data_1O3R # _model_server_result.job_id vd1k6SbX5gcbuV63hWrc-w _model_server_result.datetime_utc '2024-11-21 23:56:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o3r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 1O3R # _exptl.entry_id 1O3R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1O3R _cell.length_a 76.9 _cell.length_b 76.9 _cell.length_c 143.64 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O3R _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 95.76 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 DA 1 B DA -2 1_555 B N3 DT 15 C DT -2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 DA 1 B DA -2 1_555 B O4 DT 15 C DT -2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N1 DA 2 B DA -1 1_555 B N3 DT 14 C DT -1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N6 DA 2 B DA -1 1_555 B O4 DT 14 C DT -1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N1 DA 3 B DA 1 1_555 B N3 DT 13 C DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N6 DA 3 B DA 1 1_555 B O4 DT 13 C DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DA 4 B DA 2 1_555 B N3 DT 12 C DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 DA 4 B DA 2 1_555 B O4 DT 12 C DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 5 B DA 3 1_555 B N3 DT 11 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 5 B DA 3 1_555 B O4 DT 11 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DT 6 B DT 4 1_555 B N1 DA 10 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 DT 6 B DT 4 1_555 B N6 DA 10 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DG 7 B DG 5 1_555 B N3 DC 9 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 DG 7 B DG 5 1_555 B O2 DC 9 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 DG 7 B DG 5 1_555 B N4 DC 9 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DC 8 B DC 6 1_555 B N1 DG 8 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 DC 8 B DC 6 1_555 B O6 DG 8 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 DC 8 B DC 6 1_555 B N2 DG 8 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DG 9 B DG 7 1_555 B N3 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N2 DG 9 B DG 7 1_555 B O2 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O6 DG 9 B DG 7 1_555 B N4 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DA 10 B DA 8 1_555 B N3 DT 6 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N6 DA 10 B DA 8 1_555 B O4 DT 6 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N3 DT 11 B DT 9 1_555 B N1 DA 5 C DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O4 DT 11 B DT 9 1_555 B N6 DA 5 C DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 1O3R _atom_sites.fract_transf_matrix[1][1] 0.013004 _atom_sites.fract_transf_matrix[1][2] 0.007508 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CMP A 1 1 1 CMP CMP . E 4 CMP A 1 2 2 CMP CMP . F 5 HOH B 1 115 115 HOH HOH . F 5 HOH B 2 126 126 HOH HOH . F 5 HOH B 3 130 130 HOH HOH . F 5 HOH B 4 133 133 HOH HOH . F 5 HOH B 5 151 151 HOH HOH . G 5 HOH C 1 118 118 HOH HOH . G 5 HOH C 2 122 122 HOH HOH . G 5 HOH C 3 135 135 HOH HOH . G 5 HOH C 4 136 136 HOH HOH . G 5 HOH C 5 141 141 HOH HOH . G 5 HOH C 6 145 145 HOH HOH . G 5 HOH C 7 153 153 HOH HOH . H 5 HOH A 1 208 100 HOH HOH . H 5 HOH A 2 209 101 HOH HOH . H 5 HOH A 3 210 102 HOH HOH . H 5 HOH A 4 211 103 HOH HOH . H 5 HOH A 5 212 104 HOH HOH . H 5 HOH A 6 213 105 HOH HOH . H 5 HOH A 7 214 106 HOH HOH . H 5 HOH A 8 215 107 HOH HOH . H 5 HOH A 9 216 108 HOH HOH . H 5 HOH A 10 217 109 HOH HOH . H 5 HOH A 11 218 110 HOH HOH . H 5 HOH A 12 219 111 HOH HOH . H 5 HOH A 13 220 112 HOH HOH . H 5 HOH A 14 221 113 HOH HOH . H 5 HOH A 15 222 114 HOH HOH . H 5 HOH A 16 223 116 HOH HOH . H 5 HOH A 17 224 117 HOH HOH . H 5 HOH A 18 225 119 HOH HOH . H 5 HOH A 19 226 120 HOH HOH . H 5 HOH A 20 227 121 HOH HOH . H 5 HOH A 21 228 123 HOH HOH . H 5 HOH A 22 229 124 HOH HOH . H 5 HOH A 23 230 125 HOH HOH . H 5 HOH A 24 231 127 HOH HOH . H 5 HOH A 25 232 128 HOH HOH . H 5 HOH A 26 233 129 HOH HOH . H 5 HOH A 27 234 131 HOH HOH . H 5 HOH A 28 235 132 HOH HOH . H 5 HOH A 29 236 134 HOH HOH . H 5 HOH A 30 237 137 HOH HOH . H 5 HOH A 31 238 138 HOH HOH . H 5 HOH A 32 239 139 HOH HOH . H 5 HOH A 33 240 140 HOH HOH . H 5 HOH A 34 241 142 HOH HOH . H 5 HOH A 35 242 143 HOH HOH . H 5 HOH A 36 243 144 HOH HOH . H 5 HOH A 37 244 146 HOH HOH . H 5 HOH A 38 245 147 HOH HOH . H 5 HOH A 39 246 148 HOH HOH . H 5 HOH A 40 247 149 HOH HOH . H 5 HOH A 41 248 150 HOH HOH . H 5 HOH A 42 249 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . D 4 27.273 8.724 40.619 1 43.51 ? P CMP 1 A 1 HETATM 2 O O1P CMP . . . D 4 27.884 9.172 41.903 1 39.22 ? O1P CMP 1 A 1 HETATM 3 O O2P CMP . . . D 4 25.974 9.28 40.215 1 39.86 ? O2P CMP 1 A 1 HETATM 4 O O5' CMP . . . D 4 28.31 8.963 39.418 1 40.97 ? O5' CMP 1 A 1 HETATM 5 C C5' CMP . . . D 4 29.357 8.024 39.112 1 43.75 ? C5' CMP 1 A 1 HETATM 6 C C4' CMP . . . D 4 28.778 6.647 39.081 1 48.91 ? C4' CMP 1 A 1 HETATM 7 O O4' CMP . . . D 4 29.761 5.595 38.891 1 47.41 ? O4' CMP 1 A 1 HETATM 8 C C3' CMP . . . D 4 28.197 6.287 40.423 1 47.9 ? C3' CMP 1 A 1 HETATM 9 O O3' CMP . . . D 4 27.071 7.123 40.647 1 49.22 ? O3' CMP 1 A 1 HETATM 10 C C2' CMP . . . D 4 27.979 4.798 40.227 1 38.72 ? C2' CMP 1 A 1 HETATM 11 O O2' CMP . . . D 4 26.915 4.509 39.346 1 58.02 ? O2' CMP 1 A 1 HETATM 12 C C1' CMP . . . D 4 29.311 4.422 39.567 1 46.94 ? C1' CMP 1 A 1 HETATM 13 N N9 CMP . . . D 4 30.301 4.049 40.58 1 44.82 ? N9 CMP 1 A 1 HETATM 14 C C8 CMP . . . D 4 30.923 4.872 41.489 1 43.06 ? C8 CMP 1 A 1 HETATM 15 N N7 CMP . . . D 4 31.728 4.244 42.305 1 41.19 ? N7 CMP 1 A 1 HETATM 16 C C5 CMP . . . D 4 31.644 2.918 41.903 1 40.98 ? C5 CMP 1 A 1 HETATM 17 C C6 CMP . . . D 4 32.286 1.747 42.358 1 40.51 ? C6 CMP 1 A 1 HETATM 18 N N6 CMP . . . D 4 33.175 1.733 43.348 1 40.56 ? N6 CMP 1 A 1 HETATM 19 N N1 CMP . . . D 4 31.99 0.585 41.736 1 37.59 ? N1 CMP 1 A 1 HETATM 20 C C2 CMP . . . D 4 31.121 0.61 40.713 1 40.84 ? C2 CMP 1 A 1 HETATM 21 N N3 CMP . . . D 4 30.462 1.645 40.185 1 40.29 ? N3 CMP 1 A 1 HETATM 22 C C4 CMP . . . D 4 30.772 2.784 40.836 1 42.16 ? C4 CMP 1 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #