data_1O95
#
_model_server_result.job_id            czt4OppZFxo26wU5gt2wRA 
_model_server_result.datetime_utc      '2024-11-22 09:58:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1o95 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1236}' 
#
_entry.id    1O95 
#
_exptl.entry_id    1O95 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.35 
_cell.angle_gamma         90 
_cell.entry_id            1O95 
_cell.length_a            102.5 
_cell.length_b            116.513 
_cell.length_c            138.706 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1O95 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 M N N 
? 7 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 30 A CYS 30 1_555 G C6 FMN . A FMN 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? 
covale ? covale2 B SG CYS 30 B CYS 30 1_555 J C6 FMN . B FMN 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? 
metalc ? metalc1 A SG CYS 345 A CYS 345 1_555 I FE1 SF4 . A SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc2 A SG CYS 348 A CYS 348 1_555 I FE4 SF4 . A SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.726 ? 
metalc ? metalc3 A SG CYS 351 A CYS 351 1_555 I FE2 SF4 . A SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc4 A SG CYS 364 A CYS 364 1_555 I FE3 SF4 . A SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc5 B SG CYS 345 B CYS 345 1_555 L FE3 SF4 . B SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc6 B SG CYS 348 B CYS 348 1_555 L FE1 SF4 . B SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? 
metalc ? metalc7 B SG CYS 351 B CYS 351 1_555 L FE2 SF4 . B SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc8 B SG CYS 364 B CYS 364 1_555 L FE4 SF4 . B SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 57 n n 
P O2P AMP sing 58 n n 
P O3P AMP sing 59 n n 
P O5' AMP sing 60 n n 
O2P HOP2 AMP sing 61 n n 
O3P HOP3 AMP sing 62 n n 
O5' C5' AMP sing 63 n n 
C5' C4' AMP sing 64 n n 
C5' "H5'1" AMP sing 65 n n 
C5' "H5'2" AMP sing 66 n n 
C4' O4' AMP sing 67 n n 
C4' C3' AMP sing 68 n n 
C4' H4' AMP sing 69 n n 
O4' C1' AMP sing 70 n n 
C3' O3' AMP sing 71 n n 
C3' C2' AMP sing 72 n n 
C3' H3' AMP sing 73 n n 
O3' HO3' AMP sing 74 n n 
C2' O2' AMP sing 75 n n 
C2' C1' AMP sing 76 n n 
C2' H2' AMP sing 77 n n 
O2' HO2' AMP sing 78 n n 
C1' N9 AMP sing 79 n n 
C1' H1' AMP sing 80 n n 
N9 C8 AMP sing 81 n y 
N9 C4 AMP sing 82 n y 
C8 N7 AMP doub 83 n y 
C8 H8 AMP sing 84 n n 
N7 C5 AMP sing 85 n y 
C5 C6 AMP sing 86 n y 
C5 C4 AMP doub 87 n y 
C6 N6 AMP sing 88 n n 
C6 N1 AMP doub 89 n y 
N6 HN61 AMP sing 90 n n 
N6 HN62 AMP sing 91 n n 
N1 C2 AMP sing 92 n y 
C2 N3 AMP doub 93 n y 
C2 H2 AMP sing 94 n n 
N3 C4 AMP sing 95 n y 
#
_atom_sites.entry_id                     1O95 
_atom_sites.fract_transf_matrix[1][1]    0.009756 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000914 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008583 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007241 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 FMN A 1 1730 1730 FMN FMN . 
H 5 ADP A 1 1731 1731 ADP ADP . 
I 6 SF4 A 1 1732 1732 SF4 SF4 . 
J 4 FMN B 1 1730 1730 FMN FMN . 
K 5 ADP B 1 1731 1731 ADP ADP . 
L 6 SF4 B 1 1732 1732 SF4 SF4 . 
M 7 AMP C 1 1236 1236 AMP AMP . 
N 7 AMP E 1 1237 1237 AMP AMP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . M 7 -9.386 -0.459 -9.417 1 51.54 ? P AMP 1236 C 1 
HETATM 2 O O1P AMP . . . M 7 -9.726 1.02 -9.254 1 56.34 ? O1P AMP 1236 C 1 
HETATM 3 O O2P AMP . . . M 7 -10.358 -1.101 -10.346 1 51.03 ? O2P AMP 1236 C 1 
HETATM 4 O O3P AMP . . . M 7 -9.432 -1.072 -8.056 1 50.57 ? O3P AMP 1236 C 1 
HETATM 5 O O5' AMP . . . M 7 -7.841 -0.263 -9.809 1 49.9 ? O5' AMP 1236 C 1 
HETATM 6 C C5' AMP . . . M 7 -7.148 -1.09 -10.702 1 46.45 ? C5' AMP 1236 C 1 
HETATM 7 C C4' AMP . . . M 7 -6.259 -0.322 -11.641 1 42.01 ? C4' AMP 1236 C 1 
HETATM 8 O O4' AMP . . . M 7 -7.198 0.486 -12.215 1 43.98 ? O4' AMP 1236 C 1 
HETATM 9 C C3' AMP . . . M 7 -5.265 0.702 -11.101 1 39.28 ? C3' AMP 1236 C 1 
HETATM 10 O O3' AMP . . . M 7 -3.982 0.255 -11.081 1 34.75 ? O3' AMP 1236 C 1 
HETATM 11 C C2' AMP . . . M 7 -4.987 1.379 -12.36 1 41.03 ? C2' AMP 1236 C 1 
HETATM 12 O O2' AMP . . . M 7 -4.402 0.354 -13.131 1 37.58 ? O2' AMP 1236 C 1 
HETATM 13 C C1' AMP . . . M 7 -6.401 1.468 -12.813 1 46.35 ? C1' AMP 1236 C 1 
HETATM 14 N N9 AMP . . . M 7 -7.011 2.771 -12.585 1 51 ? N9 AMP 1236 C 1 
HETATM 15 C C8 AMP . . . M 7 -8.082 3.112 -11.767 1 51.02 ? C8 AMP 1236 C 1 
HETATM 16 N N7 AMP . . . M 7 -8.34 4.428 -11.969 1 52.84 ? N7 AMP 1236 C 1 
HETATM 17 C C5 AMP . . . M 7 -7.433 4.868 -12.911 1 55.29 ? C5 AMP 1236 C 1 
HETATM 18 C C6 AMP . . . M 7 -7.212 6.112 -13.483 1 57.38 ? C6 AMP 1236 C 1 
HETATM 19 N N6 AMP . . . M 7 -8.05 7.058 -13.05 1 60.82 ? N6 AMP 1236 C 1 
HETATM 20 N N1 AMP . . . M 7 -6.176 6.308 -14.436 1 55.26 ? N1 AMP 1236 C 1 
HETATM 21 C C2 AMP . . . M 7 -5.365 5.244 -14.842 1 51.65 ? C2 AMP 1236 C 1 
HETATM 22 N N3 AMP . . . M 7 -5.553 3.992 -14.275 1 49.78 ? N3 AMP 1236 C 1 
HETATM 23 C C4 AMP . . . M 7 -6.572 3.84 -13.33 1 52.96 ? C4 AMP 1236 C 1 
#
_model_server_stats.io_time_ms              93 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    64 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           23 
#