data_1O95 # _model_server_result.job_id hwUGSZ_FevAzFIKVPKbJKw _model_server_result.datetime_utc '2024-11-25 14:11:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o95 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1730}' # _entry.id 1O95 # _exptl.entry_id 1O95 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.35 _cell.angle_gamma 90 _cell.entry_id 1O95 _cell.length_a 102.5 _cell.length_b 116.513 _cell.length_c 138.706 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O95 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 30 A CYS 30 1_555 G C6 FMN . A FMN 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? covale ? covale2 B SG CYS 30 B CYS 30 1_555 J C6 FMN . B FMN 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc1 A SG CYS 345 A CYS 345 1_555 I FE1 SF4 . A SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc2 A SG CYS 348 A CYS 348 1_555 I FE4 SF4 . A SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.726 ? metalc ? metalc3 A SG CYS 351 A CYS 351 1_555 I FE2 SF4 . A SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc4 A SG CYS 364 A CYS 364 1_555 I FE3 SF4 . A SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc5 B SG CYS 345 B CYS 345 1_555 L FE3 SF4 . B SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc6 B SG CYS 348 B CYS 348 1_555 L FE1 SF4 . B SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc7 B SG CYS 351 B CYS 351 1_555 L FE2 SF4 . B SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc8 B SG CYS 364 B CYS 364 1_555 L FE4 SF4 . B SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 166 n n N1 C10 FMN doub 167 n n C2 O2 FMN doub 168 n n C2 N3 FMN sing 169 n n N3 C4 FMN sing 170 n n N3 HN3 FMN sing 171 n n C4 O4 FMN doub 172 n n C4 C4A FMN sing 173 n n C4A N5 FMN doub 174 n n C4A C10 FMN sing 175 n n N5 C5A FMN sing 176 n n C5A C6 FMN doub 177 n y C5A C9A FMN sing 178 n y C6 C7 FMN sing 179 n y C6 H6 FMN sing 180 n n C7 C7M FMN sing 181 n n C7 C8 FMN doub 182 n y C7M HM71 FMN sing 183 n n C7M HM72 FMN sing 184 n n C7M HM73 FMN sing 185 n n C8 C8M FMN sing 186 n n C8 C9 FMN sing 187 n y C8M HM81 FMN sing 188 n n C8M HM82 FMN sing 189 n n C8M HM83 FMN sing 190 n n C9 C9A FMN doub 191 n y C9 H9 FMN sing 192 n n C9A N10 FMN sing 193 n n N10 C10 FMN sing 194 n n N10 C1' FMN sing 195 n n C1' C2' FMN sing 196 n n C1' "H1'1" FMN sing 197 n n C1' "H1'2" FMN sing 198 n n C2' O2' FMN sing 199 n n C2' C3' FMN sing 200 n n C2' H2' FMN sing 201 n n O2' HO2' FMN sing 202 n n C3' O3' FMN sing 203 n n C3' C4' FMN sing 204 n n C3' H3' FMN sing 205 n n O3' HO3' FMN sing 206 n n C4' O4' FMN sing 207 n n C4' C5' FMN sing 208 n n C4' H4' FMN sing 209 n n O4' HO4' FMN sing 210 n n C5' O5' FMN sing 211 n n C5' "H5'1" FMN sing 212 n n C5' "H5'2" FMN sing 213 n n O5' P FMN sing 214 n n P O1P FMN doub 215 n n P O2P FMN sing 216 n n P O3P FMN sing 217 n n O2P HOP2 FMN sing 218 n n O3P HOP3 FMN sing 219 n n # _atom_sites.entry_id 1O95 _atom_sites.fract_transf_matrix[1][1] 0.009756 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000914 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 FMN A 1 1730 1730 FMN FMN . H 5 ADP A 1 1731 1731 ADP ADP . I 6 SF4 A 1 1732 1732 SF4 SF4 . J 4 FMN B 1 1730 1730 FMN FMN . K 5 ADP B 1 1731 1731 ADP ADP . L 6 SF4 B 1 1732 1732 SF4 SF4 . M 7 AMP C 1 1236 1236 AMP AMP . N 7 AMP E 1 1237 1237 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . G 4 54.443 3.19 31.943 1 59.25 ? N1 FMN 1730 A 1 HETATM 2 C C2 FMN . . . G 4 53.981 3.869 30.805 1 61.65 ? C2 FMN 1730 A 1 HETATM 3 O O2 FMN . . . G 4 54.676 3.746 29.775 1 60.66 ? O2 FMN 1730 A 1 HETATM 4 N N3 FMN . . . G 4 52.752 4.634 30.837 1 61.82 ? N3 FMN 1730 A 1 HETATM 5 C C4 FMN . . . G 4 51.951 4.779 31.996 1 57.48 ? C4 FMN 1730 A 1 HETATM 6 O O4 FMN . . . G 4 51.572 5.953 32.174 1 50.85 ? O4 FMN 1730 A 1 HETATM 7 C C4A FMN . . . G 4 52.415 4.036 33.139 1 57.37 ? C4A FMN 1730 A 1 HETATM 8 N N5 FMN . . . G 4 51.714 4.064 34.351 1 54.71 ? N5 FMN 1730 A 1 HETATM 9 C C5A FMN . . . G 4 52.242 3.361 35.454 1 51.49 ? C5A FMN 1730 A 1 HETATM 10 C C6 FMN . . . G 4 51.549 3.414 36.648 1 48.02 ? C6 FMN 1730 A 1 HETATM 11 C C7 FMN . . . G 4 52.023 2.776 37.761 1 46.04 ? C7 FMN 1730 A 1 HETATM 12 C C7M FMN . . . G 4 51.755 3.586 39.001 1 44.48 ? C7M FMN 1730 A 1 HETATM 13 C C8 FMN . . . G 4 53.217 2.062 37.648 1 45.74 ? C8 FMN 1730 A 1 HETATM 14 C C8M FMN . . . G 4 54.248 2.353 38.669 1 46.78 ? C8M FMN 1730 A 1 HETATM 15 C C9 FMN . . . G 4 53.908 1.98 36.478 1 45.67 ? C9 FMN 1730 A 1 HETATM 16 C C9A FMN . . . G 4 53.448 2.629 35.387 1 49.23 ? C9A FMN 1730 A 1 HETATM 17 N N10 FMN . . . G 4 54.169 2.572 34.217 1 50.7 ? N10 FMN 1730 A 1 HETATM 18 C C10 FMN . . . G 4 53.66 3.255 33.104 1 56.84 ? C10 FMN 1730 A 1 HETATM 19 C C1' FMN . . . G 4 55.521 1.958 34.114 1 45.61 ? C1' FMN 1730 A 1 HETATM 20 C C2' FMN . . . G 4 56.658 2.76 34.708 1 43.4 ? C2' FMN 1730 A 1 HETATM 21 O O2' FMN . . . G 4 56.992 3.805 33.855 1 36.79 ? O2' FMN 1730 A 1 HETATM 22 C C3' FMN . . . G 4 57.884 1.863 34.709 1 47.28 ? C3' FMN 1730 A 1 HETATM 23 O O3' FMN . . . G 4 58.044 1.622 33.319 1 48.04 ? O3' FMN 1730 A 1 HETATM 24 C C4' FMN . . . G 4 57.73 0.56 35.577 1 49.07 ? C4' FMN 1730 A 1 HETATM 25 O O4' FMN . . . G 4 56.929 0.903 36.659 1 53.67 ? O4' FMN 1730 A 1 HETATM 26 C C5' FMN . . . G 4 58.919 -0.035 36.334 1 46.48 ? C5' FMN 1730 A 1 HETATM 27 O O5' FMN . . . G 4 59.587 1.056 36.936 1 40.85 ? O5' FMN 1730 A 1 HETATM 28 P P FMN . . . G 4 60.145 0.936 38.413 1 39.14 ? P FMN 1730 A 1 HETATM 29 O O1P FMN . . . G 4 58.952 1.508 39.152 1 35.79 ? O1P FMN 1730 A 1 HETATM 30 O O2P FMN . . . G 4 60.475 -0.519 38.737 1 37.76 ? O2P FMN 1730 A 1 HETATM 31 O O3P FMN . . . G 4 61.352 1.933 38.499 1 40.08 ? O3P FMN 1730 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #