data_1O5I # _model_server_result.job_id 1SUKnFMr6o6dyYZHh-jLiA _model_server_result.datetime_utc '2024-11-05 01:27:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o5i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":256}' # _entry.id 1O5I # _exptl.entry_id 1O5I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1O5I _cell.length_a 63.515 _cell.length_b 117.12 _cell.length_c 140.847 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O5I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 49 A CYS 37 1_555 A SG CYS 66 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? disulf ? disulf2 B SG CYS 49 B CYS 37 1_555 B SG CYS 66 B CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? disulf ? disulf3 C SG CYS 49 C CYS 37 1_555 C SG CYS 66 C CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf4 D SG CYS 49 D CYS 37 1_555 D SG CYS 66 D CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1O5I _atom_sites.fract_transf_matrix[1][1] 0.015744 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008538 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0071 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD B 1 256 256 NAD NAD . F 3 HOH A 1 238 10 HOH HOH . F 3 HOH A 2 239 20 HOH HOH . F 3 HOH A 3 240 26 HOH HOH . F 3 HOH A 4 241 28 HOH HOH . F 3 HOH A 5 242 29 HOH HOH . F 3 HOH A 6 243 31 HOH HOH . F 3 HOH A 7 244 32 HOH HOH . F 3 HOH A 8 245 36 HOH HOH . F 3 HOH A 9 246 38 HOH HOH . F 3 HOH A 10 247 43 HOH HOH . F 3 HOH A 11 248 45 HOH HOH . F 3 HOH A 12 249 47 HOH HOH . F 3 HOH A 13 250 48 HOH HOH . F 3 HOH A 14 251 55 HOH HOH . F 3 HOH A 15 252 58 HOH HOH . F 3 HOH A 16 253 70 HOH HOH . F 3 HOH A 17 254 71 HOH HOH . F 3 HOH A 18 255 77 HOH HOH . F 3 HOH A 19 256 78 HOH HOH . F 3 HOH A 20 257 82 HOH HOH . F 3 HOH A 21 258 92 HOH HOH . F 3 HOH A 22 259 93 HOH HOH . F 3 HOH A 23 260 94 HOH HOH . F 3 HOH A 24 261 95 HOH HOH . F 3 HOH A 25 262 100 HOH HOH . F 3 HOH A 26 263 105 HOH HOH . F 3 HOH A 27 264 107 HOH HOH . F 3 HOH A 28 265 116 HOH HOH . F 3 HOH A 29 266 117 HOH HOH . F 3 HOH A 30 267 125 HOH HOH . F 3 HOH A 31 268 128 HOH HOH . F 3 HOH A 32 269 129 HOH HOH . F 3 HOH A 33 270 130 HOH HOH . F 3 HOH A 34 271 131 HOH HOH . F 3 HOH A 35 272 134 HOH HOH . F 3 HOH A 36 273 135 HOH HOH . F 3 HOH A 37 274 136 HOH HOH . F 3 HOH A 38 275 137 HOH HOH . F 3 HOH A 39 276 138 HOH HOH . F 3 HOH A 40 277 140 HOH HOH . F 3 HOH A 41 278 141 HOH HOH . F 3 HOH A 42 279 142 HOH HOH . F 3 HOH A 43 280 144 HOH HOH . F 3 HOH A 44 281 145 HOH HOH . F 3 HOH A 45 282 146 HOH HOH . F 3 HOH A 46 283 154 HOH HOH . F 3 HOH A 47 284 166 HOH HOH . F 3 HOH A 48 285 175 HOH HOH . F 3 HOH A 49 286 177 HOH HOH . G 3 HOH B 1 257 1 HOH HOH . G 3 HOH B 2 258 5 HOH HOH . G 3 HOH B 3 259 11 HOH HOH . G 3 HOH B 4 260 13 HOH HOH . G 3 HOH B 5 261 15 HOH HOH . G 3 HOH B 6 262 17 HOH HOH . G 3 HOH B 7 263 18 HOH HOH . G 3 HOH B 8 264 23 HOH HOH . G 3 HOH B 9 265 24 HOH HOH . G 3 HOH B 10 266 27 HOH HOH . G 3 HOH B 11 267 33 HOH HOH . G 3 HOH B 12 268 34 HOH HOH . G 3 HOH B 13 269 46 HOH HOH . G 3 HOH B 14 270 49 HOH HOH . G 3 HOH B 15 271 50 HOH HOH . G 3 HOH B 16 272 51 HOH HOH . G 3 HOH B 17 273 61 HOH HOH . G 3 HOH B 18 274 72 HOH HOH . G 3 HOH B 19 275 75 HOH HOH . G 3 HOH B 20 276 79 HOH HOH . G 3 HOH B 21 277 87 HOH HOH . G 3 HOH B 22 278 104 HOH HOH . G 3 HOH B 23 279 113 HOH HOH . G 3 HOH B 24 280 114 HOH HOH . G 3 HOH B 25 281 115 HOH HOH . G 3 HOH B 26 282 147 HOH HOH . G 3 HOH B 27 283 148 HOH HOH . G 3 HOH B 28 284 149 HOH HOH . G 3 HOH B 29 285 150 HOH HOH . G 3 HOH B 30 286 152 HOH HOH . G 3 HOH B 31 287 153 HOH HOH . G 3 HOH B 32 288 155 HOH HOH . G 3 HOH B 33 289 162 HOH HOH . G 3 HOH B 34 290 167 HOH HOH . G 3 HOH B 35 291 168 HOH HOH . G 3 HOH B 36 292 178 HOH HOH . G 3 HOH B 37 293 179 HOH HOH . G 3 HOH B 38 294 180 HOH HOH . G 3 HOH B 39 295 182 HOH HOH . H 3 HOH C 1 238 9 HOH HOH . H 3 HOH C 2 239 12 HOH HOH . H 3 HOH C 3 240 14 HOH HOH . H 3 HOH C 4 241 25 HOH HOH . H 3 HOH C 5 242 37 HOH HOH . H 3 HOH C 6 243 54 HOH HOH . H 3 HOH C 7 244 57 HOH HOH . H 3 HOH C 8 245 62 HOH HOH . H 3 HOH C 9 246 64 HOH HOH . H 3 HOH C 10 247 65 HOH HOH . H 3 HOH C 11 248 67 HOH HOH . H 3 HOH C 12 249 76 HOH HOH . H 3 HOH C 13 250 80 HOH HOH . H 3 HOH C 14 251 88 HOH HOH . H 3 HOH C 15 252 90 HOH HOH . H 3 HOH C 16 253 97 HOH HOH . H 3 HOH C 17 254 108 HOH HOH . H 3 HOH C 18 255 118 HOH HOH . H 3 HOH C 19 256 121 HOH HOH . H 3 HOH C 20 257 124 HOH HOH . H 3 HOH C 21 258 126 HOH HOH . H 3 HOH C 22 259 127 HOH HOH . H 3 HOH C 23 260 132 HOH HOH . H 3 HOH C 24 261 139 HOH HOH . H 3 HOH C 25 262 156 HOH HOH . H 3 HOH C 26 263 160 HOH HOH . H 3 HOH C 27 264 161 HOH HOH . H 3 HOH C 28 265 169 HOH HOH . H 3 HOH C 29 266 171 HOH HOH . H 3 HOH C 30 267 173 HOH HOH . H 3 HOH C 31 268 181 HOH HOH . I 3 HOH D 1 238 2 HOH HOH . I 3 HOH D 2 239 4 HOH HOH . I 3 HOH D 3 240 6 HOH HOH . I 3 HOH D 4 241 8 HOH HOH . I 3 HOH D 5 242 16 HOH HOH . I 3 HOH D 6 243 21 HOH HOH . I 3 HOH D 7 244 22 HOH HOH . I 3 HOH D 8 245 35 HOH HOH . I 3 HOH D 9 246 42 HOH HOH . I 3 HOH D 10 247 52 HOH HOH . I 3 HOH D 11 248 53 HOH HOH . I 3 HOH D 12 249 56 HOH HOH . I 3 HOH D 13 250 59 HOH HOH . I 3 HOH D 14 251 60 HOH HOH . I 3 HOH D 15 252 63 HOH HOH . I 3 HOH D 16 253 66 HOH HOH . I 3 HOH D 17 254 68 HOH HOH . I 3 HOH D 18 255 69 HOH HOH . I 3 HOH D 19 256 73 HOH HOH . I 3 HOH D 20 257 74 HOH HOH . I 3 HOH D 21 258 83 HOH HOH . I 3 HOH D 22 259 86 HOH HOH . I 3 HOH D 23 260 89 HOH HOH . I 3 HOH D 24 261 91 HOH HOH . I 3 HOH D 25 262 99 HOH HOH . I 3 HOH D 26 263 101 HOH HOH . I 3 HOH D 27 264 102 HOH HOH . I 3 HOH D 28 265 103 HOH HOH . I 3 HOH D 29 266 106 HOH HOH . I 3 HOH D 30 267 110 HOH HOH . I 3 HOH D 31 268 111 HOH HOH . I 3 HOH D 32 269 119 HOH HOH . I 3 HOH D 33 270 123 HOH HOH . I 3 HOH D 34 271 157 HOH HOH . I 3 HOH D 35 272 158 HOH HOH . I 3 HOH D 36 273 159 HOH HOH . I 3 HOH D 37 274 164 HOH HOH . I 3 HOH D 38 275 165 HOH HOH . I 3 HOH D 39 276 170 HOH HOH . I 3 HOH D 40 277 172 HOH HOH . I 3 HOH D 41 278 174 HOH HOH . I 3 HOH D 42 279 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 64.979 23.638 52.97 0.5 17.13 ? PA NAD 256 B 1 HETATM 2 O O1A NAD . . . E 2 66.016 22.925 52.202 0.5 16.57 ? O1A NAD 256 B 1 HETATM 3 O O2A NAD . . . E 2 65.683 24.717 53.707 0.5 17.05 ? O2A NAD 256 B 1 HETATM 4 O O5B NAD . . . E 2 64.263 22.467 53.831 0.5 15.45 ? O5B NAD 256 B 1 HETATM 5 C C5B NAD . . . E 2 63.669 21.374 53.176 0.5 15.2 ? C5B NAD 256 B 1 HETATM 6 C C4B NAD . . . E 2 64.136 19.983 53.626 0.5 15.18 ? C4B NAD 256 B 1 HETATM 7 O O4B NAD . . . E 2 63.899 19.087 52.566 0.5 16.03 ? O4B NAD 256 B 1 HETATM 8 C C3B NAD . . . E 2 65.589 19.754 53.949 0.5 15.12 ? C3B NAD 256 B 1 HETATM 9 O O3B NAD . . . E 2 65.587 19.342 55.277 0.5 15.8 ? O3B NAD 256 B 1 HETATM 10 C C2B NAD . . . E 2 66.107 18.631 53.057 0.5 15.88 ? C2B NAD 256 B 1 HETATM 11 O O2B NAD . . . E 2 66.894 17.64 53.7 0.5 15.36 ? O2B NAD 256 B 1 HETATM 12 C C1B NAD . . . E 2 64.814 18.026 52.587 0.5 16.72 ? C1B NAD 256 B 1 HETATM 13 N N9A NAD . . . E 2 64.831 17.461 51.24 0.5 17.96 ? N9A NAD 256 B 1 HETATM 14 C C8A NAD . . . E 2 65.469 17.931 50.113 0.5 18.9 ? C8A NAD 256 B 1 HETATM 15 N N7A NAD . . . E 2 65.186 17.094 49.075 0.5 19.13 ? N7A NAD 256 B 1 HETATM 16 C C5A NAD . . . E 2 64.363 16.121 49.533 0.5 19.01 ? C5A NAD 256 B 1 HETATM 17 C C6A NAD . . . E 2 63.786 15.024 48.925 0.5 18.42 ? C6A NAD 256 B 1 HETATM 18 N N6A NAD . . . E 2 64.173 14.7 47.702 0.5 18.16 ? N6A NAD 256 B 1 HETATM 19 N N1A NAD . . . E 2 62.984 14.175 49.671 0.5 18.24 ? N1A NAD 256 B 1 HETATM 20 C C2A NAD . . . E 2 62.76 14.404 51.016 0.5 17.45 ? C2A NAD 256 B 1 HETATM 21 N N3A NAD . . . E 2 63.337 15.499 51.608 0.5 17.7 ? N3A NAD 256 B 1 HETATM 22 C C4A NAD . . . E 2 64.129 16.339 50.888 0.5 18.63 ? C4A NAD 256 B 1 HETATM 23 O O3 NAD . . . E 2 63.811 24.275 52.041 0.5 18.11 ? O3 NAD 256 B 1 HETATM 24 P PN NAD . . . E 2 62.246 24.563 52.415 0.5 19.29 ? PN NAD 256 B 1 HETATM 25 O O1N NAD . . . E 2 62.122 26.002 52.744 0.5 16.03 ? O1N NAD 256 B 1 HETATM 26 O O2N NAD . . . E 2 61.659 23.566 53.359 0.5 16.6 ? O2N NAD 256 B 1 HETATM 27 O O5D NAD . . . E 2 61.608 24.339 50.94 0.5 18.57 ? O5D NAD 256 B 1 HETATM 28 C C5D NAD . . . E 2 61.372 25.477 50.142 0.5 19.05 ? C5D NAD 256 B 1 HETATM 29 C C4D NAD . . . E 2 60.654 25.113 48.849 0.5 19.41 ? C4D NAD 256 B 1 HETATM 30 O O4D NAD . . . E 2 59.723 26.13 48.511 0.5 19.57 ? O4D NAD 256 B 1 HETATM 31 C C3D NAD . . . E 2 61.675 25.067 47.725 0.5 20.05 ? C3D NAD 256 B 1 HETATM 32 O O3D NAD . . . E 2 61.462 23.944 46.898 0.5 20.09 ? O3D NAD 256 B 1 HETATM 33 C C2D NAD . . . E 2 61.517 26.399 47.001 0.5 20.53 ? C2D NAD 256 B 1 HETATM 34 O O2D NAD . . . E 2 61.393 26.228 45.594 0.5 19.53 ? O2D NAD 256 B 1 HETATM 35 C C1D NAD . . . E 2 60.3 27.087 47.639 0.5 19.62 ? C1D NAD 256 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #