data_1O47 # _model_server_result.job_id '_ZGLt6vi5VzEO9PbFnIiSA' _model_server_result.datetime_utc '2024-10-17 12:24:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1O47 # _exptl.entry_id 1O47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 613.589 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-ACETYL-N-[1-(1,1'-BIPHENYL-4-YLMETHYL)-2-OXOAZEPAN-3-YL]-4-[DIFLUORO(PHOSPHONO)METHYL]PHENYLALANINAMIDE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1O47 _cell.length_a 26.588 _cell.length_b 59.021 _cell.length_c 65.057 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H34 F2 N3 O6 P' _chem_comp.formula_weight 613.589 _chem_comp.id 822 _chem_comp.mon_nstd_flag . _chem_comp.name "N-ACETYL-N-[1-(1,1'-BIPHENYL-4-YLMETHYL)-2-OXOAZEPAN-3-YL]-4-[DIFLUORO(PHOSPHONO)METHYL]PHENYLALANINAMIDE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RU82209 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 822 sing 1 n y C1 C6 822 doub 2 n y C1 C18 822 sing 3 n n C2 C3 822 doub 4 n y C2 H2 822 sing 5 n n C3 C4 822 sing 6 n y C3 H3 822 sing 7 n n C4 C5 822 doub 8 n y C4 C11 822 sing 9 n n C5 C6 822 sing 10 n y C5 H5 822 sing 11 n n C6 H6 822 sing 12 n n C11 F12 822 sing 13 n n C11 F13 822 sing 14 n n C11 P14 822 sing 15 n n P14 O15 822 doub 16 n n P14 O16 822 sing 17 n n P14 O17 822 sing 18 n n O16 H16 822 sing 19 n n O17 H17 822 sing 20 n n C18 C19 822 sing 21 n n C18 H181 822 sing 22 n n C18 H182 822 sing 23 n n C19 C22 822 sing 24 n n C19 N25 822 sing 25 n n C19 H19 822 sing 26 n n C22 N23 822 sing 27 n n C22 O24 822 doub 28 n n N23 C32 822 sing 29 n n N23 H23 822 sing 30 n n N25 C26 822 sing 31 n n N25 H25 822 sing 32 n n C26 O27 822 doub 33 n n C26 C28 822 sing 34 n n C28 H281 822 sing 35 n n C28 H282 822 sing 36 n n C28 H283 822 sing 37 n n C32 C33 822 sing 38 n n C32 C49 822 sing 39 n n C32 H32 822 sing 40 n n C33 N34 822 sing 41 n n C33 O37 822 doub 42 n n N34 C38 822 sing 43 n n N34 C42 822 sing 44 n n C38 C39 822 sing 45 n n C38 H381 822 sing 46 n n C38 H382 822 sing 47 n n C39 C46 822 sing 48 n n C39 H391 822 sing 49 n n C39 H392 822 sing 50 n n C42 C43 822 sing 51 n n C42 H421 822 sing 52 n n C42 H422 822 sing 53 n n C43 C58 822 sing 54 n y C43 C62 822 doub 55 n y C46 C49 822 sing 56 n n C46 H461 822 sing 57 n n C46 H462 822 sing 58 n n C49 H491 822 sing 59 n n C49 H492 822 sing 60 n n C58 C59 822 doub 61 n y C58 H58 822 sing 62 n n C59 C60 822 sing 63 n y C59 H59 822 sing 64 n n C60 C61 822 doub 65 n y C60 C67 822 sing 66 n y C61 C62 822 sing 67 n y C61 H61 822 sing 68 n n C62 H62 822 sing 69 n n C67 C68 822 sing 70 n y C67 C72 822 doub 71 n y C68 C69 822 doub 72 n y C68 H68 822 sing 73 n n C69 C70 822 sing 74 n y C69 H69 822 sing 75 n n C70 C71 822 doub 76 n y C70 H70 822 sing 77 n n C71 C72 822 sing 78 n y C71 H71 822 sing 79 n n C72 H72 822 sing 80 n n # _atom_sites.entry_id 1O47 _atom_sites.fract_transf_matrix[1][1] 0.037611 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016943 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 822 A 1 300 1 822 INH . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 21 HOH HOH . C 3 HOH A 22 322 22 HOH HOH . C 3 HOH A 23 323 23 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 30 HOH HOH . C 3 HOH A 30 330 31 HOH HOH . C 3 HOH A 31 331 32 HOH HOH . C 3 HOH A 32 332 33 HOH HOH . C 3 HOH A 33 333 34 HOH HOH . C 3 HOH A 34 334 36 HOH HOH . C 3 HOH A 35 335 38 HOH HOH . C 3 HOH A 36 336 39 HOH HOH . C 3 HOH A 37 337 40 HOH HOH . C 3 HOH A 38 338 41 HOH HOH . C 3 HOH A 39 339 43 HOH HOH . C 3 HOH A 40 340 44 HOH HOH . C 3 HOH A 41 341 45 HOH HOH . C 3 HOH A 42 342 46 HOH HOH . C 3 HOH A 43 343 47 HOH HOH . C 3 HOH A 44 344 48 HOH HOH . C 3 HOH A 45 345 49 HOH HOH . C 3 HOH A 46 346 50 HOH HOH . C 3 HOH A 47 347 55 HOH HOH . C 3 HOH A 48 348 57 HOH HOH . C 3 HOH A 49 349 58 HOH HOH . C 3 HOH A 50 350 59 HOH HOH . C 3 HOH A 51 351 60 HOH HOH . C 3 HOH A 52 352 62 HOH HOH . C 3 HOH A 53 353 63 HOH HOH . C 3 HOH A 54 354 64 HOH HOH . C 3 HOH A 55 355 66 HOH HOH . C 3 HOH A 56 356 68 HOH HOH . C 3 HOH A 57 357 71 HOH HOH . C 3 HOH A 58 358 72 HOH HOH . C 3 HOH A 59 359 74 HOH HOH . C 3 HOH A 60 360 75 HOH HOH . C 3 HOH A 61 361 78 HOH HOH . C 3 HOH A 62 362 82 HOH HOH . C 3 HOH A 63 363 83 HOH HOH . C 3 HOH A 64 364 86 HOH HOH . C 3 HOH A 65 365 89 HOH HOH . C 3 HOH A 66 366 90 HOH HOH . C 3 HOH A 67 367 91 HOH HOH . C 3 HOH A 68 368 92 HOH HOH . C 3 HOH A 69 369 94 HOH HOH . C 3 HOH A 70 370 96 HOH HOH . C 3 HOH A 71 371 98 HOH HOH . C 3 HOH A 72 372 99 HOH HOH . C 3 HOH A 73 373 102 HOH HOH . C 3 HOH A 74 374 103 HOH HOH . C 3 HOH A 75 375 104 HOH HOH . C 3 HOH A 76 376 105 HOH HOH . C 3 HOH A 77 377 107 HOH HOH . C 3 HOH A 78 378 108 HOH HOH . C 3 HOH A 79 379 109 HOH HOH . C 3 HOH A 80 380 110 HOH HOH . C 3 HOH A 81 381 111 HOH HOH . C 3 HOH A 82 382 112 HOH HOH . C 3 HOH A 83 383 113 HOH HOH . C 3 HOH A 84 384 114 HOH HOH . C 3 HOH A 85 385 115 HOH HOH . C 3 HOH A 86 386 118 HOH HOH . C 3 HOH A 87 387 123 HOH HOH . C 3 HOH A 88 388 128 HOH HOH . C 3 HOH A 89 389 132 HOH HOH . C 3 HOH A 90 390 133 HOH HOH . C 3 HOH A 91 391 134 HOH HOH . C 3 HOH A 92 392 141 HOH HOH . C 3 HOH A 93 393 150 HOH HOH . C 3 HOH A 94 394 152 HOH HOH . C 3 HOH A 95 395 154 HOH HOH . C 3 HOH A 96 396 160 HOH HOH . C 3 HOH A 97 397 170 HOH HOH . C 3 HOH A 98 398 171 HOH HOH . C 3 HOH A 99 399 179 HOH HOH . C 3 HOH A 100 400 181 HOH HOH . C 3 HOH A 101 401 186 HOH HOH . C 3 HOH A 102 402 187 HOH HOH . C 3 HOH A 103 403 188 HOH HOH . C 3 HOH A 104 404 189 HOH HOH . C 3 HOH A 105 405 190 HOH HOH . C 3 HOH A 106 406 191 HOH HOH . C 3 HOH A 107 407 192 HOH HOH . C 3 HOH A 108 408 193 HOH HOH . C 3 HOH A 109 409 194 HOH HOH . C 3 HOH A 110 410 195 HOH HOH . C 3 HOH A 111 411 197 HOH HOH . C 3 HOH A 112 412 198 HOH HOH . C 3 HOH A 113 413 199 HOH HOH . C 3 HOH A 114 414 200 HOH HOH . C 3 HOH A 115 415 201 HOH HOH . C 3 HOH A 116 416 202 HOH HOH . C 3 HOH A 117 417 203 HOH HOH . C 3 HOH A 118 418 204 HOH HOH . C 3 HOH A 119 419 205 HOH HOH . C 3 HOH A 120 420 206 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 822 . . . B 2 19.424 24.957 20.125 1 18.14 ? C1 822 300 A 1 HETATM 2 C C2 822 . . . B 2 19.98 25.896 19.251 1 19.29 ? C2 822 300 A 1 HETATM 3 C C3 822 . . . B 2 19.192 26.379 18.181 1 21.99 ? C3 822 300 A 1 HETATM 4 C C4 822 . . . B 2 17.802 26 18.091 1 22.12 ? C4 822 300 A 1 HETATM 5 C C5 822 . . . B 2 17.285 25.07 18.997 1 19 ? C5 822 300 A 1 HETATM 6 C C6 822 . . . B 2 18.083 24.502 19.987 1 17.72 ? C6 822 300 A 1 HETATM 7 C C11 822 . . . B 2 16.919 26.646 17.014 1 24.47 ? C11 822 300 A 1 HETATM 8 F F12 822 . . . B 2 15.889 25.817 16.71 1 24.06 ? F12 822 300 A 1 HETATM 9 F F13 822 . . . B 2 17.614 26.876 15.872 1 25.14 ? F13 822 300 A 1 HETATM 10 P P14 822 . . . B 2 16.322 28.346 17.448 1 25.41 ? P14 822 300 A 1 HETATM 11 O O15 822 . . . B 2 15.194 28.7 16.453 1 27.28 ? O15 822 300 A 1 HETATM 12 O O16 822 . . . B 2 17.382 29.33 17.251 1 26.88 ? O16 822 300 A 1 HETATM 13 O O17 822 . . . B 2 15.689 28.476 18.865 1 24.9 ? O17 822 300 A 1 HETATM 14 C C18 822 . . . B 2 20.307 24.395 21.177 1 16.37 ? C18 822 300 A 1 HETATM 15 C C19 822 . . . B 2 19.948 25.017 22.521 1 15.94 ? C19 822 300 A 1 HETATM 16 C C22 822 . . . B 2 20.696 24.299 23.618 1 16.9 ? C22 822 300 A 1 HETATM 17 N N23 822 . . . B 2 19.966 23.275 24.18 1 14.68 ? N23 822 300 A 1 HETATM 18 O O24 822 . . . B 2 21.853 24.655 23.928 1 16.74 ? O24 822 300 A 1 HETATM 19 N N25 822 . . . B 2 20.283 26.422 22.537 1 18.12 ? N25 822 300 A 1 HETATM 20 C C26 822 . . . B 2 19.561 27.345 23.164 1 17.83 ? C26 822 300 A 1 HETATM 21 O O27 822 . . . B 2 18.62 27.065 23.898 1 19.83 ? O27 822 300 A 1 HETATM 22 C C28 822 . . . B 2 19.967 28.821 22.838 1 18.17 ? C28 822 300 A 1 HETATM 23 C C32 822 . . . B 2 20.577 22.341 25.085 1 13.1 ? C32 822 300 A 1 HETATM 24 C C33 822 . . . B 2 21.628 21.546 24.261 1 12.88 ? C33 822 300 A 1 HETATM 25 N N34 822 . . . B 2 22.433 20.607 24.969 1 11.66 ? N34 822 300 A 1 HETATM 26 O O37 822 . . . B 2 21.759 21.665 23.038 1 12.27 ? O37 822 300 A 1 HETATM 27 C C38 822 . . . B 2 22.257 20.268 26.396 1 12.55 ? C38 822 300 A 1 HETATM 28 C C39 822 . . . B 2 20.935 19.543 26.611 1 12.2 ? C39 822 300 A 1 HETATM 29 C C42 822 . . . B 2 23.385 19.725 24.236 1 12.36 ? C42 822 300 A 1 HETATM 30 C C43 822 . . . B 2 22.769 18.366 23.943 1 11.73 ? C43 822 300 A 1 HETATM 31 C C46 822 . . . B 2 19.763 20.543 26.823 1 13.04 ? C46 822 300 A 1 HETATM 32 C C49 822 . . . B 2 19.448 21.442 25.581 1 13.32 ? C49 822 300 A 1 HETATM 33 C C58 822 . . . B 2 21.695 18.298 23.016 1 14.36 ? C58 822 300 A 1 HETATM 34 C C59 822 . . . B 2 21.081 17.048 22.727 1 12.91 ? C59 822 300 A 1 HETATM 35 C C60 822 . . . B 2 21.603 15.93 23.39 1 13.85 ? C60 822 300 A 1 HETATM 36 C C61 822 . . . B 2 22.653 16.003 24.333 1 10.48 ? C61 822 300 A 1 HETATM 37 C C62 822 . . . B 2 23.222 17.22 24.614 1 11.62 ? C62 822 300 A 1 HETATM 38 C C67 822 . . . B 2 20.93 14.624 23.089 1 14.36 ? C67 822 300 A 1 HETATM 39 C C68 822 . . . B 2 21.663 13.405 23.005 1 15.37 ? C68 822 300 A 1 HETATM 40 C C69 822 . . . B 2 20.967 12.193 22.717 1 14.15 ? C69 822 300 A 1 HETATM 41 C C70 822 . . . B 2 19.583 12.175 22.533 1 14.05 ? C70 822 300 A 1 HETATM 42 C C71 822 . . . B 2 18.825 13.349 22.696 1 14.63 ? C71 822 300 A 1 HETATM 43 C C72 822 . . . B 2 19.501 14.572 22.955 1 15.61 ? C72 822 300 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #