data_1O96 # _model_server_result.job_id ViiQxBj0B0t5aqWn-C5Hmg _model_server_result.datetime_utc '2024-11-22 10:18:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o96 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1262}' # _entry.id 1O96 # _exptl.entry_id 1O96 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1O96 _cell.length_a 117.516 _cell.length_b 126.877 _cell.length_c 221.39 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O96 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 PQS dimeric 2 author_and_software_defined_assembly 3 PQS dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J 1 1 C,D,K,L 2 1 E,F,M,N 3 1 G,H,O,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 K N N ? 3 M N N ? 3 O N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 1O96 _atom_sites.fract_transf_matrix[1][1] 0.008509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 AMP A 1 1263 1263 AMP AMP . J 4 FAD B 1 1319 1319 FAD FAD . K 3 AMP C 1 1262 1262 AMP AMP . L 4 FAD D 1 1319 1319 FAD FAD . M 3 AMP E 1 1262 1262 AMP AMP . N 4 FAD F 1 1319 1319 FAD FAD . O 3 AMP Q 1 1262 1262 AMP AMP . P 4 FAD Z 1 1319 1319 FAD FAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . K 3 -6.225 69.507 59.965 1 41.47 ? P AMP 1262 C 1 HETATM 2 O O1P AMP . . . K 3 -7.044 68.235 59.692 1 50.62 ? O1P AMP 1262 C 1 HETATM 3 O O2P AMP . . . K 3 -6.49 69.905 58.58 1 41.79 ? O2P AMP 1262 C 1 HETATM 4 O O3P AMP . . . K 3 -4.806 69.2 60.387 1 30.86 ? O3P AMP 1262 C 1 HETATM 5 O O5' AMP . . . K 3 -7.093 70.163 61.148 1 42.24 ? O5' AMP 1262 C 1 HETATM 6 C C5' AMP . . . K 3 -7.263 71.506 61.453 1 45.4 ? C5' AMP 1262 C 1 HETATM 7 C C4' AMP . . . K 3 -8.703 71.98 61.286 1 45.37 ? C4' AMP 1262 C 1 HETATM 8 O O4' AMP . . . K 3 -9.285 71.31 60.212 1 48.46 ? O4' AMP 1262 C 1 HETATM 9 C C3' AMP . . . K 3 -9.711 71.801 62.389 1 41.17 ? C3' AMP 1262 C 1 HETATM 10 O O3' AMP . . . K 3 -9.599 72.823 63.315 1 40.66 ? O3' AMP 1262 C 1 HETATM 11 C C2' AMP . . . K 3 -10.999 71.995 61.64 1 41.03 ? C2' AMP 1262 C 1 HETATM 12 O O2' AMP . . . K 3 -11.226 73.339 61.38 1 39.86 ? O2' AMP 1262 C 1 HETATM 13 C C1' AMP . . . K 3 -10.7 71.454 60.275 1 46.15 ? C1' AMP 1262 C 1 HETATM 14 N N9 AMP . . . K 3 -11.304 70.119 60.116 1 50.17 ? N9 AMP 1262 C 1 HETATM 15 C C8 AMP . . . K 3 -10.598 68.933 59.987 1 51.75 ? C8 AMP 1262 C 1 HETATM 16 N N7 AMP . . . K 3 -11.469 67.913 59.858 1 52.33 ? N7 AMP 1262 C 1 HETATM 17 C C5 AMP . . . K 3 -12.727 68.41 59.931 1 52.39 ? C5 AMP 1262 C 1 HETATM 18 C C6 AMP . . . K 3 -13.994 67.836 59.86 1 51.07 ? C6 AMP 1262 C 1 HETATM 19 N N6 AMP . . . K 3 -14.146 66.556 59.729 1 50.07 ? N6 AMP 1262 C 1 HETATM 20 N N1 AMP . . . K 3 -15.131 68.605 59.912 1 52.08 ? N1 AMP 1262 C 1 HETATM 21 C C2 AMP . . . K 3 -15.03 69.974 60.059 1 50.3 ? C2 AMP 1262 C 1 HETATM 22 N N3 AMP . . . K 3 -13.778 70.542 60.142 1 50.76 ? N3 AMP 1262 C 1 HETATM 23 C C4 AMP . . . K 3 -12.64 69.799 60.067 1 51.5 ? C4 AMP 1262 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #