data_1O95 # _model_server_result.job_id g9fc9jZkrgHoMEamzMi57Q _model_server_result.datetime_utc '2024-11-25 14:02:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o95 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1730}' # _entry.id 1O95 # _exptl.entry_id 1O95 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.35 _cell.angle_gamma 90 _cell.entry_id 1O95 _cell.length_a 102.5 _cell.length_b 116.513 _cell.length_c 138.706 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O95 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 30 A CYS 30 1_555 G C6 FMN . A FMN 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? covale ? covale2 B SG CYS 30 B CYS 30 1_555 J C6 FMN . B FMN 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc1 A SG CYS 345 A CYS 345 1_555 I FE1 SF4 . A SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc2 A SG CYS 348 A CYS 348 1_555 I FE4 SF4 . A SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.726 ? metalc ? metalc3 A SG CYS 351 A CYS 351 1_555 I FE2 SF4 . A SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc4 A SG CYS 364 A CYS 364 1_555 I FE3 SF4 . A SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc5 B SG CYS 345 B CYS 345 1_555 L FE3 SF4 . B SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc6 B SG CYS 348 B CYS 348 1_555 L FE1 SF4 . B SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc7 B SG CYS 351 B CYS 351 1_555 L FE2 SF4 . B SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc8 B SG CYS 364 B CYS 364 1_555 L FE4 SF4 . B SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 166 n n N1 C10 FMN doub 167 n n C2 O2 FMN doub 168 n n C2 N3 FMN sing 169 n n N3 C4 FMN sing 170 n n N3 HN3 FMN sing 171 n n C4 O4 FMN doub 172 n n C4 C4A FMN sing 173 n n C4A N5 FMN doub 174 n n C4A C10 FMN sing 175 n n N5 C5A FMN sing 176 n n C5A C6 FMN doub 177 n y C5A C9A FMN sing 178 n y C6 C7 FMN sing 179 n y C6 H6 FMN sing 180 n n C7 C7M FMN sing 181 n n C7 C8 FMN doub 182 n y C7M HM71 FMN sing 183 n n C7M HM72 FMN sing 184 n n C7M HM73 FMN sing 185 n n C8 C8M FMN sing 186 n n C8 C9 FMN sing 187 n y C8M HM81 FMN sing 188 n n C8M HM82 FMN sing 189 n n C8M HM83 FMN sing 190 n n C9 C9A FMN doub 191 n y C9 H9 FMN sing 192 n n C9A N10 FMN sing 193 n n N10 C10 FMN sing 194 n n N10 C1' FMN sing 195 n n C1' C2' FMN sing 196 n n C1' "H1'1" FMN sing 197 n n C1' "H1'2" FMN sing 198 n n C2' O2' FMN sing 199 n n C2' C3' FMN sing 200 n n C2' H2' FMN sing 201 n n O2' HO2' FMN sing 202 n n C3' O3' FMN sing 203 n n C3' C4' FMN sing 204 n n C3' H3' FMN sing 205 n n O3' HO3' FMN sing 206 n n C4' O4' FMN sing 207 n n C4' C5' FMN sing 208 n n C4' H4' FMN sing 209 n n O4' HO4' FMN sing 210 n n C5' O5' FMN sing 211 n n C5' "H5'1" FMN sing 212 n n C5' "H5'2" FMN sing 213 n n O5' P FMN sing 214 n n P O1P FMN doub 215 n n P O2P FMN sing 216 n n P O3P FMN sing 217 n n O2P HOP2 FMN sing 218 n n O3P HOP3 FMN sing 219 n n # _atom_sites.entry_id 1O95 _atom_sites.fract_transf_matrix[1][1] 0.009756 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000914 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 FMN A 1 1730 1730 FMN FMN . H 5 ADP A 1 1731 1731 ADP ADP . I 6 SF4 A 1 1732 1732 SF4 SF4 . J 4 FMN B 1 1730 1730 FMN FMN . K 5 ADP B 1 1731 1731 ADP ADP . L 6 SF4 B 1 1732 1732 SF4 SF4 . M 7 AMP C 1 1236 1236 AMP AMP . N 7 AMP E 1 1237 1237 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . J 4 18.526 2.473 41.708 1 45.4 ? N1 FMN 1730 B 1 HETATM 2 C C2 FMN . . . J 4 18.815 3.081 42.93 1 44.17 ? C2 FMN 1730 B 1 HETATM 3 O O2 FMN . . . J 4 18.071 3.035 43.921 1 41.59 ? O2 FMN 1730 B 1 HETATM 4 N N3 FMN . . . J 4 20.014 3.737 43.033 1 45.54 ? N3 FMN 1730 B 1 HETATM 5 C C4 FMN . . . J 4 20.912 3.826 41.974 1 46.83 ? C4 FMN 1730 B 1 HETATM 6 O O4 FMN . . . J 4 21.501 4.93 42.013 1 52.33 ? O4 FMN 1730 B 1 HETATM 7 C C4A FMN . . . J 4 20.639 3.171 40.732 1 43.62 ? C4A FMN 1730 B 1 HETATM 8 N N5 FMN . . . J 4 21.517 3.212 39.636 1 39.31 ? N5 FMN 1730 B 1 HETATM 9 C C5A FMN . . . J 4 21.199 2.602 38.453 1 38.07 ? C5A FMN 1730 B 1 HETATM 10 C C6 FMN . . . J 4 22.028 2.659 37.318 1 34.74 ? C6 FMN 1730 B 1 HETATM 11 C C7 FMN . . . J 4 21.69 2.033 36.092 1 32.91 ? C7 FMN 1730 B 1 HETATM 12 C C7M FMN . . . J 4 21.965 2.688 34.751 1 23.44 ? C7M FMN 1730 B 1 HETATM 13 C C8 FMN . . . J 4 20.505 1.339 36.088 1 35.51 ? C8 FMN 1730 B 1 HETATM 14 C C8M FMN . . . J 4 19.797 1.346 34.791 1 38.2 ? C8M FMN 1730 B 1 HETATM 15 C C9 FMN . . . J 4 19.661 1.305 37.19 1 38.98 ? C9 FMN 1730 B 1 HETATM 16 C C9A FMN . . . J 4 19.989 1.929 38.378 1 40.53 ? C9A FMN 1730 B 1 HETATM 17 N N10 FMN . . . J 4 19.083 1.88 39.421 1 43.36 ? N10 FMN 1730 B 1 HETATM 18 C C10 FMN . . . J 4 19.416 2.501 40.619 1 43.87 ? C10 FMN 1730 B 1 HETATM 19 C C1' FMN . . . J 4 17.915 0.91 39.328 1 43.1 ? C1' FMN 1730 B 1 HETATM 20 C C2' FMN . . . J 4 16.548 1.496 38.908 1 40.69 ? C2' FMN 1730 B 1 HETATM 21 O O2' FMN . . . J 4 16.193 2.545 39.799 1 30.63 ? O2' FMN 1730 B 1 HETATM 22 C C3' FMN . . . J 4 15.47 0.333 38.789 1 43.1 ? C3' FMN 1730 B 1 HETATM 23 O O3' FMN . . . J 4 15.125 -0.24 40.037 1 46.63 ? O3' FMN 1730 B 1 HETATM 24 C C4' FMN . . . J 4 15.752 -0.917 37.903 1 40.71 ? C4' FMN 1730 B 1 HETATM 25 O O4' FMN . . . J 4 16.322 -0.521 36.683 1 42.84 ? O4' FMN 1730 B 1 HETATM 26 C C5' FMN . . . J 4 14.531 -1.777 37.544 1 37.3 ? C5' FMN 1730 B 1 HETATM 27 O O5' FMN . . . J 4 13.435 -1.084 36.918 1 36.46 ? O5' FMN 1730 B 1 HETATM 28 P P FMN . . . J 4 13.151 -0.725 35.319 1 34.24 ? P FMN 1730 B 1 HETATM 29 O O1P FMN . . . J 4 14.249 0.149 34.713 1 32.11 ? O1P FMN 1730 B 1 HETATM 30 O O2P FMN . . . J 4 12.839 -1.97 34.595 1 32.94 ? O2P FMN 1730 B 1 HETATM 31 O O3P FMN . . . J 4 11.974 0.187 35.071 1 32.75 ? O3P FMN 1730 B 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #