data_1O4A # _model_server_result.job_id bVWx1zdYb-cp9pBSbq8tkA _model_server_result.datetime_utc '2024-10-17 12:30:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o4a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1O4A # _exptl.entry_id 1O4A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 555.621 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[2-ACETYLAMINO-2-(1-BIPHENYL-4-YLMETHYL-2-OXO-AZEPAN-3-YLCARBAMOYL)-ETHYL]-2-FORMYL-BENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1O4A _cell.length_a 26.414 _cell.length_b 58.679 _cell.length_c 63.499 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O4A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 44 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 44 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C71 _struct_conn.ptnr2_label_comp_id 197 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 197 _struct_conn.ptnr2_auth_seq_id 300 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.743 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C32 H33 N3 O6' _chem_comp.formula_weight 555.621 _chem_comp.id 197 _chem_comp.mon_nstd_flag . _chem_comp.name '4-[2-ACETYLAMINO-2-(1-BIPHENYL-4-YLMETHYL-2-OXO-AZEPAN-3-YLCARBAMOYL)-ETHYL]-2-FORMYL-BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RU82197 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 197 sing 1 n y C1 C6 197 doub 2 n y C1 H1 197 sing 3 n n C2 C3 197 doub 4 n y C2 H2 197 sing 5 n n C3 C4 197 sing 6 n y C3 C68 197 sing 7 n n C4 C5 197 doub 8 n y C4 C71 197 sing 9 n n C5 C6 197 sing 10 n y C5 H5 197 sing 11 n n C6 C7 197 sing 12 n n C7 C8 197 sing 13 n n C7 H71A 197 sing 14 n n C7 H72 197 sing 15 n n C8 C9 197 sing 16 n n C8 N11 197 sing 17 n n C8 H8 197 sing 18 n n C9 N10 197 sing 19 n n C9 O15 197 doub 20 n n N10 C16 197 sing 21 n n N10 H10 197 sing 22 n n N11 C12 197 sing 23 n n N11 H11 197 sing 24 n n C12 C13 197 sing 25 n n C12 O14 197 doub 26 n n C13 H131 197 sing 27 n n C13 H132 197 sing 28 n n C13 H133 197 sing 29 n n C16 C17 197 sing 30 n n C16 C22 197 sing 31 n n C16 H16 197 sing 32 n n C17 C18 197 sing 33 n n C17 H171 197 sing 34 n n C17 H172 197 sing 35 n n C18 C19 197 sing 36 n n C18 H181 197 sing 37 n n C18 H182 197 sing 38 n n C19 C20 197 sing 39 n n C19 H191 197 sing 40 n n C19 H192 197 sing 41 n n C20 N21 197 sing 42 n n C20 H201 197 sing 43 n n C20 H202 197 sing 44 n n N21 C22 197 sing 45 n n N21 C23 197 sing 46 n n C22 O25 197 doub 47 n n C23 C24 197 sing 48 n n C23 H231 197 sing 49 n n C23 H232 197 sing 50 n n C24 C46 197 sing 51 n y C24 C50 197 doub 52 n y C46 C47 197 doub 53 n y C46 H46 197 sing 54 n n C47 C48 197 sing 55 n y C47 H47 197 sing 56 n n C48 C49 197 doub 57 n y C48 C55 197 sing 58 n y C49 C50 197 sing 59 n y C49 H49 197 sing 60 n n C50 H50 197 sing 61 n n C55 C56 197 sing 62 n y C55 C60 197 doub 63 n y C56 C57 197 doub 64 n y C56 H56 197 sing 65 n n C57 C58 197 sing 66 n y C57 H57 197 sing 67 n n C58 C59 197 doub 68 n y C58 H58 197 sing 69 n n C59 C60 197 sing 70 n y C59 H59 197 sing 71 n n C60 H60 197 sing 72 n n C68 O69 197 sing 73 n n C68 O70 197 doub 74 n n O69 H69 197 sing 75 n n C71 O72 197 doub 76 n n C71 H71 197 sing 77 n n # _atom_sites.entry_id 1O4A _atom_sites.fract_transf_matrix[1][1] 0.037859 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 197 A 1 300 1 197 INH . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 21 HOH HOH . C 3 HOH A 22 322 22 HOH HOH . C 3 HOH A 23 323 23 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 29 HOH HOH . C 3 HOH A 30 330 30 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 32 HOH HOH . C 3 HOH A 33 333 33 HOH HOH . C 3 HOH A 34 334 34 HOH HOH . C 3 HOH A 35 335 35 HOH HOH . C 3 HOH A 36 336 36 HOH HOH . C 3 HOH A 37 337 37 HOH HOH . C 3 HOH A 38 338 38 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 40 HOH HOH . C 3 HOH A 41 341 41 HOH HOH . C 3 HOH A 42 342 42 HOH HOH . C 3 HOH A 43 343 43 HOH HOH . C 3 HOH A 44 344 44 HOH HOH . C 3 HOH A 45 345 45 HOH HOH . C 3 HOH A 46 346 46 HOH HOH . C 3 HOH A 47 347 47 HOH HOH . C 3 HOH A 48 348 48 HOH HOH . C 3 HOH A 49 349 49 HOH HOH . C 3 HOH A 50 350 50 HOH HOH . C 3 HOH A 51 351 51 HOH HOH . C 3 HOH A 52 352 52 HOH HOH . C 3 HOH A 53 353 53 HOH HOH . C 3 HOH A 54 354 54 HOH HOH . C 3 HOH A 55 355 55 HOH HOH . C 3 HOH A 56 356 56 HOH HOH . C 3 HOH A 57 357 57 HOH HOH . C 3 HOH A 58 358 58 HOH HOH . C 3 HOH A 59 359 59 HOH HOH . C 3 HOH A 60 360 60 HOH HOH . C 3 HOH A 61 361 61 HOH HOH . C 3 HOH A 62 362 62 HOH HOH . C 3 HOH A 63 363 63 HOH HOH . C 3 HOH A 64 364 64 HOH HOH . C 3 HOH A 65 365 65 HOH HOH . C 3 HOH A 66 366 66 HOH HOH . C 3 HOH A 67 367 67 HOH HOH . C 3 HOH A 68 368 68 HOH HOH . C 3 HOH A 69 369 69 HOH HOH . C 3 HOH A 70 370 70 HOH HOH . C 3 HOH A 71 371 71 HOH HOH . C 3 HOH A 72 372 72 HOH HOH . C 3 HOH A 73 373 73 HOH HOH . C 3 HOH A 74 374 74 HOH HOH . C 3 HOH A 75 375 75 HOH HOH . C 3 HOH A 76 376 76 HOH HOH . C 3 HOH A 77 377 77 HOH HOH . C 3 HOH A 78 378 78 HOH HOH . C 3 HOH A 79 379 79 HOH HOH . C 3 HOH A 80 380 80 HOH HOH . C 3 HOH A 81 381 81 HOH HOH . C 3 HOH A 82 382 82 HOH HOH . C 3 HOH A 83 383 83 HOH HOH . C 3 HOH A 84 384 84 HOH HOH . C 3 HOH A 85 385 85 HOH HOH . C 3 HOH A 86 386 86 HOH HOH . C 3 HOH A 87 387 87 HOH HOH . C 3 HOH A 88 388 88 HOH HOH . C 3 HOH A 89 389 89 HOH HOH . C 3 HOH A 90 390 90 HOH HOH . C 3 HOH A 91 391 91 HOH HOH . C 3 HOH A 92 392 92 HOH HOH . C 3 HOH A 93 393 93 HOH HOH . C 3 HOH A 94 394 94 HOH HOH . C 3 HOH A 95 395 95 HOH HOH . C 3 HOH A 96 396 96 HOH HOH . C 3 HOH A 97 397 97 HOH HOH . C 3 HOH A 98 398 98 HOH HOH . C 3 HOH A 99 399 99 HOH HOH . C 3 HOH A 100 400 100 HOH HOH . C 3 HOH A 101 401 101 HOH HOH . C 3 HOH A 102 402 102 HOH HOH . C 3 HOH A 103 403 103 HOH HOH . C 3 HOH A 104 404 104 HOH HOH . C 3 HOH A 105 405 105 HOH HOH . C 3 HOH A 106 406 106 HOH HOH . C 3 HOH A 107 407 107 HOH HOH . C 3 HOH A 108 408 108 HOH HOH . C 3 HOH A 109 409 109 HOH HOH . C 3 HOH A 110 410 110 HOH HOH . C 3 HOH A 111 411 111 HOH HOH . C 3 HOH A 112 412 112 HOH HOH . C 3 HOH A 113 413 113 HOH HOH . C 3 HOH A 114 414 114 HOH HOH . C 3 HOH A 115 415 115 HOH HOH . C 3 HOH A 116 416 116 HOH HOH . C 3 HOH A 117 417 117 HOH HOH . C 3 HOH A 118 418 118 HOH HOH . C 3 HOH A 119 419 119 HOH HOH . C 3 HOH A 120 420 120 HOH HOH . C 3 HOH A 121 421 121 HOH HOH . C 3 HOH A 122 422 122 HOH HOH . C 3 HOH A 123 423 123 HOH HOH . C 3 HOH A 124 424 124 HOH HOH . C 3 HOH A 125 425 125 HOH HOH . C 3 HOH A 126 426 126 HOH HOH . C 3 HOH A 127 427 127 HOH HOH . C 3 HOH A 128 428 128 HOH HOH . C 3 HOH A 129 429 129 HOH HOH . C 3 HOH A 130 430 130 HOH HOH . C 3 HOH A 131 431 131 HOH HOH . C 3 HOH A 132 432 132 HOH HOH . C 3 HOH A 133 433 133 HOH HOH . C 3 HOH A 134 434 134 HOH HOH . C 3 HOH A 135 435 135 HOH HOH . C 3 HOH A 136 436 136 HOH HOH . C 3 HOH A 137 437 137 HOH HOH . C 3 HOH A 138 438 138 HOH HOH . C 3 HOH A 139 439 139 HOH HOH . C 3 HOH A 140 440 140 HOH HOH . C 3 HOH A 141 441 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 197 . . . B 2 19.765 25.716 18.033 1 22.98 ? C1 197 300 A 1 HETATM 2 C C2 197 . . . B 2 19.112 26.4 16.976 1 23.34 ? C2 197 300 A 1 HETATM 3 C C3 197 . . . B 2 17.676 26.362 16.822 1 23.4 ? C3 197 300 A 1 HETATM 4 C C4 197 . . . B 2 16.949 25.568 17.76 1 22.64 ? C4 197 300 A 1 HETATM 5 C C5 197 . . . B 2 17.595 24.947 18.881 1 22.31 ? C5 197 300 A 1 HETATM 6 C C6 197 . . . B 2 18.991 25.023 19.009 1 22.3 ? C6 197 300 A 1 HETATM 7 C C7 197 . . . B 2 19.677 24.367 20.19 1 23 ? C7 197 300 A 1 HETATM 8 C C8 197 . . . B 2 19.297 25.039 21.516 1 22.21 ? C8 197 300 A 1 HETATM 9 C C9 197 . . . B 2 20.057 24.325 22.596 1 22.4 ? C9 197 300 A 1 HETATM 10 N N10 197 . . . B 2 19.348 23.298 23.115 1 19.1 ? N10 197 300 A 1 HETATM 11 N N11 197 . . . B 2 19.728 26.45 21.574 1 25.8 ? N11 197 300 A 1 HETATM 12 C C12 197 . . . B 2 18.877 27.474 21.6 1 27.46 ? C12 197 300 A 1 HETATM 13 C C13 197 . . . B 2 19.667 28.78 21.421 1 27.64 ? C13 197 300 A 1 HETATM 14 O O14 197 . . . B 2 17.642 27.415 21.607 1 28.45 ? O14 197 300 A 1 HETATM 15 O O15 197 . . . B 2 21.211 24.665 22.941 1 22.33 ? O15 197 300 A 1 HETATM 16 C C16 197 . . . B 2 20.004 22.329 23.943 1 19.57 ? C16 197 300 A 1 HETATM 17 C C17 197 . . . B 2 18.888 21.463 24.538 1 17.86 ? C17 197 300 A 1 HETATM 18 C C18 197 . . . B 2 19.424 20.853 25.82 1 16.91 ? C18 197 300 A 1 HETATM 19 C C19 197 . . . B 2 20.595 19.908 25.825 1 17.26 ? C19 197 300 A 1 HETATM 20 C C20 197 . . . B 2 21.942 20.458 25.34 1 18.98 ? C20 197 300 A 1 HETATM 21 N N21 197 . . . B 2 22.039 20.701 23.889 1 19.47 ? N21 197 300 A 1 HETATM 22 C C22 197 . . . B 2 21.154 21.513 23.134 1 19.4 ? C22 197 300 A 1 HETATM 23 C C23 197 . . . B 2 23.034 19.831 23.204 1 20.39 ? C23 197 300 A 1 HETATM 24 C C24 197 . . . B 2 22.441 18.494 22.966 1 21.1 ? C24 197 300 A 1 HETATM 25 O O25 197 . . . B 2 21.183 21.618 21.897 1 19.56 ? O25 197 300 A 1 HETATM 26 C C46 197 . . . B 2 22.984 17.285 23.573 1 21.57 ? C46 197 300 A 1 HETATM 27 C C47 197 . . . B 2 22.353 15.997 23.382 1 20.03 ? C47 197 300 A 1 HETATM 28 C C48 197 . . . B 2 21.169 15.98 22.569 1 20.35 ? C48 197 300 A 1 HETATM 29 C C49 197 . . . B 2 20.636 17.175 21.984 1 21.57 ? C49 197 300 A 1 HETATM 30 C C50 197 . . . B 2 21.265 18.454 22.163 1 21.23 ? C50 197 300 A 1 HETATM 31 C C55 197 . . . B 2 20.427 14.722 22.257 1 19.39 ? C55 197 300 A 1 HETATM 32 C C56 197 . . . B 2 21.172 13.533 22.06 1 18.61 ? C56 197 300 A 1 HETATM 33 C C57 197 . . . B 2 20.494 12.336 21.759 1 18.17 ? C57 197 300 A 1 HETATM 34 C C58 197 . . . B 2 19.067 12.376 21.67 1 18.47 ? C58 197 300 A 1 HETATM 35 C C59 197 . . . B 2 18.311 13.595 21.911 1 18.92 ? C59 197 300 A 1 HETATM 36 C C60 197 . . . B 2 19.009 14.768 22.186 1 18.44 ? C60 197 300 A 1 HETATM 37 C C68 197 . . . B 2 17.058 27.21 15.736 1 22.67 ? C68 197 300 A 1 HETATM 38 O O69 197 . . . B 2 17.584 27.488 14.72 1 24.81 ? O69 197 300 A 1 HETATM 39 O O70 197 . . . B 2 15.857 27.658 15.851 1 23.9 ? O70 197 300 A 1 HETATM 40 C C71 197 . . . B 2 15.532 25.491 17.784 1 21.34 ? C71 197 300 A 1 HETATM 41 O O72 197 . . . B 2 14.867 26.629 18.207 1 26.17 ? O72 197 300 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #