data_1O3Q # _model_server_result.job_id NgQnH_2YuaOm9wP1PF5-hA _model_server_result.datetime_utc '2025-04-03 16:43:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 1O3Q # _exptl.entry_id 1O3Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1O3Q _cell.length_a 77.15 _cell.length_b 77.15 _cell.length_c 143.2 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O3Q _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 95.466667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 DA 1 B DA -2 1_555 B N3 DT 15 C DT -2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 DA 1 B DA -2 1_555 B O4 DT 15 C DT -2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N1 DA 2 B DA -1 1_555 B N3 DT 14 C DT -1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N6 DA 2 B DA -1 1_555 B O4 DT 14 C DT -1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog5 A N1 DA 2 B DA -1 1_555 B N3 DT 15 C DT -2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DA 3 B DA 1 1_555 B N3 DT 13 C DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N6 DA 3 B DA 1 1_555 B O4 DT 13 C DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog8 A N6 DA 4 B DA 2 1_555 B O4 DT 11 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 4 B DA 2 1_555 B N3 DT 12 C DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 4 B DA 2 1_555 B O4 DT 12 C DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DA 5 B DA 3 1_555 B N3 DT 11 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 DA 5 B DA 3 1_555 B O4 DT 11 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DT 6 B DT 4 1_555 B N1 DA 10 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O4 DT 6 B DT 4 1_555 B N6 DA 10 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DG 7 B DG 5 1_555 B N3 DC 9 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N2 DG 7 B DG 5 1_555 B O2 DC 9 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O6 DG 7 B DG 5 1_555 B N4 DC 9 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DT 8 B DT 6 1_555 B N1 DA 8 C DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O4 DT 8 B DT 6 1_555 B N6 DA 8 C DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DG 9 B DG 7 1_555 B N3 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N2 DG 9 B DG 7 1_555 B O2 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O6 DG 9 B DG 7 1_555 B N4 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 DA 10 B DA 8 1_555 B N3 DT 6 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N6 DA 10 B DA 8 1_555 B O4 DT 6 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 DT 11 B DT 9 1_555 B N1 DA 5 C DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O4 DT 11 B DT 9 1_555 B N6 DA 5 C DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N3 DC 1 C DC 13 1_555 B N1 DG 4 C DG 10 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N4 DC 1 C DC 13 1_555 B O6 DG 4 C DG 10 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B O2 DC 1 C DC 13 1_555 B N2 DG 4 C DG 10 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B N3 DT 2 C DT 12 1_555 B N1 DA 3 C DA 11 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B O4 DT 2 C DT 12 1_555 B N6 DA 3 C DA 11 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 B N1 DA 3 C DA 11 1_555 B N3 DT 2 C DT 12 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 B N6 DA 3 C DA 11 1_555 B O4 DT 2 C DT 12 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 B N1 DG 4 C DG 10 1_555 B N3 DC 1 C DC 13 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 B N2 DG 4 C DG 10 1_555 B O2 DC 1 C DC 13 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 B O6 DG 4 C DG 10 1_555 B N4 DC 1 C DC 13 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 1O3Q _atom_sites.fract_transf_matrix[1][1] 0.012962 _atom_sites.fract_transf_matrix[1][2] 0.007483 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006983 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CMP A 1 1 1 CMP CMP . E 4 CMP A 1 2 2 CMP CMP . F 5 HOH B 1 106 106 HOH HOH . F 5 HOH B 2 133 133 HOH HOH . F 5 HOH B 3 136 136 HOH HOH . F 5 HOH B 4 138 138 HOH HOH . G 5 HOH C 1 109 109 HOH HOH . G 5 HOH C 2 110 110 HOH HOH . G 5 HOH C 3 114 114 HOH HOH . G 5 HOH C 4 126 126 HOH HOH . G 5 HOH C 5 128 128 HOH HOH . H 5 HOH A 1 208 100 HOH HOH . H 5 HOH A 2 209 101 HOH HOH . H 5 HOH A 3 210 102 HOH HOH . H 5 HOH A 4 211 103 HOH HOH . H 5 HOH A 5 212 104 HOH HOH . H 5 HOH A 6 213 105 HOH HOH . H 5 HOH A 7 214 107 HOH HOH . H 5 HOH A 8 215 108 HOH HOH . H 5 HOH A 9 216 111 HOH HOH . H 5 HOH A 10 217 112 HOH HOH . H 5 HOH A 11 218 113 HOH HOH . H 5 HOH A 12 219 115 HOH HOH . H 5 HOH A 13 220 116 HOH HOH . H 5 HOH A 14 221 117 HOH HOH . H 5 HOH A 15 222 118 HOH HOH . H 5 HOH A 16 223 119 HOH HOH . H 5 HOH A 17 224 120 HOH HOH . H 5 HOH A 18 225 121 HOH HOH . H 5 HOH A 19 226 122 HOH HOH . H 5 HOH A 20 227 123 HOH HOH . H 5 HOH A 21 228 124 HOH HOH . H 5 HOH A 22 229 125 HOH HOH . H 5 HOH A 23 230 127 HOH HOH . H 5 HOH A 24 231 129 HOH HOH . H 5 HOH A 25 232 130 HOH HOH . H 5 HOH A 26 233 131 HOH HOH . H 5 HOH A 27 234 132 HOH HOH . H 5 HOH A 28 235 134 HOH HOH . H 5 HOH A 29 236 135 HOH HOH . H 5 HOH A 30 237 137 HOH HOH . H 5 HOH A 31 238 139 HOH HOH . H 5 HOH A 32 239 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . D 4 27.221 8.838 40.588 1 50.55 ? P CMP 1 A 1 HETATM 2 O O1P CMP . . . D 4 27.649 9.141 41.956 1 49.71 ? O1P CMP 1 A 1 HETATM 3 O O2P CMP . . . D 4 26.012 9.468 40.055 1 53.16 ? O2P CMP 1 A 1 HETATM 4 O O5' CMP . . . D 4 28.424 9.175 39.591 1 52.81 ? O5' CMP 1 A 1 HETATM 5 C C5' CMP . . . D 4 29.463 8.233 39.32 1 51.83 ? C5' CMP 1 A 1 HETATM 6 C C4' CMP . . . D 4 28.839 6.91 39.068 1 52.43 ? C4' CMP 1 A 1 HETATM 7 O O4' CMP . . . D 4 29.791 5.855 38.801 1 54.41 ? O4' CMP 1 A 1 HETATM 8 C C3' CMP . . . D 4 28.152 6.433 40.312 1 49.46 ? C3' CMP 1 A 1 HETATM 9 O O3' CMP . . . D 4 27.018 7.25 40.473 1 53.88 ? O3' CMP 1 A 1 HETATM 10 C C2' CMP . . . D 4 27.93 4.979 39.956 1 45.99 ? C2' CMP 1 A 1 HETATM 11 O O2' CMP . . . D 4 26.922 4.815 38.981 1 61.13 ? O2' CMP 1 A 1 HETATM 12 C C1' CMP . . . D 4 29.3 4.64 39.356 1 51.63 ? C1' CMP 1 A 1 HETATM 13 N N9 CMP . . . D 4 30.24 4.222 40.394 1 45.49 ? N9 CMP 1 A 1 HETATM 14 C C8 CMP . . . D 4 30.866 5.046 41.287 1 45 ? C8 CMP 1 A 1 HETATM 15 N N7 CMP . . . D 4 31.653 4.423 42.119 1 47.8 ? N7 CMP 1 A 1 HETATM 16 C C5 CMP . . . D 4 31.546 3.094 41.745 1 46.65 ? C5 CMP 1 A 1 HETATM 17 C C6 CMP . . . D 4 32.169 1.929 42.222 1 46.16 ? C6 CMP 1 A 1 HETATM 18 N N6 CMP . . . D 4 33.071 1.926 43.203 1 38.46 ? N6 CMP 1 A 1 HETATM 19 N N1 CMP . . . D 4 31.841 0.759 41.633 1 46.56 ? N1 CMP 1 A 1 HETATM 20 C C2 CMP . . . D 4 30.965 0.778 40.622 1 45.42 ? C2 CMP 1 A 1 HETATM 21 N N3 CMP . . . D 4 30.331 1.81 40.074 1 43.52 ? N3 CMP 1 A 1 HETATM 22 C C4 CMP . . . D 4 30.67 2.954 40.688 1 44.76 ? C4 CMP 1 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #