data_1O3R
#
_model_server_result.job_id            p1d2x2CO5PvhNKdCQ954Bg 
_model_server_result.datetime_utc      '2024-11-22 00:25:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1o3r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":2}' 
#
_entry.id    1O3R 
#
_exptl.entry_id    1O3R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              329.206 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1O3R 
_cell.length_a            76.9 
_cell.length_b            76.9 
_cell.length_c            143.64 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1O3R 
_symmetry.cell_setting             trigonal 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 95.76 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 A N1 DA 1 B DA -2 1_555 B N3 DT 15 C DT -2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N6 DA 1 B DA -2 1_555 B O4 DT 15 C DT -2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A N1 DA 2 B DA -1 1_555 B N3 DT 14 C DT -1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N6 DA 2 B DA -1 1_555 B O4 DT 14 C DT -1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N1 DA 3 B DA 1 1_555 B N3 DT 13 C DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N6 DA 3 B DA 1 1_555 B O4 DT 13 C DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N1 DA 4 B DA 2 1_555 B N3 DT 12 C DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N6 DA 4 B DA 2 1_555 B O4 DT 12 C DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N1 DA 5 B DA 3 1_555 B N3 DT 11 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N6 DA 5 B DA 3 1_555 B O4 DT 11 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N3 DT 6 B DT 4 1_555 B N1 DA 10 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A O4 DT 6 B DT 4 1_555 B N6 DA 10 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N1 DG 7 B DG 5 1_555 B N3 DC 9 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N2 DG 7 B DG 5 1_555 B O2 DC 9 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A O6 DG 7 B DG 5 1_555 B N4 DC 9 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N3 DC 8 B DC 6 1_555 B N1 DG 8 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N4 DC 8 B DC 6 1_555 B O6 DG 8 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A O2 DC 8 B DC 6 1_555 B N2 DG 8 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A N1 DG 9 B DG 7 1_555 B N3 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A N2 DG 9 B DG 7 1_555 B O2 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 A O6 DG 9 B DG 7 1_555 B N4 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 A N1 DA 10 B DA 8 1_555 B N3 DT 6 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 A N6 DA 10 B DA 8 1_555 B O4 DT 6 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 A N3 DT 11 B DT 9 1_555 B N1 DA 5 C DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 A O4 DT 11 B DT 9 1_555 B N6 DA 5 C DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C10 H12 N5 O6 P' 
_chem_comp.formula_weight    329.206 
_chem_comp.id                CMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'CYCLIC AMP;CAMP' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P CMP doub 70 n n 
P O2P CMP sing 71 n n 
P O5' CMP sing 72 n n 
P O3' CMP sing 73 n n 
O2P HOP2 CMP sing 74 n n 
O5' C5' CMP sing 75 n n 
C5' C4' CMP sing 76 n n 
C5' "H5'1" CMP sing 77 n n 
C5' "H5'2" CMP sing 78 n n 
C4' O4' CMP sing 79 n n 
C4' C3' CMP sing 80 n n 
C4' H4' CMP sing 81 n n 
O4' C1' CMP sing 82 n n 
C3' O3' CMP sing 83 n n 
C3' C2' CMP sing 84 n n 
C3' H3' CMP sing 85 n n 
C2' O2' CMP sing 86 n n 
C2' C1' CMP sing 87 n n 
C2' H2' CMP sing 88 n n 
O2' HO2' CMP sing 89 n n 
C1' N9 CMP sing 90 n n 
C1' H1' CMP sing 91 n n 
N9 C8 CMP sing 92 n y 
N9 C4 CMP sing 93 n y 
C8 N7 CMP doub 94 n y 
C8 H8 CMP sing 95 n n 
N7 C5 CMP sing 96 n y 
C5 C6 CMP sing 97 n y 
C5 C4 CMP doub 98 n y 
C6 N6 CMP sing 99 n n 
C6 N1 CMP doub 100 n y 
N6 HN61 CMP sing 101 n n 
N6 HN62 CMP sing 102 n n 
N1 C2 CMP sing 103 n y 
C2 N3 CMP doub 104 n y 
C2 H2 CMP sing 105 n n 
N3 C4 CMP sing 106 n y 
#
_atom_sites.entry_id                     1O3R 
_atom_sites.fract_transf_matrix[1][1]    0.013004 
_atom_sites.fract_transf_matrix[1][2]    0.007508 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015016 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006962 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 CMP A 1 1 1 CMP CMP . 
E 4 CMP A 1 2 2 CMP CMP . 
F 5 HOH B 1 115 115 HOH HOH . 
F 5 HOH B 2 126 126 HOH HOH . 
F 5 HOH B 3 130 130 HOH HOH . 
F 5 HOH B 4 133 133 HOH HOH . 
F 5 HOH B 5 151 151 HOH HOH . 
G 5 HOH C 1 118 118 HOH HOH . 
G 5 HOH C 2 122 122 HOH HOH . 
G 5 HOH C 3 135 135 HOH HOH . 
G 5 HOH C 4 136 136 HOH HOH . 
G 5 HOH C 5 141 141 HOH HOH . 
G 5 HOH C 6 145 145 HOH HOH . 
G 5 HOH C 7 153 153 HOH HOH . 
H 5 HOH A 1 208 100 HOH HOH . 
H 5 HOH A 2 209 101 HOH HOH . 
H 5 HOH A 3 210 102 HOH HOH . 
H 5 HOH A 4 211 103 HOH HOH . 
H 5 HOH A 5 212 104 HOH HOH . 
H 5 HOH A 6 213 105 HOH HOH . 
H 5 HOH A 7 214 106 HOH HOH . 
H 5 HOH A 8 215 107 HOH HOH . 
H 5 HOH A 9 216 108 HOH HOH . 
H 5 HOH A 10 217 109 HOH HOH . 
H 5 HOH A 11 218 110 HOH HOH . 
H 5 HOH A 12 219 111 HOH HOH . 
H 5 HOH A 13 220 112 HOH HOH . 
H 5 HOH A 14 221 113 HOH HOH . 
H 5 HOH A 15 222 114 HOH HOH . 
H 5 HOH A 16 223 116 HOH HOH . 
H 5 HOH A 17 224 117 HOH HOH . 
H 5 HOH A 18 225 119 HOH HOH . 
H 5 HOH A 19 226 120 HOH HOH . 
H 5 HOH A 20 227 121 HOH HOH . 
H 5 HOH A 21 228 123 HOH HOH . 
H 5 HOH A 22 229 124 HOH HOH . 
H 5 HOH A 23 230 125 HOH HOH . 
H 5 HOH A 24 231 127 HOH HOH . 
H 5 HOH A 25 232 128 HOH HOH . 
H 5 HOH A 26 233 129 HOH HOH . 
H 5 HOH A 27 234 131 HOH HOH . 
H 5 HOH A 28 235 132 HOH HOH . 
H 5 HOH A 29 236 134 HOH HOH . 
H 5 HOH A 30 237 137 HOH HOH . 
H 5 HOH A 31 238 138 HOH HOH . 
H 5 HOH A 32 239 139 HOH HOH . 
H 5 HOH A 33 240 140 HOH HOH . 
H 5 HOH A 34 241 142 HOH HOH . 
H 5 HOH A 35 242 143 HOH HOH . 
H 5 HOH A 36 243 144 HOH HOH . 
H 5 HOH A 37 244 146 HOH HOH . 
H 5 HOH A 38 245 147 HOH HOH . 
H 5 HOH A 39 246 148 HOH HOH . 
H 5 HOH A 40 247 149 HOH HOH . 
H 5 HOH A 41 248 150 HOH HOH . 
H 5 HOH A 42 249 152 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P CMP . . . E 4 50.648 4.948 33.743 1 85.22 ? P CMP 2 A 1 
HETATM 2 O O1P CMP . . . E 4 52.002 4.898 34.394 1 85.22 ? O1P CMP 2 A 1 
HETATM 3 O O2P CMP . . . E 4 50.502 5.493 32.351 1 85.22 ? O2P CMP 2 A 1 
HETATM 4 O O5' CMP . . . E 4 49.981 3.479 33.772 1 85.22 ? O5' CMP 2 A 1 
HETATM 5 C C5' CMP . . . E 4 49.173 3.034 34.873 1 85.1 ? C5' CMP 2 A 1 
HETATM 6 C C4' CMP . . . E 4 48.307 4.17 35.325 1 85.22 ? C4' CMP 2 A 1 
HETATM 7 O O4' CMP . . . E 4 47.456 3.874 36.464 1 85.22 ? O4' CMP 2 A 1 
HETATM 8 C C3' CMP . . . E 4 49.151 5.312 35.833 1 85.22 ? C3' CMP 2 A 1 
HETATM 9 O O3' CMP . . . E 4 49.728 5.877 34.685 1 85.22 ? O3' CMP 2 A 1 
HETATM 10 C C2' CMP . . . E 4 48.098 6.173 36.504 1 85.22 ? C2' CMP 2 A 1 
HETATM 11 O O2' CMP . . . E 4 47.38 6.887 35.498 1 58.02 ? O2' CMP 2 A 1 
HETATM 12 C C1' CMP . . . E 4 47.231 5.089 37.184 1 84.72 ? C1' CMP 2 A 1 
HETATM 13 N N9 CMP . . . E 4 47.521 4.846 38.603 1 77.31 ? N9 CMP 2 A 1 
HETATM 14 C C8 CMP . . . E 4 46.645 4.456 39.578 1 74.3 ? C8 CMP 2 A 1 
HETATM 15 N N7 CMP . . . E 4 47.195 4.316 40.755 1 78.07 ? N7 CMP 2 A 1 
HETATM 16 C C5 CMP . . . E 4 48.528 4.638 40.543 1 80.87 ? C5 CMP 2 A 1 
HETATM 17 C C6 CMP . . . E 4 49.659 4.669 41.401 1 85.22 ? C6 CMP 2 A 1 
HETATM 18 N N6 CMP . . . E 4 49.616 4.391 42.713 1 85.22 ? N6 CMP 2 A 1 
HETATM 19 N N1 CMP . . . E 4 50.856 5.001 40.855 1 85.22 ? N1 CMP 2 A 1 
HETATM 20 C C2 CMP . . . E 4 50.902 5.292 39.552 1 85.22 ? C2 CMP 2 A 1 
HETATM 21 N N3 CMP . . . E 4 49.913 5.309 38.654 1 85.18 ? N3 CMP 2 A 1 
HETATM 22 C C4 CMP . . . E 4 48.741 4.965 39.222 1 79.21 ? C4 CMP 2 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           22 
#