data_1O3H # _model_server_result.job_id 6oVtOWYG_dnXYjJmviOANA _model_server_result.datetime_utc '2024-11-24 17:19:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o3h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":246}' # _entry.id 1O3H # _exptl.entry_id 1O3H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 344.206 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{5-[AMINO(IMINIO)METHYL]-1H-INDOL-2-YL}-6-BROMO-4-METHYLBENZENOLATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1O3H _cell.length_a 63.74 _cell.length_b 63.07 _cell.length_c 69.49 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O3H _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A OE2 GLU 52 A GLU 70 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc5 B CA CA . A CA 247 1_555 E O HOH . A HOH 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc6 B CA CA . A CA 247 1_555 E O HOH . A HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? # _chem_comp.formula 'C16 H14 Br N3 O' _chem_comp.formula_weight 344.206 _chem_comp.id 907 _chem_comp.mon_nstd_flag . _chem_comp.name 2-{5-[AMINO(IMINIO)METHYL]-1H-INDOL-2-YL}-6-BROMO-4-METHYLBENZENOLATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CRA_9076 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 907 doub 1 n y C1 C6 907 sing 2 n y C1 C7 907 sing 3 n n C2 C3 907 sing 4 n y C2 HC2 907 sing 5 n n C3 C4 907 doub 6 n y C3 HC3 907 sing 7 n n C4 C5 907 sing 8 n y C4 N3 907 sing 9 n y C5 C6 907 doub 10 n y C5 CN4 907 sing 11 n y C6 HC6 907 sing 12 n n C7 N1 907 sing 13 n n C7 N2 907 doub 14 n n N1 HH11 907 sing 15 n n N1 HH12 907 sing 16 n n N2 HH21 907 sing 17 n n N2 HH22 907 sing 18 n n N3 C8 907 sing 19 n y N3 HN3 907 sing 20 n n CN4 C8 907 doub 21 n y CN4 HCN4 907 sing 22 n n C8 C1' 907 sing 23 n y C1' C2' 907 doub 24 n y C1' C6' 907 sing 25 n y C2' C3' 907 sing 26 n y C2' HC2' 907 sing 27 n n C3' CV' 907 sing 28 n n C3' C4' 907 doub 29 n y CV' H32' 907 sing 30 n n CV' H33' 907 sing 31 n n CV' H34' 907 sing 32 n n C4' C5' 907 sing 33 n y C4' HC4' 907 sing 34 n n C5' C6' 907 doub 35 n y C5' BR5' 907 sing 36 n n C6' O6' 907 sing 37 n n # _atom_sites.entry_id 1O3H _atom_sites.fract_transf_matrix[1][1] 0.015689 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 247 247 CA CA . C 3 CL A 1 260 260 CL CL . D 4 907 A 1 246 246 907 IND . E 5 HOH A 1 248 248 HOH HOH . E 5 HOH A 2 249 249 HOH HOH . E 5 HOH A 3 250 250 HOH HOH . E 5 HOH A 4 251 251 HOH HOH . E 5 HOH A 5 252 252 HOH HOH . E 5 HOH A 6 253 253 HOH HOH . E 5 HOH A 7 254 254 HOH HOH . E 5 HOH A 8 255 255 HOH HOH . E 5 HOH A 9 256 256 HOH HOH . E 5 HOH A 10 258 258 HOH HOH . E 5 HOH A 11 259 259 HOH HOH . E 5 HOH A 12 261 261 HOH HOH . E 5 HOH A 13 262 262 HOH HOH . E 5 HOH A 14 263 263 HOH HOH . E 5 HOH A 15 264 264 HOH HOH . E 5 HOH A 16 266 266 HOH HOH . E 5 HOH A 17 267 267 HOH HOH . E 5 HOH A 18 268 268 HOH HOH . E 5 HOH A 19 270 270 HOH HOH . E 5 HOH A 20 272 272 HOH HOH . E 5 HOH A 21 273 273 HOH HOH . E 5 HOH A 22 274 274 HOH HOH . E 5 HOH A 23 275 275 HOH HOH . E 5 HOH A 24 277 277 HOH HOH . E 5 HOH A 25 278 278 HOH HOH . E 5 HOH A 26 280 280 HOH HOH . E 5 HOH A 27 281 281 HOH HOH . E 5 HOH A 28 282 282 HOH HOH . E 5 HOH A 29 283 283 HOH HOH . E 5 HOH A 30 284 284 HOH HOH . E 5 HOH A 31 285 285 HOH HOH . E 5 HOH A 32 286 286 HOH HOH . E 5 HOH A 33 287 287 HOH HOH . E 5 HOH A 34 288 288 HOH HOH . E 5 HOH A 35 289 289 HOH HOH . E 5 HOH A 36 290 290 HOH HOH . E 5 HOH A 37 291 291 HOH HOH . E 5 HOH A 38 292 292 HOH HOH . E 5 HOH A 39 293 293 HOH HOH . E 5 HOH A 40 294 294 HOH HOH . E 5 HOH A 41 295 295 HOH HOH . E 5 HOH A 42 296 296 HOH HOH . E 5 HOH A 43 297 297 HOH HOH . E 5 HOH A 44 299 299 HOH HOH . E 5 HOH A 45 300 300 HOH HOH . E 5 HOH A 46 302 302 HOH HOH . E 5 HOH A 47 308 308 HOH HOH . E 5 HOH A 48 309 309 HOH HOH . E 5 HOH A 49 312 312 HOH HOH . E 5 HOH A 50 315 315 HOH HOH . E 5 HOH A 51 317 317 HOH HOH . E 5 HOH A 52 318 318 HOH HOH . E 5 HOH A 53 321 321 HOH HOH . E 5 HOH A 54 322 322 HOH HOH . E 5 HOH A 55 323 323 HOH HOH . E 5 HOH A 56 326 326 HOH HOH . E 5 HOH A 57 327 327 HOH HOH . E 5 HOH A 58 328 328 HOH HOH . E 5 HOH A 59 331 331 HOH HOH . E 5 HOH A 60 333 333 HOH HOH . E 5 HOH A 61 335 335 HOH HOH . E 5 HOH A 62 336 336 HOH HOH . E 5 HOH A 63 338 338 HOH HOH . E 5 HOH A 64 339 339 HOH HOH . E 5 HOH A 65 342 342 HOH HOH . E 5 HOH A 66 346 346 HOH HOH . E 5 HOH A 67 348 348 HOH HOH . E 5 HOH A 68 349 349 HOH HOH . E 5 HOH A 69 352 352 HOH HOH . E 5 HOH A 70 353 353 HOH HOH . E 5 HOH A 71 354 354 HOH HOH . E 5 HOH A 72 356 356 HOH HOH . E 5 HOH A 73 358 358 HOH HOH . E 5 HOH A 74 360 360 HOH HOH . E 5 HOH A 75 361 361 HOH HOH . E 5 HOH A 76 363 363 HOH HOH . E 5 HOH A 77 364 364 HOH HOH . E 5 HOH A 78 369 369 HOH HOH . E 5 HOH A 79 372 372 HOH HOH . E 5 HOH A 80 374 374 HOH HOH . E 5 HOH A 81 375 375 HOH HOH . E 5 HOH A 82 376 376 HOH HOH . E 5 HOH A 83 377 377 HOH HOH . E 5 HOH A 84 378 378 HOH HOH . E 5 HOH A 85 380 380 HOH HOH . E 5 HOH A 86 381 381 HOH HOH . E 5 HOH A 87 382 382 HOH HOH . E 5 HOH A 88 383 383 HOH HOH . E 5 HOH A 89 384 384 HOH HOH . E 5 HOH A 90 385 385 HOH HOH . E 5 HOH A 91 389 389 HOH HOH . E 5 HOH A 92 390 390 HOH HOH . E 5 HOH A 93 391 391 HOH HOH . E 5 HOH A 94 392 392 HOH HOH . E 5 HOH A 95 393 393 HOH HOH . E 5 HOH A 96 395 395 HOH HOH . E 5 HOH A 97 397 397 HOH HOH . E 5 HOH A 98 402 402 HOH HOH . E 5 HOH A 99 403 403 HOH HOH . E 5 HOH A 100 404 404 HOH HOH . E 5 HOH A 101 406 406 HOH HOH . E 5 HOH A 102 410 410 HOH HOH . E 5 HOH A 103 412 412 HOH HOH . E 5 HOH A 104 416 416 HOH HOH . E 5 HOH A 105 421 421 HOH HOH . E 5 HOH A 106 430 430 HOH HOH . E 5 HOH A 107 431 431 HOH HOH . E 5 HOH A 108 432 432 HOH HOH . E 5 HOH A 109 434 434 HOH HOH . E 5 HOH A 110 439 439 HOH HOH . E 5 HOH A 111 448 448 HOH HOH . E 5 HOH A 112 450 450 HOH HOH . E 5 HOH A 113 452 452 HOH HOH . E 5 HOH A 114 480 480 HOH HOH . E 5 HOH A 115 489 489 HOH HOH . E 5 HOH A 116 497 497 HOH HOH . E 5 HOH A 117 502 502 HOH HOH . E 5 HOH A 118 504 504 HOH HOH . E 5 HOH A 119 505 505 HOH HOH . E 5 HOH A 120 508 508 HOH HOH . E 5 HOH A 121 537 537 HOH HOH . E 5 HOH A 122 539 539 HOH HOH . E 5 HOH A 123 542 542 HOH HOH . E 5 HOH A 124 547 547 HOH HOH . E 5 HOH A 125 552 552 HOH HOH . E 5 HOH A 126 560 560 HOH HOH . E 5 HOH A 127 567 567 HOH HOH . E 5 HOH A 128 588 588 HOH HOH . E 5 HOH A 129 636 636 HOH HOH . E 5 HOH A 130 642 642 HOH HOH . E 5 HOH A 131 650 650 HOH HOH . E 5 HOH A 132 664 664 HOH HOH . E 5 HOH A 133 678 678 HOH HOH . E 5 HOH A 134 683 683 HOH HOH . E 5 HOH A 135 703 703 HOH HOH . E 5 HOH A 136 706 706 HOH HOH . E 5 HOH A 137 709 709 HOH HOH . E 5 HOH A 138 714 714 HOH HOH . E 5 HOH A 139 716 716 HOH HOH . E 5 HOH A 140 727 727 HOH HOH . E 5 HOH A 141 746 746 HOH HOH . E 5 HOH A 142 750 750 HOH HOH . E 5 HOH A 143 773 773 HOH HOH . E 5 HOH A 144 857 857 HOH HOH . E 5 HOH A 145 866 866 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 907 . . . D 4 43.992 -3.085 26.023 1 19.5 ? C1 907 246 A 1 HETATM 2 C C2 907 . . . D 4 44.304 -1.706 26.113 1 20.51 ? C2 907 246 A 1 HETATM 3 C C3 907 . . . D 4 44.181 -1.001 27.312 1 21.59 ? C3 907 246 A 1 HETATM 4 C C4 907 . . . D 4 43.753 -1.678 28.42 1 21.17 ? C4 907 246 A 1 HETATM 5 C C5 907 . . . D 4 43.441 -2.998 28.375 1 23.47 ? C5 907 246 A 1 HETATM 6 C C6 907 . . . D 4 43.54 -3.75 27.192 1 20.61 ? C6 907 246 A 1 HETATM 7 C C7 907 . . . D 4 44.155 -3.753 24.784 1 20.08 ? C7 907 246 A 1 HETATM 8 N N1 907 . . . D 4 43.853 -5.028 24.67 1 19.87 ? N1 907 246 A 1 HETATM 9 N N2 907 . . . D 4 44.618 -3.067 23.756 1 19.51 ? N2 907 246 A 1 HETATM 10 N N3 907 . . . D 4 43.58 -1.237 29.63 1 22.38 ? N3 907 246 A 1 HETATM 11 C CN4 907 . . . D 4 43.055 -3.359 29.659 1 25.6 ? CN4 907 246 A 1 HETATM 12 C C8 907 . . . D 4 43.17 -2.195 30.423 1 25.57 ? C8 907 246 A 1 HETATM 13 C C1' 907 . . . D 4 42.944 -2.018 31.801 1 29.43 ? C1' 907 246 A 1 HETATM 14 C C2' 907 . . . D 4 42.594 -3.1 32.61 1 31.59 ? C2' 907 246 A 1 HETATM 15 C C3' 907 . . . D 4 42.375 -2.929 33.979 1 32.27 ? C3' 907 246 A 1 HETATM 16 C CV' 907 . . . D 4 41.991 -4.127 34.849 1 31.24 ? CV' 907 246 A 1 HETATM 17 C C4' 907 . . . D 4 42.507 -1.677 34.553 1 33.18 ? C4' 907 246 A 1 HETATM 18 C C5' 907 . . . D 4 42.854 -0.602 33.763 1 33.07 ? C5' 907 246 A 1 HETATM 19 C C6' 907 . . . D 4 43.076 -0.745 32.395 1 29.43 ? C6' 907 246 A 1 HETATM 20 O O6' 907 . . . D 4 43.398 0.372 31.639 1 27.2 ? O6' 907 246 A 1 HETATM 21 BR BR5' 907 . . . D 4 43.089 1.108 34.637 1 41.81 ? BR5' 907 246 A 1 HETATM 22 H HC2 907 . . . D 4 44.649 -1.164 25.254 1 20.55 ? HC2 907 246 A 1 HETATM 23 H HC3 907 . . . D 4 44.419 0.05 27.372 1 21.29 ? HC3 907 246 A 1 HETATM 24 H HC6 907 . . . D 4 43.28 -4.798 27.186 1 20.4 ? HC6 907 246 A 1 HETATM 25 H HH11 907 . . . D 4 43.534 -5.523 25.492 1 20.71 ? HH11 907 246 A 1 HETATM 26 H HH12 907 . . . D 4 43.922 -5.575 23.843 1 19.04 ? HH12 907 246 A 1 HETATM 27 H HH21 907 . . . D 4 44.835 -2.087 23.855 1 19.42 ? HH21 907 246 A 1 HETATM 28 H HH22 907 . . . D 4 44.796 -3.469 22.864 1 20.32 ? HH22 907 246 A 1 HETATM 29 H HN3 907 . . . D 4 43.731 -0.321 29.954 1 22.54 ? HN3 907 246 A 1 HETATM 30 H HCN4 907 . . . D 4 42.739 -4.348 29.999 1 24.85 ? HCN4 907 246 A 1 HETATM 31 H HC2' 907 . . . D 4 42.491 -4.086 32.184 1 30.82 ? HC2' 907 246 A 1 HETATM 32 H H32' 907 . . . D 4 41.128 -3.876 35.446 1 31.38 ? H32' 907 246 A 1 HETATM 33 H H33' 907 . . . D 4 41.765 -4.971 34.216 1 31.32 ? H33' 907 246 A 1 HETATM 34 H H34' 907 . . . D 4 42.82 -4.373 35.496 1 31.54 ? H34' 907 246 A 1 HETATM 35 H HC4' 907 . . . D 4 42.338 -1.534 35.611 1 32.9 ? HC4' 907 246 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #