data_1O5W # _model_server_result.job_id YmR8q-UcX1NfqV8kQJWdbQ _model_server_result.datetime_utc '2024-11-23 13:54:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o5w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":3652}' # _entry.id 1O5W # _exptl.entry_id 1O5W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1O5W _cell.length_a 157.56 _cell.length_b 157.56 _cell.length_c 257.84 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O5W _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 414 A CYS 406 1_555 E C8M FAD . A FAD 652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? covale ? covale2 E N5 FAD . A FAD 652 1_555 F C16 MLG . A MLG 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.541 ? covale ? covale3 B SG CYS 414 B CYS 1406 1_555 G C8M FAD . B FAD 1652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? covale ? covale4 G N5 FAD . B FAD 1652 1_555 H C16 MLG . B MLG 1709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale5 C SG CYS 414 C CYS 2406 1_555 I C8M FAD . C FAD 2652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.734 ? covale ? covale6 I N5 FAD . C FAD 2652 1_555 J C16 MLG . C MLG 2709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? covale ? covale7 D SG CYS 414 D CYS 3406 1_555 K C8M FAD . D FAD 3652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale8 K N5 FAD . D FAD 3652 1_555 L C16 MLG . D MLG 3709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.528 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 1O5W _atom_sites.fract_transf_matrix[1][1] 0.006347 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006347 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 652 652 FAD FAD . F 3 MLG A 1 709 709 MLG MLG . G 2 FAD B 1 1652 1652 FAD FAD . H 3 MLG B 1 1709 1709 MLG MLG . I 2 FAD C 1 2652 2652 FAD FAD . J 3 MLG C 1 2709 2709 MLG MLG . K 2 FAD D 1 3652 3652 FAD FAD . L 3 MLG D 1 3709 3709 MLG MLG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . K 2 57.66 58.084 181.989 1 56.37 ? PA FAD 3652 D 1 HETATM 2 O O1A FAD . . . K 2 57.369 59.279 181.147 1 56.33 ? O1A FAD 3652 D 1 HETATM 3 O O2A FAD . . . K 2 58.096 58.348 183.396 1 79.17 ? O2A FAD 3652 D 1 HETATM 4 O O5B FAD . . . K 2 58.839 57.325 181.299 1 64.31 ? O5B FAD 3652 D 1 HETATM 5 C C5B FAD . . . K 2 58.872 56.869 179.956 1 71.63 ? C5B FAD 3652 D 1 HETATM 6 C C4B FAD . . . K 2 60.335 56.562 179.711 1 35.45 ? C4B FAD 3652 D 1 HETATM 7 O O4B FAD . . . K 2 60.55 56.076 178.356 1 72.96 ? O4B FAD 3652 D 1 HETATM 8 C C3B FAD . . . K 2 61.269 57.798 179.839 1 82.83 ? C3B FAD 3652 D 1 HETATM 9 O O3B FAD . . . K 2 62.431 57.496 180.644 1 74.29 ? O3B FAD 3652 D 1 HETATM 10 C C2B FAD . . . K 2 61.506 58.17 178.44 1 56.23 ? C2B FAD 3652 D 1 HETATM 11 O O2B FAD . . . K 2 62.601 58.954 178.094 1 82.72 ? O2B FAD 3652 D 1 HETATM 12 C C1B FAD . . . K 2 61.551 56.84 177.675 1 61.47 ? C1B FAD 3652 D 1 HETATM 13 N N9A FAD . . . K 2 61.216 56.852 176.278 1 85.27 ? N9A FAD 3652 D 1 HETATM 14 C C8A FAD . . . K 2 60.28 57.633 175.544 1 93.93 ? C8A FAD 3652 D 1 HETATM 15 N N7A FAD . . . K 2 60.225 57.39 174.269 1 87.05 ? N7A FAD 3652 D 1 HETATM 16 C C5A FAD . . . K 2 61.163 56.389 174.08 1 85.96 ? C5A FAD 3652 D 1 HETATM 17 C C6A FAD . . . K 2 61.595 55.677 172.951 1 91.64 ? C6A FAD 3652 D 1 HETATM 18 N N6A FAD . . . K 2 61.062 55.91 171.753 1 123.14 ? N6A FAD 3652 D 1 HETATM 19 N N1A FAD . . . K 2 62.587 54.719 173.083 1 45.18 ? N1A FAD 3652 D 1 HETATM 20 C C2A FAD . . . K 2 63.133 54.457 174.306 1 148.01 ? C2A FAD 3652 D 1 HETATM 21 N N3A FAD . . . K 2 62.743 55.11 175.499 1 57.05 ? N3A FAD 3652 D 1 HETATM 22 C C4A FAD . . . K 2 61.73 56.081 175.23 1 90.75 ? C4A FAD 3652 D 1 HETATM 23 N N1 FAD . . . K 2 52.974 61.639 189.907 1 84.92 ? N1 FAD 3652 D 1 HETATM 24 C C2 FAD . . . K 2 52.716 61.297 191.227 1 111.11 ? C2 FAD 3652 D 1 HETATM 25 O O2 FAD . . . K 2 52.352 60.163 191.585 1 115.35 ? O2 FAD 3652 D 1 HETATM 26 N N3 FAD . . . K 2 52.907 62.273 192.185 1 102.38 ? N3 FAD 3652 D 1 HETATM 27 C C4 FAD . . . K 2 53.319 63.595 191.933 1 62.08 ? C4 FAD 3652 D 1 HETATM 28 O O4 FAD . . . K 2 53.481 64.402 192.892 1 83.99 ? O4 FAD 3652 D 1 HETATM 29 C C4X FAD . . . K 2 53.542 63.929 190.611 1 63.01 ? C4X FAD 3652 D 1 HETATM 30 N N5 FAD . . . K 2 53.96 65.285 190.333 1 91.19 ? N5 FAD 3652 D 1 HETATM 31 C C5X FAD . . . K 2 54.358 65.58 188.995 1 45.19 ? C5X FAD 3652 D 1 HETATM 32 C C6 FAD . . . K 2 54.929 66.841 188.684 1 119.5 ? C6 FAD 3652 D 1 HETATM 33 C C7 FAD . . . K 2 55.532 67.147 187.454 1 77.34 ? C7 FAD 3652 D 1 HETATM 34 C C7M FAD . . . K 2 56.179 68.518 187.23 1 77.61 ? C7M FAD 3652 D 1 HETATM 35 C C8 FAD . . . K 2 55.579 66.105 186.491 1 64.08 ? C8 FAD 3652 D 1 HETATM 36 C C8M FAD . . . K 2 56.357 66.282 185.239 1 63.99 ? C8M FAD 3652 D 1 HETATM 37 C C9 FAD . . . K 2 54.978 64.86 186.683 1 51.84 ? C9 FAD 3652 D 1 HETATM 38 C C9A FAD . . . K 2 54.324 64.569 187.909 1 74.8 ? C9A FAD 3652 D 1 HETATM 39 N N10 FAD . . . K 2 53.759 63.245 188.304 1 40.7 ? N10 FAD 3652 D 1 HETATM 40 C C10 FAD . . . K 2 53.395 62.929 189.604 1 52.96 ? C10 FAD 3652 D 1 HETATM 41 C C1' FAD . . . K 2 53.643 62.265 187.26 1 97.18 ? C1' FAD 3652 D 1 HETATM 42 C C2' FAD . . . K 2 54.611 61.12 187.171 1 65.23 ? C2' FAD 3652 D 1 HETATM 43 O O2' FAD . . . K 2 55.915 61.742 187.011 1 81.07 ? O2' FAD 3652 D 1 HETATM 44 C C3' FAD . . . K 2 54.411 60.242 185.98 1 82.1 ? C3' FAD 3652 D 1 HETATM 45 O O3' FAD . . . K 2 53.074 59.784 185.924 1 75.29 ? O3' FAD 3652 D 1 HETATM 46 C C4' FAD . . . K 2 55.246 58.979 185.881 1 44.89 ? C4' FAD 3652 D 1 HETATM 47 O O4' FAD . . . K 2 56.655 59.339 185.946 1 103.38 ? O4' FAD 3652 D 1 HETATM 48 C C5' FAD . . . K 2 55.058 58.246 184.623 1 60.79 ? C5' FAD 3652 D 1 HETATM 49 O O5' FAD . . . K 2 55.898 57.1 184.569 1 95.72 ? O5' FAD 3652 D 1 HETATM 50 P P FAD . . . K 2 55.921 56.192 183.314 1 51.5 ? P FAD 3652 D 1 HETATM 51 O O1P FAD . . . K 2 56.922 55.161 183.582 1 110.89 ? O1P FAD 3652 D 1 HETATM 52 O O2P FAD . . . K 2 54.543 55.733 183.001 1 129.54 ? O2P FAD 3652 D 1 HETATM 53 O O3P FAD . . . K 2 56.375 57.198 182.15 1 49.96 ? O3P FAD 3652 D 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #