data_1O4M # _model_server_result.job_id 3FlqsMrwF-XY2mFvLcUf8Q _model_server_result.datetime_utc '2024-10-17 12:20:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o4m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1O4M # _exptl.entry_id 1O4M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1O4M _cell.length_a 26.551 _cell.length_b 58.441 _cell.length_c 64.269 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O4M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A MLA sing 218 n n C1 O1B MLA doub 219 n n C1 C2 MLA sing 220 n n O1A H1A MLA sing 221 n n C2 C3 MLA sing 222 n n C2 HC21 MLA sing 223 n n C2 HC22 MLA sing 224 n n C3 O3A MLA doub 225 n n C3 O3B MLA sing 226 n n O3B H3B MLA sing 227 n n # _atom_sites.entry_id 1O4M _atom_sites.fract_transf_matrix[1][1] 0.037663 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01556 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLA A 1 300 300 MLA INH . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 21 HOH HOH . C 3 HOH A 22 322 22 HOH HOH . C 3 HOH A 23 323 23 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 29 HOH HOH . C 3 HOH A 30 330 30 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 32 HOH HOH . C 3 HOH A 33 333 33 HOH HOH . C 3 HOH A 34 334 34 HOH HOH . C 3 HOH A 35 335 35 HOH HOH . C 3 HOH A 36 336 36 HOH HOH . C 3 HOH A 37 337 37 HOH HOH . C 3 HOH A 38 338 38 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 40 HOH HOH . C 3 HOH A 41 341 41 HOH HOH . C 3 HOH A 42 342 42 HOH HOH . C 3 HOH A 43 343 43 HOH HOH . C 3 HOH A 44 344 45 HOH HOH . C 3 HOH A 45 345 46 HOH HOH . C 3 HOH A 46 346 47 HOH HOH . C 3 HOH A 47 347 48 HOH HOH . C 3 HOH A 48 348 49 HOH HOH . C 3 HOH A 49 349 50 HOH HOH . C 3 HOH A 50 350 51 HOH HOH . C 3 HOH A 51 351 52 HOH HOH . C 3 HOH A 52 352 54 HOH HOH . C 3 HOH A 53 353 55 HOH HOH . C 3 HOH A 54 354 56 HOH HOH . C 3 HOH A 55 355 57 HOH HOH . C 3 HOH A 56 356 58 HOH HOH . C 3 HOH A 57 357 59 HOH HOH . C 3 HOH A 58 358 60 HOH HOH . C 3 HOH A 59 359 61 HOH HOH . C 3 HOH A 60 360 62 HOH HOH . C 3 HOH A 61 361 63 HOH HOH . C 3 HOH A 62 362 64 HOH HOH . C 3 HOH A 63 363 65 HOH HOH . C 3 HOH A 64 364 66 HOH HOH . C 3 HOH A 65 365 67 HOH HOH . C 3 HOH A 66 366 68 HOH HOH . C 3 HOH A 67 367 69 HOH HOH . C 3 HOH A 68 368 70 HOH HOH . C 3 HOH A 69 369 71 HOH HOH . C 3 HOH A 70 370 72 HOH HOH . C 3 HOH A 71 371 73 HOH HOH . C 3 HOH A 72 372 74 HOH HOH . C 3 HOH A 73 373 75 HOH HOH . C 3 HOH A 74 374 76 HOH HOH . C 3 HOH A 75 375 77 HOH HOH . C 3 HOH A 76 376 78 HOH HOH . C 3 HOH A 77 377 80 HOH HOH . C 3 HOH A 78 378 81 HOH HOH . C 3 HOH A 79 379 82 HOH HOH . C 3 HOH A 80 380 83 HOH HOH . C 3 HOH A 81 381 84 HOH HOH . C 3 HOH A 82 382 85 HOH HOH . C 3 HOH A 83 383 86 HOH HOH . C 3 HOH A 84 384 89 HOH HOH . C 3 HOH A 85 385 91 HOH HOH . C 3 HOH A 86 386 92 HOH HOH . C 3 HOH A 87 387 93 HOH HOH . C 3 HOH A 88 388 94 HOH HOH . C 3 HOH A 89 389 95 HOH HOH . C 3 HOH A 90 390 96 HOH HOH . C 3 HOH A 91 391 97 HOH HOH . C 3 HOH A 92 392 98 HOH HOH . C 3 HOH A 93 393 99 HOH HOH . C 3 HOH A 94 394 100 HOH HOH . C 3 HOH A 95 395 101 HOH HOH . C 3 HOH A 96 396 102 HOH HOH . C 3 HOH A 97 397 103 HOH HOH . C 3 HOH A 98 398 104 HOH HOH . C 3 HOH A 99 399 105 HOH HOH . C 3 HOH A 100 400 106 HOH HOH . C 3 HOH A 101 401 107 HOH HOH . C 3 HOH A 102 402 108 HOH HOH . C 3 HOH A 103 403 109 HOH HOH . C 3 HOH A 104 404 110 HOH HOH . C 3 HOH A 105 405 111 HOH HOH . C 3 HOH A 106 406 112 HOH HOH . C 3 HOH A 107 407 113 HOH HOH . C 3 HOH A 108 408 114 HOH HOH . C 3 HOH A 109 409 115 HOH HOH . C 3 HOH A 110 410 116 HOH HOH . C 3 HOH A 111 411 118 HOH HOH . C 3 HOH A 112 412 119 HOH HOH . C 3 HOH A 113 413 120 HOH HOH . C 3 HOH A 114 414 122 HOH HOH . C 3 HOH A 115 415 123 HOH HOH . C 3 HOH A 116 416 124 HOH HOH . C 3 HOH A 117 417 127 HOH HOH . C 3 HOH A 118 418 128 HOH HOH . C 3 HOH A 119 419 130 HOH HOH . C 3 HOH A 120 420 132 HOH HOH . C 3 HOH A 121 421 133 HOH HOH . C 3 HOH A 122 422 134 HOH HOH . C 3 HOH A 123 423 136 HOH HOH . C 3 HOH A 124 424 141 HOH HOH . C 3 HOH A 125 425 148 HOH HOH . C 3 HOH A 126 426 150 HOH HOH . C 3 HOH A 127 427 151 HOH HOH . C 3 HOH A 128 428 152 HOH HOH . C 3 HOH A 129 429 153 HOH HOH . C 3 HOH A 130 430 154 HOH HOH . C 3 HOH A 131 431 155 HOH HOH . C 3 HOH A 132 432 156 HOH HOH . C 3 HOH A 133 433 157 HOH HOH . C 3 HOH A 134 434 161 HOH HOH . C 3 HOH A 135 435 164 HOH HOH . C 3 HOH A 136 436 167 HOH HOH . C 3 HOH A 137 437 169 HOH HOH . C 3 HOH A 138 438 170 HOH HOH . C 3 HOH A 139 439 172 HOH HOH . C 3 HOH A 140 440 175 HOH HOH . C 3 HOH A 141 441 177 HOH HOH . C 3 HOH A 142 442 178 HOH HOH . C 3 HOH A 143 443 179 HOH HOH . C 3 HOH A 144 444 181 HOH HOH . C 3 HOH A 145 445 182 HOH HOH . C 3 HOH A 146 446 184 HOH HOH . C 3 HOH A 147 447 186 HOH HOH . C 3 HOH A 148 448 187 HOH HOH . C 3 HOH A 149 449 188 HOH HOH . C 3 HOH A 150 450 190 HOH HOH . C 3 HOH A 151 451 192 HOH HOH . C 3 HOH A 152 452 193 HOH HOH . C 3 HOH A 153 453 194 HOH HOH . C 3 HOH A 154 454 195 HOH HOH . C 3 HOH A 155 455 196 HOH HOH . C 3 HOH A 156 456 197 HOH HOH . C 3 HOH A 157 457 198 HOH HOH . C 3 HOH A 158 458 199 HOH HOH . C 3 HOH A 159 459 200 HOH HOH . C 3 HOH A 160 460 201 HOH HOH . C 3 HOH A 161 461 202 HOH HOH . C 3 HOH A 162 462 203 HOH HOH . C 3 HOH A 163 463 204 HOH HOH . C 3 HOH A 164 464 205 HOH HOH . C 3 HOH A 165 465 208 HOH HOH . C 3 HOH A 166 466 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . B 2 15.237 28.676 17.6 1 13.87 ? C1 MLA 300 A 1 HETATM 2 O O1A MLA . . . B 2 15.044 28.325 18.865 1 12.7 ? O1A MLA 300 A 1 HETATM 3 O O1B MLA . . . B 2 14.333 28.807 16.826 1 13.07 ? O1B MLA 300 A 1 HETATM 4 C C2 MLA . . . B 2 16.699 28.937 17.279 1 19.5 ? C2 MLA 300 A 1 HETATM 5 C C3 MLA . . . B 2 17.457 27.652 16.927 1 26.84 ? C3 MLA 300 A 1 HETATM 6 O O3A MLA . . . B 2 17.723 27.271 15.659 1 26.19 ? O3A MLA 300 A 1 HETATM 7 O O3B MLA . . . B 2 17.902 26.962 17.794 1 30.55 ? O3B MLA 300 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #