data_1O4G # _model_server_result.job_id Kw2QFRSX7RZWyqZXsBVdLQ _model_server_result.datetime_utc '2024-10-17 12:26:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o4g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1O4G # _exptl.entry_id 1O4G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.176 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HYDROXY(1-NAPHTHYL)METHYLPHOSPHONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1O4G _cell.length_a 26.4 _cell.length_b 58.967 _cell.length_c 63.802 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O4G _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 43 A TYR 43 1_555 A N CSO 44 A CSO 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C CSO 44 A CSO 44 1_555 A N LEU 45 A LEU 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C11 H11 O4 P' _chem_comp.formula_weight 238.176 _chem_comp.id I59 _chem_comp.mon_nstd_flag . _chem_comp.name 'HYDROXY(1-NAPHTHYL)METHYLPHOSPHONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DPI59 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 I59 sing 166 n y C1 C6 I59 doub 167 n y C1 H1 I59 sing 168 n n C2 C3 I59 doub 169 n y C2 H2 I59 sing 170 n n C3 C4 I59 sing 171 n y C3 C7 I59 sing 172 n y C4 C5 I59 doub 173 n y C4 C10 I59 sing 174 n y C5 C6 I59 sing 175 n y C5 H5 I59 sing 176 n n C6 H6 I59 sing 177 n n C7 C8 I59 doub 178 n y C7 H7 I59 sing 179 n n C8 C9 I59 sing 180 n y C8 H8 I59 sing 181 n n C9 C10 I59 doub 182 n y C9 H9 I59 sing 183 n n C10 C11 I59 sing 184 n n C11 O12 I59 sing 185 n n C11 P13 I59 sing 186 n n C11 H11 I59 sing 187 n n O12 H12 I59 sing 188 n n P13 O15 I59 doub 189 n n P13 O16 I59 sing 190 n n P13 O17 I59 sing 191 n n O16 H16 I59 sing 192 n n O17 H17 I59 sing 193 n n # _atom_sites.entry_id 1O4G _atom_sites.fract_transf_matrix[1][1] 0.037879 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015673 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I59 A 1 300 1 I59 DPI . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 21 HOH HOH . C 3 HOH A 22 322 22 HOH HOH . C 3 HOH A 23 323 23 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 30 HOH HOH . C 3 HOH A 30 330 31 HOH HOH . C 3 HOH A 31 331 32 HOH HOH . C 3 HOH A 32 332 33 HOH HOH . C 3 HOH A 33 333 34 HOH HOH . C 3 HOH A 34 334 35 HOH HOH . C 3 HOH A 35 335 36 HOH HOH . C 3 HOH A 36 336 37 HOH HOH . C 3 HOH A 37 337 38 HOH HOH . C 3 HOH A 38 338 39 HOH HOH . C 3 HOH A 39 339 40 HOH HOH . C 3 HOH A 40 340 41 HOH HOH . C 3 HOH A 41 341 42 HOH HOH . C 3 HOH A 42 342 43 HOH HOH . C 3 HOH A 43 343 44 HOH HOH . C 3 HOH A 44 344 45 HOH HOH . C 3 HOH A 45 345 46 HOH HOH . C 3 HOH A 46 346 47 HOH HOH . C 3 HOH A 47 347 49 HOH HOH . C 3 HOH A 48 348 50 HOH HOH . C 3 HOH A 49 349 51 HOH HOH . C 3 HOH A 50 350 52 HOH HOH . C 3 HOH A 51 351 54 HOH HOH . C 3 HOH A 52 352 55 HOH HOH . C 3 HOH A 53 353 56 HOH HOH . C 3 HOH A 54 354 57 HOH HOH . C 3 HOH A 55 355 58 HOH HOH . C 3 HOH A 56 356 59 HOH HOH . C 3 HOH A 57 357 60 HOH HOH . C 3 HOH A 58 358 61 HOH HOH . C 3 HOH A 59 359 62 HOH HOH . C 3 HOH A 60 360 64 HOH HOH . C 3 HOH A 61 361 65 HOH HOH . C 3 HOH A 62 362 66 HOH HOH . C 3 HOH A 63 363 67 HOH HOH . C 3 HOH A 64 364 68 HOH HOH . C 3 HOH A 65 365 69 HOH HOH . C 3 HOH A 66 366 70 HOH HOH . C 3 HOH A 67 367 72 HOH HOH . C 3 HOH A 68 368 74 HOH HOH . C 3 HOH A 69 369 75 HOH HOH . C 3 HOH A 70 370 77 HOH HOH . C 3 HOH A 71 371 78 HOH HOH . C 3 HOH A 72 372 81 HOH HOH . C 3 HOH A 73 373 82 HOH HOH . C 3 HOH A 74 374 84 HOH HOH . C 3 HOH A 75 375 85 HOH HOH . C 3 HOH A 76 376 86 HOH HOH . C 3 HOH A 77 377 89 HOH HOH . C 3 HOH A 78 378 91 HOH HOH . C 3 HOH A 79 379 92 HOH HOH . C 3 HOH A 80 380 93 HOH HOH . C 3 HOH A 81 381 94 HOH HOH . C 3 HOH A 82 382 96 HOH HOH . C 3 HOH A 83 383 98 HOH HOH . C 3 HOH A 84 384 99 HOH HOH . C 3 HOH A 85 385 100 HOH HOH . C 3 HOH A 86 386 101 HOH HOH . C 3 HOH A 87 387 102 HOH HOH . C 3 HOH A 88 388 103 HOH HOH . C 3 HOH A 89 389 104 HOH HOH . C 3 HOH A 90 390 105 HOH HOH . C 3 HOH A 91 391 106 HOH HOH . C 3 HOH A 92 392 107 HOH HOH . C 3 HOH A 93 393 108 HOH HOH . C 3 HOH A 94 394 109 HOH HOH . C 3 HOH A 95 395 110 HOH HOH . C 3 HOH A 96 396 111 HOH HOH . C 3 HOH A 97 397 112 HOH HOH . C 3 HOH A 98 398 113 HOH HOH . C 3 HOH A 99 399 114 HOH HOH . C 3 HOH A 100 400 115 HOH HOH . C 3 HOH A 101 401 116 HOH HOH . C 3 HOH A 102 402 118 HOH HOH . C 3 HOH A 103 403 120 HOH HOH . C 3 HOH A 104 404 123 HOH HOH . C 3 HOH A 105 405 124 HOH HOH . C 3 HOH A 106 406 128 HOH HOH . C 3 HOH A 107 407 133 HOH HOH . C 3 HOH A 108 408 134 HOH HOH . C 3 HOH A 109 409 136 HOH HOH . C 3 HOH A 110 410 141 HOH HOH . C 3 HOH A 111 411 149 HOH HOH . C 3 HOH A 112 412 150 HOH HOH . C 3 HOH A 113 413 151 HOH HOH . C 3 HOH A 114 414 152 HOH HOH . C 3 HOH A 115 415 154 HOH HOH . C 3 HOH A 116 416 155 HOH HOH . C 3 HOH A 117 417 156 HOH HOH . C 3 HOH A 118 418 157 HOH HOH . C 3 HOH A 119 419 164 HOH HOH . C 3 HOH A 120 420 167 HOH HOH . C 3 HOH A 121 421 169 HOH HOH . C 3 HOH A 122 422 170 HOH HOH . C 3 HOH A 123 423 171 HOH HOH . C 3 HOH A 124 424 172 HOH HOH . C 3 HOH A 125 425 173 HOH HOH . C 3 HOH A 126 426 175 HOH HOH . C 3 HOH A 127 427 178 HOH HOH . C 3 HOH A 128 428 180 HOH HOH . C 3 HOH A 129 429 181 HOH HOH . C 3 HOH A 130 430 182 HOH HOH . C 3 HOH A 131 431 184 HOH HOH . C 3 HOH A 132 432 185 HOH HOH . C 3 HOH A 133 433 186 HOH HOH . C 3 HOH A 134 434 187 HOH HOH . C 3 HOH A 135 435 189 HOH HOH . C 3 HOH A 136 436 192 HOH HOH . C 3 HOH A 137 437 193 HOH HOH . C 3 HOH A 138 438 194 HOH HOH . C 3 HOH A 139 439 195 HOH HOH . C 3 HOH A 140 440 196 HOH HOH . C 3 HOH A 141 441 197 HOH HOH . C 3 HOH A 142 442 198 HOH HOH . C 3 HOH A 143 443 199 HOH HOH . C 3 HOH A 144 444 200 HOH HOH . C 3 HOH A 145 445 201 HOH HOH . C 3 HOH A 146 446 202 HOH HOH . C 3 HOH A 147 447 203 HOH HOH . C 3 HOH A 148 448 204 HOH HOH . C 3 HOH A 149 449 205 HOH HOH . C 3 HOH A 150 450 206 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I59 . A . B 2 21.862 29.405 15.812 0.25 54.32 ? C1 I59 300 A 1 HETATM 2 C C1 I59 . B . B 2 22.114 29.766 17.161 0.25 56.13 ? C1 I59 300 A 1 HETATM 3 C C2 I59 . A . B 2 21.796 28.799 17.096 0.25 53.89 ? C2 I59 300 A 1 HETATM 4 C C2 I59 . B . B 2 21.58 29.61 15.85 0.25 55.96 ? C2 I59 300 A 1 HETATM 5 C C3 I59 . A . B 2 20.54 28.39 17.591 0.25 53.29 ? C3 I59 300 A 1 HETATM 6 C C3 I59 . B . B 2 20.218 29.249 15.669 0.25 55.62 ? C3 I59 300 A 1 HETATM 7 C C4 I59 . A . B 2 19.321 28.583 16.783 0.25 53 ? C4 I59 300 A 1 HETATM 8 C C4 I59 . B . B 2 19.329 29.017 16.828 0.25 55.28 ? C4 I59 300 A 1 HETATM 9 C C5 I59 . A . B 2 19.429 29.209 15.5 0.25 53.66 ? C5 I59 300 A 1 HETATM 10 C C5 I59 . B . B 2 19.878 29.195 18.155 0.25 55.72 ? C5 I59 300 A 1 HETATM 11 C C6 I59 . A . B 2 20.703 29.612 15.028 0.25 54.12 ? C6 I59 300 A 1 HETATM 12 C C6 I59 . B . B 2 21.26 29.561 18.286 0.25 55.95 ? C6 I59 300 A 1 HETATM 13 C C7 I59 . A . B 2 20.467 27.765 18.853 0.25 53.03 ? C7 I59 300 A 1 HETATM 14 C C7 I59 . B . B 2 19.693 29.145 14.359 0.25 55.6 ? C7 I59 300 A 1 HETATM 15 C C8 I59 . A . B 2 19.225 27.311 19.315 0.25 52.5 ? C8 I59 300 A 1 HETATM 16 C C8 I59 . B . B 2 18.318 28.862 14.171 0.25 55.16 ? C8 I59 300 A 1 HETATM 17 C C9 I59 . A . B 2 18.046 27.48 18.526 0.25 52.24 ? C9 I59 300 A 1 HETATM 18 C C9 I59 . B . B 2 17.463 28.631 15.228 0.25 54.63 ? C9 I59 300 A 1 HETATM 19 C C10 I59 . A . B 2 18.053 28.114 17.264 0.25 51.59 ? C10 I59 300 A 1 HETATM 20 C C10 I59 . B . B 2 17.943 28.669 16.53 0.25 54.25 ? C10 I59 300 A 1 HETATM 21 C C11 I59 . A . B 2 16.812 28.292 16.445 0.25 49.7 ? C11 I59 300 A 1 HETATM 22 C C11 I59 . B . B 2 16.912 28.052 17.365 0.25 52.66 ? C11 I59 300 A 1 HETATM 23 O O12 I59 . A . B 2 16.453 27.122 15.69 0.25 49.34 ? O12 I59 300 A 1 HETATM 24 O O12 I59 . B . B 2 17.394 27.405 18.558 0.25 52.91 ? O12 I59 300 A 1 HETATM 25 P P13 I59 . A . B 2 15.414 29.03 17.363 0.25 47.91 ? P13 I59 300 A 1 HETATM 26 P P13 I59 . B . B 2 15.442 29.061 17.585 0.25 51.18 ? P13 I59 300 A 1 HETATM 27 O O15 I59 . A . B 2 15.849 30.52 17.518 0.25 48.47 ? O15 I59 300 A 1 HETATM 28 O O15 I59 . B . B 2 15.883 30.569 17.657 0.25 51.5 ? O15 I59 300 A 1 HETATM 29 O O16 I59 . A . B 2 15.096 28.387 18.621 0.25 47.89 ? O16 I59 300 A 1 HETATM 30 O O16 I59 . B . B 2 14.775 28.593 18.765 0.25 51.06 ? O16 I59 300 A 1 HETATM 31 O O17 I59 . A . B 2 14.202 29.085 16.447 0.25 47.57 ? O17 I59 300 A 1 HETATM 32 O O17 I59 . B . B 2 14.509 28.974 16.388 0.25 50.7 ? O17 I59 300 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #