data_1O4T
#
_model_server_result.job_id            hfLNWOj947cpcgwb0qoYzA 
_model_server_result.datetime_utc      '2025-04-08 01:43:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1o4t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":400}' 
#
_entry.id    1O4T 
#
_exptl.entry_id    1O4T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.019 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'OXALATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          123.73 
_cell.angle_gamma         90 
_cell.entry_id            1O4T 
_cell.length_a            89.132 
_cell.length_b            49.738 
_cell.length_c            69.547 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1O4T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 73 A HIS 61 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc2 A NE2 HIS 75 A HIS 63 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc3 A OE2 GLU 80 A GLU 68 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc4 A NE2 HIS 114 A HIS 102 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc5 C MN MN . A MN 300 1_555 D O4 OXL . A OXL 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc6 C MN MN . A MN 300 1_555 D O3 OXL . A OXL 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc7 B NE2 HIS 73 B HIS 61 1_555 E MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc8 B NE2 HIS 75 B HIS 63 1_555 E MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc9 B OE2 GLU 80 B GLU 68 1_555 E MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc10 B NE2 HIS 114 B HIS 102 1_555 E MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc11 E MN MN . B MN 301 1_555 F O3 OXL . B OXL 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc12 E MN MN . B MN 301 1_555 F O4 OXL . B OXL 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
#
_chem_comp.formula           'C2 O4 -2' 
_chem_comp.formula_weight    88.019 
_chem_comp.id                OXL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'OXALATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 OXL sing 218 n n 
C1 O1 OXL doub 219 n n 
C1 O3 OXL sing 220 n n 
C2 O2 OXL doub 221 n n 
C2 O4 OXL sing 222 n n 
#
_atom_sites.entry_id                     1O4T 
_atom_sites.fract_transf_matrix[1][1]    0.011219 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007491 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020105 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017289 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 300 300 MN MN . 
D 3 OXL A 1 400 400 OXL OXL . 
E 2 MN B 1 301 301 MN MN . 
F 3 OXL B 1 401 401 OXL OXL . 
G 4 HOH A 1 401 4 HOH HOH . 
G 4 HOH A 2 402 7 HOH HOH . 
G 4 HOH A 3 403 9 HOH HOH . 
G 4 HOH A 4 404 10 HOH HOH . 
G 4 HOH A 5 405 11 HOH HOH . 
G 4 HOH A 6 406 14 HOH HOH . 
G 4 HOH A 7 407 20 HOH HOH . 
G 4 HOH A 8 408 24 HOH HOH . 
G 4 HOH A 9 409 26 HOH HOH . 
G 4 HOH A 10 410 28 HOH HOH . 
G 4 HOH A 11 411 31 HOH HOH . 
G 4 HOH A 12 412 35 HOH HOH . 
G 4 HOH A 13 413 36 HOH HOH . 
G 4 HOH A 14 414 37 HOH HOH . 
G 4 HOH A 15 415 41 HOH HOH . 
G 4 HOH A 16 416 42 HOH HOH . 
G 4 HOH A 17 417 43 HOH HOH . 
G 4 HOH A 18 418 44 HOH HOH . 
G 4 HOH A 19 419 45 HOH HOH . 
G 4 HOH A 20 420 46 HOH HOH . 
G 4 HOH A 21 421 48 HOH HOH . 
G 4 HOH A 22 422 52 HOH HOH . 
G 4 HOH A 23 423 56 HOH HOH . 
G 4 HOH A 24 424 57 HOH HOH . 
G 4 HOH A 25 425 59 HOH HOH . 
G 4 HOH A 26 426 62 HOH HOH . 
G 4 HOH A 27 427 65 HOH HOH . 
G 4 HOH A 28 428 66 HOH HOH . 
G 4 HOH A 29 429 68 HOH HOH . 
G 4 HOH A 30 430 70 HOH HOH . 
G 4 HOH A 31 431 72 HOH HOH . 
G 4 HOH A 32 432 74 HOH HOH . 
G 4 HOH A 33 433 79 HOH HOH . 
G 4 HOH A 34 434 82 HOH HOH . 
G 4 HOH A 35 435 85 HOH HOH . 
G 4 HOH A 36 436 86 HOH HOH . 
G 4 HOH A 37 437 87 HOH HOH . 
G 4 HOH A 38 438 92 HOH HOH . 
G 4 HOH A 39 439 99 HOH HOH . 
G 4 HOH A 40 440 101 HOH HOH . 
G 4 HOH A 41 441 105 HOH HOH . 
G 4 HOH A 42 442 107 HOH HOH . 
G 4 HOH A 43 443 110 HOH HOH . 
G 4 HOH A 44 444 122 HOH HOH . 
G 4 HOH A 45 445 130 HOH HOH . 
G 4 HOH A 46 446 131 HOH HOH . 
G 4 HOH A 47 447 135 HOH HOH . 
G 4 HOH A 48 448 136 HOH HOH . 
G 4 HOH A 49 449 137 HOH HOH . 
G 4 HOH A 50 450 144 HOH HOH . 
G 4 HOH A 51 451 153 HOH HOH . 
G 4 HOH A 52 452 154 HOH HOH . 
G 4 HOH A 53 453 155 HOH HOH . 
G 4 HOH A 54 454 157 HOH HOH . 
G 4 HOH A 55 455 160 HOH HOH . 
G 4 HOH A 56 456 161 HOH HOH . 
G 4 HOH A 57 457 162 HOH HOH . 
G 4 HOH A 58 458 163 HOH HOH . 
G 4 HOH A 59 459 164 HOH HOH . 
G 4 HOH A 60 460 165 HOH HOH . 
G 4 HOH A 61 461 166 HOH HOH . 
G 4 HOH A 62 462 167 HOH HOH . 
G 4 HOH A 63 463 168 HOH HOH . 
G 4 HOH A 64 464 169 HOH HOH . 
G 4 HOH A 65 465 181 HOH HOH . 
G 4 HOH A 66 466 182 HOH HOH . 
G 4 HOH A 67 467 183 HOH HOH . 
G 4 HOH A 68 468 184 HOH HOH . 
G 4 HOH A 69 469 185 HOH HOH . 
G 4 HOH A 70 470 186 HOH HOH . 
G 4 HOH A 71 471 188 HOH HOH . 
G 4 HOH A 72 472 189 HOH HOH . 
G 4 HOH A 73 473 190 HOH HOH . 
G 4 HOH A 74 474 191 HOH HOH . 
G 4 HOH A 75 475 192 HOH HOH . 
G 4 HOH A 76 476 193 HOH HOH . 
G 4 HOH A 77 477 198 HOH HOH . 
G 4 HOH A 78 478 202 HOH HOH . 
G 4 HOH A 79 479 203 HOH HOH . 
G 4 HOH A 80 480 212 HOH HOH . 
G 4 HOH A 81 481 215 HOH HOH . 
G 4 HOH A 82 482 216 HOH HOH . 
G 4 HOH A 83 483 222 HOH HOH . 
G 4 HOH A 84 484 223 HOH HOH . 
G 4 HOH A 85 485 225 HOH HOH . 
G 4 HOH A 86 486 228 HOH HOH . 
G 4 HOH A 87 487 231 HOH HOH . 
G 4 HOH A 88 488 233 HOH HOH . 
G 4 HOH A 89 489 234 HOH HOH . 
G 4 HOH A 90 490 239 HOH HOH . 
G 4 HOH A 91 491 248 HOH HOH . 
G 4 HOH A 92 492 251 HOH HOH . 
H 4 HOH B 1 402 1 HOH HOH . 
H 4 HOH B 2 403 2 HOH HOH . 
H 4 HOH B 3 404 3 HOH HOH . 
H 4 HOH B 4 405 5 HOH HOH . 
H 4 HOH B 5 406 8 HOH HOH . 
H 4 HOH B 6 407 12 HOH HOH . 
H 4 HOH B 7 408 13 HOH HOH . 
H 4 HOH B 8 409 15 HOH HOH . 
H 4 HOH B 9 410 16 HOH HOH . 
H 4 HOH B 10 411 18 HOH HOH . 
H 4 HOH B 11 412 19 HOH HOH . 
H 4 HOH B 12 413 21 HOH HOH . 
H 4 HOH B 13 414 22 HOH HOH . 
H 4 HOH B 14 415 23 HOH HOH . 
H 4 HOH B 15 416 25 HOH HOH . 
H 4 HOH B 16 417 27 HOH HOH . 
H 4 HOH B 17 418 32 HOH HOH . 
H 4 HOH B 18 419 33 HOH HOH . 
H 4 HOH B 19 420 34 HOH HOH . 
H 4 HOH B 20 421 38 HOH HOH . 
H 4 HOH B 21 422 39 HOH HOH . 
H 4 HOH B 22 423 40 HOH HOH . 
H 4 HOH B 23 424 47 HOH HOH . 
H 4 HOH B 24 425 50 HOH HOH . 
H 4 HOH B 25 426 51 HOH HOH . 
H 4 HOH B 26 427 53 HOH HOH . 
H 4 HOH B 27 428 54 HOH HOH . 
H 4 HOH B 28 429 55 HOH HOH . 
H 4 HOH B 29 430 58 HOH HOH . 
H 4 HOH B 30 431 60 HOH HOH . 
H 4 HOH B 31 432 61 HOH HOH . 
H 4 HOH B 32 433 63 HOH HOH . 
H 4 HOH B 33 434 64 HOH HOH . 
H 4 HOH B 34 435 67 HOH HOH . 
H 4 HOH B 35 436 69 HOH HOH . 
H 4 HOH B 36 437 71 HOH HOH . 
H 4 HOH B 37 438 73 HOH HOH . 
H 4 HOH B 38 439 75 HOH HOH . 
H 4 HOH B 39 440 76 HOH HOH . 
H 4 HOH B 40 441 77 HOH HOH . 
H 4 HOH B 41 442 78 HOH HOH . 
H 4 HOH B 42 443 81 HOH HOH . 
H 4 HOH B 43 444 83 HOH HOH . 
H 4 HOH B 44 445 84 HOH HOH . 
H 4 HOH B 45 446 89 HOH HOH . 
H 4 HOH B 46 447 90 HOH HOH . 
H 4 HOH B 47 448 97 HOH HOH . 
H 4 HOH B 48 449 98 HOH HOH . 
H 4 HOH B 49 450 104 HOH HOH . 
H 4 HOH B 50 451 106 HOH HOH . 
H 4 HOH B 51 452 109 HOH HOH . 
H 4 HOH B 52 453 112 HOH HOH . 
H 4 HOH B 53 454 117 HOH HOH . 
H 4 HOH B 54 455 119 HOH HOH . 
H 4 HOH B 55 456 120 HOH HOH . 
H 4 HOH B 56 457 121 HOH HOH . 
H 4 HOH B 57 458 124 HOH HOH . 
H 4 HOH B 58 459 126 HOH HOH . 
H 4 HOH B 59 460 127 HOH HOH . 
H 4 HOH B 60 461 129 HOH HOH . 
H 4 HOH B 61 462 132 HOH HOH . 
H 4 HOH B 62 463 133 HOH HOH . 
H 4 HOH B 63 464 134 HOH HOH . 
H 4 HOH B 64 465 146 HOH HOH . 
H 4 HOH B 65 466 152 HOH HOH . 
H 4 HOH B 66 467 158 HOH HOH . 
H 4 HOH B 67 468 170 HOH HOH . 
H 4 HOH B 68 469 171 HOH HOH . 
H 4 HOH B 69 470 172 HOH HOH . 
H 4 HOH B 70 471 173 HOH HOH . 
H 4 HOH B 71 472 174 HOH HOH . 
H 4 HOH B 72 473 175 HOH HOH . 
H 4 HOH B 73 474 178 HOH HOH . 
H 4 HOH B 74 475 179 HOH HOH . 
H 4 HOH B 75 476 180 HOH HOH . 
H 4 HOH B 76 477 187 HOH HOH . 
H 4 HOH B 77 478 194 HOH HOH . 
H 4 HOH B 78 479 195 HOH HOH . 
H 4 HOH B 79 480 196 HOH HOH . 
H 4 HOH B 80 481 197 HOH HOH . 
H 4 HOH B 81 482 199 HOH HOH . 
H 4 HOH B 82 483 200 HOH HOH . 
H 4 HOH B 83 484 201 HOH HOH . 
H 4 HOH B 84 485 204 HOH HOH . 
H 4 HOH B 85 486 205 HOH HOH . 
H 4 HOH B 86 487 206 HOH HOH . 
H 4 HOH B 87 488 207 HOH HOH . 
H 4 HOH B 88 489 208 HOH HOH . 
H 4 HOH B 89 490 209 HOH HOH . 
H 4 HOH B 90 491 210 HOH HOH . 
H 4 HOH B 91 492 211 HOH HOH . 
H 4 HOH B 92 493 213 HOH HOH . 
H 4 HOH B 93 494 214 HOH HOH . 
H 4 HOH B 94 495 217 HOH HOH . 
H 4 HOH B 95 496 218 HOH HOH . 
H 4 HOH B 96 497 219 HOH HOH . 
H 4 HOH B 97 498 220 HOH HOH . 
H 4 HOH B 98 499 221 HOH HOH . 
H 4 HOH B 99 500 224 HOH HOH . 
H 4 HOH B 100 501 226 HOH HOH . 
H 4 HOH B 101 502 229 HOH HOH . 
H 4 HOH B 102 503 230 HOH HOH . 
H 4 HOH B 103 504 238 HOH HOH . 
H 4 HOH B 104 505 247 HOH HOH . 
H 4 HOH B 105 506 249 HOH HOH . 
H 4 HOH B 106 507 250 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OXL . . . D 3 19.784 2.5 3.73 1 52.91 ? C1 OXL 400 A 1 
HETATM 2 C C2 OXL . . . D 3 18.956 1.877 2.693 1 53.27 ? C2 OXL 400 A 1 
HETATM 3 O O1 OXL . . . D 3 20.53 1.65 4.466 1 54.56 ? O1 OXL 400 A 1 
HETATM 4 O O2 OXL . . . D 3 19.199 0.579 2.434 1 56.29 ? O2 OXL 400 A 1 
HETATM 5 O O3 OXL . . . D 3 19.773 3.731 3.94 1 47.15 ? O3 OXL 400 A 1 
HETATM 6 O O4 OXL . . . D 3 18.051 2.487 2.115 1 46.13 ? O4 OXL 400 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           240 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#