data_1O4L # _model_server_result.job_id Z5dmGpwTnU1S8_DlvZ_DEw _model_server_result.datetime_utc '2024-10-17 12:26:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o4l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1O4L # _exptl.entry_id 1O4L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1O4L _cell.length_a 26.423 _cell.length_b 58.469 _cell.length_c 63.884 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O4L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 1O4L _atom_sites.fract_transf_matrix[1][1] 0.037846 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017103 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015653 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 300 1 CIT CIT . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 21 HOH HOH . C 3 HOH A 22 322 22 HOH HOH . C 3 HOH A 23 323 23 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 29 HOH HOH . C 3 HOH A 30 330 30 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 32 HOH HOH . C 3 HOH A 33 333 33 HOH HOH . C 3 HOH A 34 334 35 HOH HOH . C 3 HOH A 35 335 36 HOH HOH . C 3 HOH A 36 336 37 HOH HOH . C 3 HOH A 37 337 38 HOH HOH . C 3 HOH A 38 338 39 HOH HOH . C 3 HOH A 39 339 40 HOH HOH . C 3 HOH A 40 340 41 HOH HOH . C 3 HOH A 41 341 42 HOH HOH . C 3 HOH A 42 342 43 HOH HOH . C 3 HOH A 43 343 44 HOH HOH . C 3 HOH A 44 344 46 HOH HOH . C 3 HOH A 45 345 47 HOH HOH . C 3 HOH A 46 346 48 HOH HOH . C 3 HOH A 47 347 49 HOH HOH . C 3 HOH A 48 348 50 HOH HOH . C 3 HOH A 49 349 51 HOH HOH . C 3 HOH A 50 350 52 HOH HOH . C 3 HOH A 51 351 53 HOH HOH . C 3 HOH A 52 352 54 HOH HOH . C 3 HOH A 53 353 55 HOH HOH . C 3 HOH A 54 354 56 HOH HOH . C 3 HOH A 55 355 57 HOH HOH . C 3 HOH A 56 356 58 HOH HOH . C 3 HOH A 57 357 59 HOH HOH . C 3 HOH A 58 358 60 HOH HOH . C 3 HOH A 59 359 61 HOH HOH . C 3 HOH A 60 360 62 HOH HOH . C 3 HOH A 61 361 63 HOH HOH . C 3 HOH A 62 362 64 HOH HOH . C 3 HOH A 63 363 65 HOH HOH . C 3 HOH A 64 364 67 HOH HOH . C 3 HOH A 65 365 68 HOH HOH . C 3 HOH A 66 366 69 HOH HOH . C 3 HOH A 67 367 71 HOH HOH . C 3 HOH A 68 368 72 HOH HOH . C 3 HOH A 69 369 73 HOH HOH . C 3 HOH A 70 370 74 HOH HOH . C 3 HOH A 71 371 75 HOH HOH . C 3 HOH A 72 372 76 HOH HOH . C 3 HOH A 73 373 77 HOH HOH . C 3 HOH A 74 374 78 HOH HOH . C 3 HOH A 75 375 79 HOH HOH . C 3 HOH A 76 376 80 HOH HOH . C 3 HOH A 77 377 81 HOH HOH . C 3 HOH A 78 378 82 HOH HOH . C 3 HOH A 79 379 83 HOH HOH . C 3 HOH A 80 380 84 HOH HOH . C 3 HOH A 81 381 85 HOH HOH . C 3 HOH A 82 382 86 HOH HOH . C 3 HOH A 83 383 87 HOH HOH . C 3 HOH A 84 384 88 HOH HOH . C 3 HOH A 85 385 89 HOH HOH . C 3 HOH A 86 386 90 HOH HOH . C 3 HOH A 87 387 91 HOH HOH . C 3 HOH A 88 388 92 HOH HOH . C 3 HOH A 89 389 93 HOH HOH . C 3 HOH A 90 390 94 HOH HOH . C 3 HOH A 91 391 95 HOH HOH . C 3 HOH A 92 392 96 HOH HOH . C 3 HOH A 93 393 97 HOH HOH . C 3 HOH A 94 394 98 HOH HOH . C 3 HOH A 95 395 100 HOH HOH . C 3 HOH A 96 396 101 HOH HOH . C 3 HOH A 97 397 102 HOH HOH . C 3 HOH A 98 398 103 HOH HOH . C 3 HOH A 99 399 104 HOH HOH . C 3 HOH A 100 400 105 HOH HOH . C 3 HOH A 101 401 106 HOH HOH . C 3 HOH A 102 402 108 HOH HOH . C 3 HOH A 103 403 109 HOH HOH . C 3 HOH A 104 404 110 HOH HOH . C 3 HOH A 105 405 111 HOH HOH . C 3 HOH A 106 406 112 HOH HOH . C 3 HOH A 107 407 113 HOH HOH . C 3 HOH A 108 408 114 HOH HOH . C 3 HOH A 109 409 115 HOH HOH . C 3 HOH A 110 410 116 HOH HOH . C 3 HOH A 111 411 117 HOH HOH . C 3 HOH A 112 412 118 HOH HOH . C 3 HOH A 113 413 119 HOH HOH . C 3 HOH A 114 414 120 HOH HOH . C 3 HOH A 115 415 121 HOH HOH . C 3 HOH A 116 416 122 HOH HOH . C 3 HOH A 117 417 123 HOH HOH . C 3 HOH A 118 418 124 HOH HOH . C 3 HOH A 119 419 125 HOH HOH . C 3 HOH A 120 420 126 HOH HOH . C 3 HOH A 121 421 127 HOH HOH . C 3 HOH A 122 422 128 HOH HOH . C 3 HOH A 123 423 129 HOH HOH . C 3 HOH A 124 424 130 HOH HOH . C 3 HOH A 125 425 131 HOH HOH . C 3 HOH A 126 426 133 HOH HOH . C 3 HOH A 127 427 134 HOH HOH . C 3 HOH A 128 428 135 HOH HOH . C 3 HOH A 129 429 136 HOH HOH . C 3 HOH A 130 430 137 HOH HOH . C 3 HOH A 131 431 139 HOH HOH . C 3 HOH A 132 432 140 HOH HOH . C 3 HOH A 133 433 142 HOH HOH . C 3 HOH A 134 434 143 HOH HOH . C 3 HOH A 135 435 148 HOH HOH . C 3 HOH A 136 436 150 HOH HOH . C 3 HOH A 137 437 151 HOH HOH . C 3 HOH A 138 438 152 HOH HOH . C 3 HOH A 139 439 153 HOH HOH . C 3 HOH A 140 440 154 HOH HOH . C 3 HOH A 141 441 155 HOH HOH . C 3 HOH A 142 442 156 HOH HOH . C 3 HOH A 143 443 157 HOH HOH . C 3 HOH A 144 444 158 HOH HOH . C 3 HOH A 145 445 159 HOH HOH . C 3 HOH A 146 446 160 HOH HOH . C 3 HOH A 147 447 161 HOH HOH . C 3 HOH A 148 448 162 HOH HOH . C 3 HOH A 149 449 163 HOH HOH . C 3 HOH A 150 450 164 HOH HOH . C 3 HOH A 151 451 165 HOH HOH . C 3 HOH A 152 452 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . B 2 15.22 28.755 17.727 1 17.14 ? C1 CIT 300 A 1 HETATM 2 O O1 CIT . . . B 2 14.517 28.57 16.605 1 15.97 ? O1 CIT 300 A 1 HETATM 3 O O2 CIT . . . B 2 14.894 28.345 18.829 1 18.85 ? O2 CIT 300 A 1 HETATM 4 C C2 CIT . . . B 2 16.497 29.597 17.593 1 23.41 ? C2 CIT 300 A 1 HETATM 5 C C3 CIT . . . B 2 17.595 28.673 17.062 1 25.18 ? C3 CIT 300 A 1 HETATM 6 O O7 CIT . . . B 2 17.63 27.548 17.942 1 24.31 ? O7 CIT 300 A 1 HETATM 7 C C4 CIT . . . B 2 18.83 29.654 17.136 1 30.96 ? C4 CIT 300 A 1 HETATM 8 C C5 CIT . . . B 2 20.145 29.029 16.586 1 40.28 ? C5 CIT 300 A 1 HETATM 9 O O3 CIT . . . B 2 21.265 29.48 16.903 1 47.91 ? O3 CIT 300 A 1 HETATM 10 O O4 CIT . . . B 2 20.069 27.975 15.734 1 39.11 ? O4 CIT 300 A 1 HETATM 11 C C6 CIT . . . B 2 17.364 28.2 15.689 1 23.44 ? C6 CIT 300 A 1 HETATM 12 O O5 CIT . . . B 2 17.338 29.19 14.792 1 24.07 ? O5 CIT 300 A 1 HETATM 13 O O6 CIT . . . B 2 16.979 27.078 15.398 1 21.73 ? O6 CIT 300 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #