data_1O4K # _model_server_result.job_id yzHZ8eRDDHLvEuk0bkbXVA _model_server_result.datetime_utc '2024-11-24 01:08:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o4k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1O4K # _exptl.entry_id 1O4K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.224 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BENZYL 2-FORMYLPHENYL HYDROGEN PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1O4K _cell.length_a 26.341 _cell.length_b 59.924 _cell.length_c 64.163 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O4K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 44 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 44 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C7 _struct_conn.ptnr2_label_comp_id PSN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PSN _struct_conn.ptnr2_auth_seq_id 300 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.825 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H13 O5 P' _chem_comp.formula_weight 292.224 _chem_comp.id PSN _chem_comp.mon_nstd_flag . _chem_comp.name 'BENZYL 2-FORMYLPHENYL HYDROGEN PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PASBN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PSN sing 258 n y C1 C6 PSN doub 259 n y C1 H1 PSN sing 260 n n C2 C3 PSN doub 261 n y C2 H2 PSN sing 262 n n C3 C4 PSN sing 263 n y C3 H3 PSN sing 264 n n C4 C5 PSN doub 265 n y C4 C7 PSN sing 266 n n C5 C6 PSN sing 267 n y C5 O8 PSN sing 268 n n C6 H6 PSN sing 269 n n C7 O25 PSN doub 270 n n C7 H7 PSN sing 271 n n O8 P9 PSN sing 272 n n P9 O10 PSN sing 273 n n P9 O11 PSN doub 274 n n P9 O32 PSN sing 275 n n O10 C12 PSN sing 276 n n C12 C13 PSN sing 277 n n C12 H121 PSN sing 278 n n C12 H122 PSN sing 279 n n C13 C16 PSN doub 280 n y C13 C20 PSN sing 281 n y C16 C17 PSN sing 282 n y C16 H16 PSN sing 283 n n C17 C18 PSN doub 284 n y C17 H17 PSN sing 285 n n C18 C19 PSN sing 286 n y C18 H18 PSN sing 287 n n C19 C20 PSN doub 288 n y C19 H19 PSN sing 289 n n C20 H20 PSN sing 290 n n O32 H32 PSN sing 291 n n # _atom_sites.entry_id 1O4K _atom_sites.fract_transf_matrix[1][1] 0.037964 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016688 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015585 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PSN A 1 300 300 PSN INH . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 21 HOH HOH . C 3 HOH A 22 322 22 HOH HOH . C 3 HOH A 23 323 23 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 29 HOH HOH . C 3 HOH A 30 330 30 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 32 HOH HOH . C 3 HOH A 33 333 33 HOH HOH . C 3 HOH A 34 334 34 HOH HOH . C 3 HOH A 35 335 35 HOH HOH . C 3 HOH A 36 336 36 HOH HOH . C 3 HOH A 37 337 37 HOH HOH . C 3 HOH A 38 338 38 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 40 HOH HOH . C 3 HOH A 41 341 41 HOH HOH . C 3 HOH A 42 342 42 HOH HOH . C 3 HOH A 43 343 43 HOH HOH . C 3 HOH A 44 344 44 HOH HOH . C 3 HOH A 45 345 45 HOH HOH . C 3 HOH A 46 346 46 HOH HOH . C 3 HOH A 47 347 47 HOH HOH . C 3 HOH A 48 348 48 HOH HOH . C 3 HOH A 49 349 49 HOH HOH . C 3 HOH A 50 350 50 HOH HOH . C 3 HOH A 51 351 51 HOH HOH . C 3 HOH A 52 352 52 HOH HOH . C 3 HOH A 53 353 54 HOH HOH . C 3 HOH A 54 354 55 HOH HOH . C 3 HOH A 55 355 57 HOH HOH . C 3 HOH A 56 356 58 HOH HOH . C 3 HOH A 57 357 59 HOH HOH . C 3 HOH A 58 358 60 HOH HOH . C 3 HOH A 59 359 61 HOH HOH . C 3 HOH A 60 360 62 HOH HOH . C 3 HOH A 61 361 64 HOH HOH . C 3 HOH A 62 362 65 HOH HOH . C 3 HOH A 63 363 66 HOH HOH . C 3 HOH A 64 364 67 HOH HOH . C 3 HOH A 65 365 68 HOH HOH . C 3 HOH A 66 366 70 HOH HOH . C 3 HOH A 67 367 71 HOH HOH . C 3 HOH A 68 368 72 HOH HOH . C 3 HOH A 69 369 74 HOH HOH . C 3 HOH A 70 370 75 HOH HOH . C 3 HOH A 71 371 76 HOH HOH . C 3 HOH A 72 372 77 HOH HOH . C 3 HOH A 73 373 78 HOH HOH . C 3 HOH A 74 374 79 HOH HOH . C 3 HOH A 75 375 81 HOH HOH . C 3 HOH A 76 376 82 HOH HOH . C 3 HOH A 77 377 84 HOH HOH . C 3 HOH A 78 378 85 HOH HOH . C 3 HOH A 79 379 86 HOH HOH . C 3 HOH A 80 380 87 HOH HOH . C 3 HOH A 81 381 89 HOH HOH . C 3 HOH A 82 382 90 HOH HOH . C 3 HOH A 83 383 91 HOH HOH . C 3 HOH A 84 384 92 HOH HOH . C 3 HOH A 85 385 93 HOH HOH . C 3 HOH A 86 386 94 HOH HOH . C 3 HOH A 87 387 96 HOH HOH . C 3 HOH A 88 388 98 HOH HOH . C 3 HOH A 89 389 99 HOH HOH . C 3 HOH A 90 390 100 HOH HOH . C 3 HOH A 91 391 101 HOH HOH . C 3 HOH A 92 392 102 HOH HOH . C 3 HOH A 93 393 103 HOH HOH . C 3 HOH A 94 394 104 HOH HOH . C 3 HOH A 95 395 105 HOH HOH . C 3 HOH A 96 396 106 HOH HOH . C 3 HOH A 97 397 107 HOH HOH . C 3 HOH A 98 398 108 HOH HOH . C 3 HOH A 99 399 109 HOH HOH . C 3 HOH A 100 400 110 HOH HOH . C 3 HOH A 101 401 111 HOH HOH . C 3 HOH A 102 402 112 HOH HOH . C 3 HOH A 103 403 114 HOH HOH . C 3 HOH A 104 404 116 HOH HOH . C 3 HOH A 105 405 117 HOH HOH . C 3 HOH A 106 406 118 HOH HOH . C 3 HOH A 107 407 119 HOH HOH . C 3 HOH A 108 408 120 HOH HOH . C 3 HOH A 109 409 123 HOH HOH . C 3 HOH A 110 410 124 HOH HOH . C 3 HOH A 111 411 126 HOH HOH . C 3 HOH A 112 412 128 HOH HOH . C 3 HOH A 113 413 132 HOH HOH . C 3 HOH A 114 414 133 HOH HOH . C 3 HOH A 115 415 136 HOH HOH . C 3 HOH A 116 416 137 HOH HOH . C 3 HOH A 117 417 141 HOH HOH . C 3 HOH A 118 418 149 HOH HOH . C 3 HOH A 119 419 150 HOH HOH . C 3 HOH A 120 420 151 HOH HOH . C 3 HOH A 121 421 152 HOH HOH . C 3 HOH A 122 422 153 HOH HOH . C 3 HOH A 123 423 154 HOH HOH . C 3 HOH A 124 424 155 HOH HOH . C 3 HOH A 125 425 156 HOH HOH . C 3 HOH A 126 426 160 HOH HOH . C 3 HOH A 127 427 161 HOH HOH . C 3 HOH A 128 428 162 HOH HOH . C 3 HOH A 129 429 164 HOH HOH . C 3 HOH A 130 430 165 HOH HOH . C 3 HOH A 131 431 166 HOH HOH . C 3 HOH A 132 432 167 HOH HOH . C 3 HOH A 133 433 169 HOH HOH . C 3 HOH A 134 434 170 HOH HOH . C 3 HOH A 135 435 179 HOH HOH . C 3 HOH A 136 436 181 HOH HOH . C 3 HOH A 137 437 182 HOH HOH . C 3 HOH A 138 438 185 HOH HOH . C 3 HOH A 139 439 186 HOH HOH . C 3 HOH A 140 440 187 HOH HOH . C 3 HOH A 141 441 188 HOH HOH . C 3 HOH A 142 442 189 HOH HOH . C 3 HOH A 143 443 190 HOH HOH . C 3 HOH A 144 444 191 HOH HOH . C 3 HOH A 145 445 192 HOH HOH . C 3 HOH A 146 446 193 HOH HOH . C 3 HOH A 147 447 194 HOH HOH . C 3 HOH A 148 448 195 HOH HOH . C 3 HOH A 149 449 196 HOH HOH . C 3 HOH A 150 450 197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PSN . . . B 2 18.255 26.221 20.886 1 20.15 ? C1 PSN 300 A 1 HETATM 2 C C2 PSN . . . B 2 18.298 24.848 20.5 1 16.2 ? C2 PSN 300 A 1 HETATM 3 C C3 PSN . . . B 2 17.409 24.374 19.484 1 17.96 ? C3 PSN 300 A 1 HETATM 4 C C4 PSN . . . B 2 16.48 25.236 18.809 1 16.79 ? C4 PSN 300 A 1 HETATM 5 C C5 PSN . . . B 2 16.436 26.596 19.232 1 17.57 ? C5 PSN 300 A 1 HETATM 6 C C6 PSN . . . B 2 17.292 27.103 20.294 1 16.81 ? C6 PSN 300 A 1 HETATM 7 C C7 PSN . . . B 2 15.607 24.671 17.714 1 16.65 ? C7 PSN 300 A 1 HETATM 8 O O8 PSN . . . B 2 15.448 27.415 18.587 1 20.99 ? O8 PSN 300 A 1 HETATM 9 P P9 PSN . . . B 2 15.828 28.279 17.291 1 20.13 ? P9 PSN 300 A 1 HETATM 10 O O10 PSN . . . B 2 16.551 29.599 17.58 1 33.05 ? O10 PSN 300 A 1 HETATM 11 O O11 PSN . . . B 2 14.459 28.783 16.749 1 16.31 ? O11 PSN 300 A 1 HETATM 12 C C12 PSN . . . B 2 17.561 29.847 18.63 0 48.07 ? C12 PSN 300 A 1 HETATM 13 C C13 PSN . . . B 2 18.959 29.128 18.441 0 55.36 ? C13 PSN 300 A 1 HETATM 14 C C16 PSN . . . B 2 20.02 29.47 19.379 0 57.38 ? C16 PSN 300 A 1 HETATM 15 C C17 PSN . . . B 2 21.311 28.898 19.155 0 60.23 ? C17 PSN 300 A 1 HETATM 16 C C18 PSN . . . B 2 21.538 27.994 18.029 0 61.3 ? C18 PSN 300 A 1 HETATM 17 C C19 PSN . . . B 2 20.446 27.55 17.199 0 60.17 ? C19 PSN 300 A 1 HETATM 18 C C20 PSN . . . B 2 19.159 28.135 17.387 0 57.72 ? C20 PSN 300 A 1 HETATM 19 O O32 PSN . . . B 2 16.524 27.465 16.187 1 19.7 ? O32 PSN 300 A 1 HETATM 20 O O25 PSN . . . B 2 15.77 24.824 16.382 1 19.05 ? O25 PSN 300 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #