E O HOH . A HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? # _chem_comp.formula 'C13 H11 N5 O' _chem_comp.formula_weight 253.259 _chem_comp.id 801 _chem_comp.mon_nstd_flag . _chem_comp.name 2-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}PYRIDIN-3-OLATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CRA_1801 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 801 doub 1 n y C1 C6 801 sing 2 n y C1 C7 801 sing 3 n n C2 C3 801 sing 4 n y C2 HC2 801 sing 5 n n C3 C4 801 doub 6 n y C3 HC3 801 sing 7 n n C4 C5 801 sing 8 n y C4 N3 801 sing 9 n y C5 C6 801 doub 10 n y C5 N4 801 sing 11 n y C6 HC6 801 sing 12 n n C7 N1 801 sing 13 n n C7 N2 801 doub 14 n n N1 HH11 801 sing 15 n n N1 HH12 801 sing 16 n n N2 HH21 801 sing 17 n n N2 HH22 801 sing 18 n n N3 C8 801 sing 19 n y N3 HN3 801 sing 20 n n N4 C8 801 doub 21 n y C8 C1' 801 sing 22 n y C1' N2' 801 doub 23 n y C1' C6' 801 sing 24 n y N2' C3' 801 sing 25 n y C3' C4' 801 doub 26 n y C3' HC3' 801 sing 27 n n C4' C5' 801 sing 28 n y C4' HC4' 801 sing 29 n n C5' C6' 801 doub 30 n y C5' HC5' 801 sing 31 n n C6' O6' 801 sing 32 n n # _atom_sites.entry_id 1O34 _atom_sites.fract_transf_matrix[1][1] 0.015736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015763 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 247 247 CA CA . C 3 CL A 1 260 260 CL CL . D 4 801 A 1 246 246 801 BZM . E 5 HOH A 1 248 248 HOH HOH . E 5 HOH A 2 249 249 HOH HOH . E 5 HOH A 3 250 250 HOH HOH . E 5 HOH A 4 252 252 HOH HOH . E 5 HOH A 5 253 253 HOH HOH . E 5 HOH A 6 254 254 HOH HOH . E 5 HOH A 7 255 255 HOH HOH . E 5 HOH A 8 256 256 HOH HOH . E 5 HOH A 9 258 258 HOH HOH . E 5 HOH A 10 259 259 HOH HOH . E 5 HOH A 11 261 261 HOH HOH . E 5 HOH A 12 262 262 HOH HOH . E 5 HOH A 13 263 263 HOH HOH . E 5 HOH A 14 264 264 HOH HOH . E 5 HOH A 15 266 266 HOH HOH . E 5 HOH A 16 267 267 HOH HOH . E 5 HOH A 17 268 268 HOH HOH . E 5 HOH A 18 269 269 HOH HOH . E 5 HOH A 19 270 270 HOH HOH . E 5 HOH A 20 272 272 HOH HOH . E 5 HOH A 21 273 273 HOH HOH . E 5 HOH A 22 274 274 HOH HOH . E 5 HOH A 23 275 275 HOH HOH . E 5 HOH A 24 277 277 HOH HOH . E 5 HOH A 25 278 278 HOH HOH . E 5 HOH A 26 280 280 HOH HOH . E 5 HOH A 27 281 281 HOH HOH . E 5 HOH A 28 282 282 HOH HOH . E 5 HOH A 29 283 283 HOH HOH . E 5 HOH A 30 284 284 HOH HOH . E 5 HOH A 31 285 285 HOH HOH . E 5 HOH A 32 286 286 HOH HOH . E 5 HOH A 33 287 287 HOH HOH . E 5 HOH A 34 288 288 HOH HOH . E 5 HOH A 35 289 289 HOH HOH . E 5 HOH A 36 290 290 HOH HOH . E 5 HOH A 37 291 291 HOH HOH . E 5 HOH A 38 292 292 HOH HOH . E 5 HOH A 39 293 293 HOH HOH . E 5 HOH A 40 294 294 HOH HOH . E 5 HOH A 41 295 295 HOH HOH . E 5 HOH A 42 296 296 HOH HOH . E 5 HOH A 43 297 297 HOH HOH . E 5 HOH A 44 299 299 HOH HOH . E 5 HOH A 45 300 300 HOH HOH . E 5 HOH A 46 302 302 HOH HOH . E 5 HOH A 47 308 308 HOH HOH . E 5 HOH A 48 309 309 HOH HOH . E 5 HOH A 49 312 312 HOH HOH . E 5 HOH A 50 315 315 HOH HOH . E 5 HOH A 51 317 317 HOH HOH . E 5 HOH A 52 318 318 HOH HOH . E 5 HOH A 53 321 321 HOH HOH . E 5 HOH A 54 322 322 HOH HOH . E 5 HOH A 55 323 323 HOH HOH . E 5 HOH A 56 326 326 HOH HOH . E 5 HOH A 57 327 327 HOH HOH . E 5 HOH A 58 328 328 HOH HOH . E 5 HOH A 59 331 331 HOH HOH . E 5 HOH A 60 333 333 HOH HOH . E 5 HOH A 61 335 335 HOH HOH . E 5 HOH A 62 336 336 HOH HOH . E 5 HOH A 63 338 338 HOH HOH . E 5 HOH A 64 339 339 HOH HOH . E 5 HOH A 65 342 342 HOH HOH . E 5 HOH A 66 346 346 HOH HOH . E 5 HOH A 67 348 348 HOH HOH . E 5 HOH A 68 349 349 HOH HOH . E 5 HOH A 69 352 352 HOH HOH . E 5 HOH A 70 353 353 HOH HOH . E 5 HOH A 71 354 354 HOH HOH . E 5 HOH A 72 356 356 HOH HOH . E 5 HOH A 73 358 358 HOH HOH . E 5 HOH A 74 360 360 HOH HOH . E 5 HOH A 75 361 361 HOH HOH . E 5 HOH A 76 363 363 HOH HOH . E 5 HOH A 77 369 369 HOH HOH . E 5 HOH A 78 371 371 HOH HOH . E 5 HOH A 79 372 372 HOH HOH . E 5 HOH A 80 374 374 HOH HOH . E 5 HOH A 81 375 375 HOH HOH . E 5 HOH A 82 376 376 HOH HOH . E 5 HOH A 83 377 377 HOH HOH . E 5 HOH A 84 378 378 HOH HOH . E 5 HOH A 85 380 380 HOH HOH . E 5 HOH A 86 381 381 HOH HOH . E 5 HOH A 87 382 382 HOH HOH . E 5 HOH A 88 383 383 HOH HOH . E 5 HOH A 89 384 384 HOH HOH . E 5 HOH A 90 385 385 HOH HOH . E 5 HOH A 91 389 389 HOH HOH . E 5 HOH A 92 390 390 HOH HOH . E 5 HOH A 93 391 391 HOH HOH . E 5 HOH A 94 392 392 HOH HOH . E 5 HOH A 95 393 393 HOH HOH . E 5 HOH A 96 395 395 HOH HOH . E 5 HOH A 97 397 397 HOH HOH . E 5 HOH A 98 402 402 HOH HOH . E 5 HOH A 99 403 403 HOH HOH . E 5 HOH A 100 404 404 HOH HOH . E 5 HOH A 101 410 410 HOH HOH . E 5 HOH A 102 412 412 HOH HOH . E 5 HOH A 103 421 421 HOH HOH . E 5 HOH A 104 431 431 HOH HOH . E 5 HOH A 105 432 432 HOH HOH . E 5 HOH A 106 434 434 HOH HOH . E 5 HOH A 107 448 448 HOH HOH . E 5 HOH A 108 480 480 HOH HOH . E 5 HOH A 109 489 489 HOH HOH . E 5 HOH A 110 502 502 HOH HOH . E 5 HOH A 111 504 504 HOH HOH . E 5 HOH A 112 505 505 HOH HOH . E 5 HOH A 113 508 508 HOH HOH . E 5 HOH A 114 537 537 HOH HOH . E 5 HOH A 115 542 542 HOH HOH . E 5 HOH A 116 547 547 HOH HOH . E 5 HOH A 117 552 552 HOH HOH . E 5 HOH A 118 559 559 HOH HOH . E 5 HOH A 119 560 560 HOH HOH . E 5 HOH A 120 561 561 HOH HOH . E 5 HOH A 121 567 567 HOH HOH . E 5 HOH A 122 650 650 HOH HOH . E 5 HOH A 123 664 664 HOH HOH . E 5 HOH A 124 678 678 HOH HOH . E 5 HOH A 125 683 683 HOH HOH . E 5 HOH A 126 691 691 HOH HOH . E 5 HOH A 127 694 694 HOH HOH . E 5 HOH A 128 701 701 HOH HOH . E 5 HOH A 129 703 703 HOH HOH . E 5 HOH A 130 705 705 HOH HOH . E 5 HOH A 131 727 727 HOH HOH . E 5 HOH A 132 746 746 HOH HOH . E 5 HOH A 133 750 750 HOH HOH . E 5 HOH A 134 791 791 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 801 . . . D 4 43.981 -3.023 26.216 1 23.06 ? C1 801 246 A 1 HETATM 2 C C2 801 . . . D 4 44.511 -1.714 26.264 1 24.02 ? C2 801 246 A 1 HETATM 3 C C3 801 . . . D 4 44.486 -0.962 27.413 1 24.34 ? C3 801 246 A 1 HETATM 4 C C4 801 . . . D 4 43.931 -1.53 28.524 1 27.48 ? C4 801 246 A 1 HETATM 5 C C5 801 . . . D 4 43.397 -2.774 28.52 1 28.23 ? C5 801 246 A 1 HETATM 6 C C6 801 . . . D 4 43.405 -3.56 27.367 1 24.93 ? C6 801 246 A 1 HETATM 7 C C7 801 . . . D 4 44.054 -3.769 25.035 1 20.82 ? C7 801 246 A 1 HETATM 8 N N1 801 . . . D 4 43.767 -5.059 25.053 1 19.03 ? N1 801 246 A 1 HETATM 9 N N2 801 . . . D 4 44.423 -3.135 23.935 1 20.23 ? N2 801 246 A 1 HETATM 10 N N3 801 . . . D 4 43.778 -1.092 29.722 1 30.04 ? N3 801 246 A 1 HETATM 11 N N4 801 . . . D 4 42.921 -3.112 29.7 1 30.19 ? N4 801 246 A 1 HETATM 12 C C8 801 . . . D 4 43.186 -2.021 30.393 1 30.93 ? C8 801 246 A 1 HETATM 13 C C1' 801 . . . D 4 42.983 -1.894 31.753 0.61 33.45 ? C1' 801 246 A 1 HETATM 14 N N2' 801 . . . D 4 42.69 -2.98 32.436 0.61 36.3 ? N2' 801 246 A 1 HETATM 15 C C3' 801 . . . D 4 42.489 -2.99 33.738 0.61 36.98 ? C3' 801 246 A 1 HETATM 16 C C4' 801 . . . D 4 42.57 -1.794 34.443 0.61 36.45 ? C4' 801 246 A 1 HETATM 17 C C5' 801 . . . D 4 42.878 -0.615 33.767 0.61 35.45 ? C5' 801 246 A 1 HETATM 18 C C6' 801 . . . D 4 43.101 -0.66 32.402 0.61 33.33 ? C6' 801 246 A 1 HETATM 19 O O6' 801 . . . D 4 43.418 0.485 31.702 0.27 33.2 ? O6' 801 246 A 1 HETATM 20 H HC2 801 . . . D 4 44.963 -1.268 25.394 1 24.22 ? HC2 801 246 A 1 HETATM 21 H HC3 801 . . . D 4 44.895 0.034 27.462 1 25.06 ? HC3 801 246 A 1 HETATM 22 H HC6 801 . . . D 4 42.98 -4.546 27.369 1 25.11 ? HC6 801 246 A 1 HETATM 23 H HH11 801 . . . D 4 43.524 -5.49 25.937 1 19.69 ? HH11 801 246 A 1 HETATM 24 H HH12 801 . . . D 4 43.807 -5.676 24.277 1 18.41 ? HH12 801 246 A 1 HETATM 25 H HH21 801 . . . D 4 44.621 -2.144 23.966 1 20.28 ? HH21 801 246 A 1 HETATM 26 H HH22 801 . . . D 4 44.552 -3.582 23.058 1 20.92 ? HH22 801 246 A 1 HETATM 27 H HN3 801 . . . D 4 44.026 -0.221 30.115 1 30.83 ? HN3 801 246 A 1 HETATM 28 H HC3' 801 . . . D 4 42.69 -3.901 34.28 0.61 37.14 ? HC3' 801 246 A 1 HETATM 29 H HC4' 801 . . . D 4 42.411 -1.787 35.512 0.61 37.06 ? HC4' 801 246 A 1 HETATM 30 H HC5' 801 . . . D 4 42.962 0.318 34.303 0.61 35.89 ? HC5' 801 246 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 30 #