data_1O95 # _model_server_result.job_id xvjan7i8bS2haopAwvPP8A _model_server_result.datetime_utc '2024-11-22 10:40:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o95 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1731}' # _entry.id 1O95 # _exptl.entry_id 1O95 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.35 _cell.angle_gamma 90 _cell.entry_id 1O95 _cell.length_a 102.5 _cell.length_b 116.513 _cell.length_c 138.706 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O95 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 30 A CYS 30 1_555 G C6 FMN . A FMN 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? covale ? covale2 B SG CYS 30 B CYS 30 1_555 J C6 FMN . B FMN 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc1 A SG CYS 345 A CYS 345 1_555 I FE1 SF4 . A SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc2 A SG CYS 348 A CYS 348 1_555 I FE4 SF4 . A SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.726 ? metalc ? metalc3 A SG CYS 351 A CYS 351 1_555 I FE2 SF4 . A SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc4 A SG CYS 364 A CYS 364 1_555 I FE3 SF4 . A SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc5 B SG CYS 345 B CYS 345 1_555 L FE3 SF4 . B SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc6 B SG CYS 348 B CYS 348 1_555 L FE1 SF4 . B SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc7 B SG CYS 351 B CYS 351 1_555 L FE2 SF4 . B SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc8 B SG CYS 364 B CYS 364 1_555 L FE4 SF4 . B SF4 1732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1O95 _atom_sites.fract_transf_matrix[1][1] 0.009756 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000914 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 FMN A 1 1730 1730 FMN FMN . H 5 ADP A 1 1731 1731 ADP ADP . I 6 SF4 A 1 1732 1732 SF4 SF4 . J 4 FMN B 1 1730 1730 FMN FMN . K 5 ADP B 1 1731 1731 ADP ADP . L 6 SF4 B 1 1732 1732 SF4 SF4 . M 7 AMP C 1 1236 1236 AMP AMP . N 7 AMP E 1 1237 1237 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . H 5 47.944 -3.874 61.57 1 45.79 ? PB ADP 1731 A 1 HETATM 2 O O1B ADP . . . H 5 47.879 -4.586 60.238 1 42.71 ? O1B ADP 1731 A 1 HETATM 3 O O2B ADP . . . H 5 46.758 -2.905 61.765 1 49.03 ? O2B ADP 1731 A 1 HETATM 4 O O3B ADP . . . H 5 49.273 -3.278 61.726 1 47.03 ? O3B ADP 1731 A 1 HETATM 5 P PA ADP . . . H 5 48.735 -6.047 63.023 1 47.08 ? PA ADP 1731 A 1 HETATM 6 O O1A ADP . . . H 5 47.898 -7.262 63.082 1 44.76 ? O1A ADP 1731 A 1 HETATM 7 O O2A ADP . . . H 5 50.046 -6.135 62.189 1 45.91 ? O2A ADP 1731 A 1 HETATM 8 O O3A ADP . . . H 5 47.786 -4.802 62.821 1 46.35 ? O3A ADP 1731 A 1 HETATM 9 O O5' ADP . . . H 5 49.082 -5.472 64.443 1 46.21 ? O5' ADP 1731 A 1 HETATM 10 C C5' ADP . . . H 5 48.357 -5.769 65.578 1 46.35 ? C5' ADP 1731 A 1 HETATM 11 C C4' ADP . . . H 5 49.491 -5.851 66.576 1 46.99 ? C4' ADP 1731 A 1 HETATM 12 O O4' ADP . . . H 5 48.878 -5.68 67.813 1 48.93 ? O4' ADP 1731 A 1 HETATM 13 C C3' ADP . . . H 5 50.178 -7.21 66.647 1 45.52 ? C3' ADP 1731 A 1 HETATM 14 O O3' ADP . . . H 5 51.571 -7.187 66.405 1 40.13 ? O3' ADP 1731 A 1 HETATM 15 C C2' ADP . . . H 5 50.112 -7.546 68.106 1 45.35 ? C2' ADP 1731 A 1 HETATM 16 O O2' ADP . . . H 5 51.367 -7.169 68.528 1 40.74 ? O2' ADP 1731 A 1 HETATM 17 C C1' ADP . . . H 5 49.597 -6.362 68.803 1 48.01 ? C1' ADP 1731 A 1 HETATM 18 N N9 ADP . . . H 5 48.712 -6.55 69.939 1 51.03 ? N9 ADP 1731 A 1 HETATM 19 C C8 ADP . . . H 5 47.443 -7.042 69.866 1 52.77 ? C8 ADP 1731 A 1 HETATM 20 N N7 ADP . . . H 5 46.872 -7.002 71.089 1 53.27 ? N7 ADP 1731 A 1 HETATM 21 C C5 ADP . . . H 5 47.761 -6.442 71.912 1 52.26 ? C5 ADP 1731 A 1 HETATM 22 C C6 ADP . . . H 5 47.623 -6.2 73.235 1 51.28 ? C6 ADP 1731 A 1 HETATM 23 N N6 ADP . . . H 5 46.478 -6.6 73.754 1 50.84 ? N6 ADP 1731 A 1 HETATM 24 N N1 ADP . . . H 5 48.668 -5.623 73.914 1 51.86 ? N1 ADP 1731 A 1 HETATM 25 C C2 ADP . . . H 5 49.846 -5.325 73.213 1 53.85 ? C2 ADP 1731 A 1 HETATM 26 N N3 ADP . . . H 5 49.998 -5.575 71.854 1 51.72 ? N3 ADP 1731 A 1 HETATM 27 C C4 ADP . . . H 5 48.935 -6.136 71.222 1 52.18 ? C4 ADP 1731 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #