data_1O96 # _model_server_result.job_id W23K_TNurNuXXfhx6IbAhA _model_server_result.datetime_utc '2024-11-25 14:09:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o96 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1319}' # _entry.id 1O96 # _exptl.entry_id 1O96 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1O96 _cell.length_a 117.516 _cell.length_b 126.877 _cell.length_c 221.39 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O96 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 PQS dimeric 2 author_and_software_defined_assembly 3 PQS dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J 1 1 C,D,K,L 2 1 E,F,M,N 3 1 G,H,O,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 L N N ? 4 N N N ? 4 P N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 122 n n PA O2A FAD sing 123 n n PA O5B FAD sing 124 n n PA O3P FAD sing 125 n n O2A HOA2 FAD sing 126 n n O5B C5B FAD sing 127 n n C5B C4B FAD sing 128 n n C5B H51A FAD sing 129 n n C5B H52A FAD sing 130 n n C4B O4B FAD sing 131 n n C4B C3B FAD sing 132 n n C4B H4B FAD sing 133 n n O4B C1B FAD sing 134 n n C3B O3B FAD sing 135 n n C3B C2B FAD sing 136 n n C3B H3B FAD sing 137 n n O3B HO3A FAD sing 138 n n C2B O2B FAD sing 139 n n C2B C1B FAD sing 140 n n C2B H2B FAD sing 141 n n O2B HO2A FAD sing 142 n n C1B N9A FAD sing 143 n n C1B H1B FAD sing 144 n n N9A C8A FAD sing 145 n y N9A C4A FAD sing 146 n y C8A N7A FAD doub 147 n y C8A H8A FAD sing 148 n n N7A C5A FAD sing 149 n y C5A C6A FAD sing 150 n y C5A C4A FAD doub 151 n y C6A N6A FAD sing 152 n n C6A N1A FAD doub 153 n y N6A H61A FAD sing 154 n n N6A H62A FAD sing 155 n n N1A C2A FAD sing 156 n y C2A N3A FAD doub 157 n y C2A H2A FAD sing 158 n n N3A C4A FAD sing 159 n y N1 C2 FAD sing 160 n n N1 C10 FAD doub 161 n n C2 O2 FAD doub 162 n n C2 N3 FAD sing 163 n n N3 C4 FAD sing 164 n n N3 HN3 FAD sing 165 n n C4 O4 FAD doub 166 n n C4 C4X FAD sing 167 n n C4X N5 FAD doub 168 n n C4X C10 FAD sing 169 n n N5 C5X FAD sing 170 n n C5X C6 FAD doub 171 n y C5X C9A FAD sing 172 n y C6 C7 FAD sing 173 n y C6 H6 FAD sing 174 n n C7 C7M FAD sing 175 n n C7 C8 FAD doub 176 n y C7M HM71 FAD sing 177 n n C7M HM72 FAD sing 178 n n C7M HM73 FAD sing 179 n n C8 C8M FAD sing 180 n n C8 C9 FAD sing 181 n y C8M HM81 FAD sing 182 n n C8M HM82 FAD sing 183 n n C8M HM83 FAD sing 184 n n C9 C9A FAD doub 185 n y C9 H9 FAD sing 186 n n C9A N10 FAD sing 187 n n N10 C10 FAD sing 188 n n N10 C1' FAD sing 189 n n C1' C2' FAD sing 190 n n C1' "H1'1" FAD sing 191 n n C1' "H1'2" FAD sing 192 n n C2' O2' FAD sing 193 n n C2' C3' FAD sing 194 n n C2' H2' FAD sing 195 n n O2' HO2' FAD sing 196 n n C3' O3' FAD sing 197 n n C3' C4' FAD sing 198 n n C3' H3' FAD sing 199 n n O3' HO3' FAD sing 200 n n C4' O4' FAD sing 201 n n C4' C5' FAD sing 202 n n C4' H4' FAD sing 203 n n O4' HO4' FAD sing 204 n n C5' O5' FAD sing 205 n n C5' "H5'1" FAD sing 206 n n C5' "H5'2" FAD sing 207 n n O5' P FAD sing 208 n n P O1P FAD doub 209 n n P O2P FAD sing 210 n n P O3P FAD sing 211 n n O2P HOP2 FAD sing 212 n n # _atom_sites.entry_id 1O96 _atom_sites.fract_transf_matrix[1][1] 0.008509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 AMP A 1 1263 1263 AMP AMP . J 4 FAD B 1 1319 1319 FAD FAD . K 3 AMP C 1 1262 1262 AMP AMP . L 4 FAD D 1 1319 1319 FAD FAD . M 3 AMP E 1 1262 1262 AMP AMP . N 4 FAD F 1 1319 1319 FAD FAD . O 3 AMP Q 1 1262 1262 AMP AMP . P 4 FAD Z 1 1319 1319 FAD FAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . L 4 0.863 68.632 76.848 1 32.54 ? PA FAD 1319 D 1 HETATM 2 O O1A FAD . . . L 4 -0.675 68.678 77.397 1 21.3 ? O1A FAD 1319 D 1 HETATM 3 O O2A FAD . . . L 4 1.155 67.925 75.411 1 23.12 ? O2A FAD 1319 D 1 HETATM 4 O O5B FAD . . . L 4 1.819 67.766 77.866 1 28.18 ? O5B FAD 1319 D 1 HETATM 5 C C5B FAD . . . L 4 1.575 67.87 79.273 1 28.87 ? C5B FAD 1319 D 1 HETATM 6 C C4B FAD . . . L 4 2.34 66.602 79.823 1 33.46 ? C4B FAD 1319 D 1 HETATM 7 O O4B FAD . . . L 4 2.437 66.616 81.235 1 35.05 ? O4B FAD 1319 D 1 HETATM 8 C C3B FAD . . . L 4 1.719 65.2 79.418 1 30.47 ? C3B FAD 1319 D 1 HETATM 9 O O3B FAD . . . L 4 2.717 64.334 78.828 1 30.14 ? O3B FAD 1319 D 1 HETATM 10 C C2B FAD . . . L 4 1.354 64.585 80.754 1 33.4 ? C2B FAD 1319 D 1 HETATM 11 O O2B FAD . . . L 4 1.767 63.225 80.879 1 38.48 ? O2B FAD 1319 D 1 HETATM 12 C C1B FAD . . . L 4 2.284 65.259 81.719 1 33.89 ? C1B FAD 1319 D 1 HETATM 13 N N9A FAD . . . L 4 1.745 65.292 83.101 1 34.83 ? N9A FAD 1319 D 1 HETATM 14 C C8A FAD . . . L 4 0.456 65.65 83.51 1 36.54 ? C8A FAD 1319 D 1 HETATM 15 N N7A FAD . . . L 4 0.467 65.683 84.928 1 40.15 ? N7A FAD 1319 D 1 HETATM 16 C C5A FAD . . . L 4 1.756 65.363 85.351 1 36.71 ? C5A FAD 1319 D 1 HETATM 17 C C6A FAD . . . L 4 2.315 65.163 86.608 1 37.28 ? C6A FAD 1319 D 1 HETATM 18 N N6A FAD . . . L 4 1.485 65.368 87.634 1 42.94 ? N6A FAD 1319 D 1 HETATM 19 N N1A FAD . . . L 4 3.678 64.84 86.776 1 35.95 ? N1A FAD 1319 D 1 HETATM 20 C C2A FAD . . . L 4 4.453 64.619 85.615 1 41.01 ? C2A FAD 1319 D 1 HETATM 21 N N3A FAD . . . L 4 3.881 64.774 84.332 1 37.68 ? N3A FAD 1319 D 1 HETATM 22 C C4A FAD . . . L 4 2.562 65.148 84.218 1 35.84 ? C4A FAD 1319 D 1 HETATM 23 N N1 FAD . . . L 4 4.75 74.218 71.629 1 24.62 ? N1 FAD 1319 D 1 HETATM 24 C C2 FAD . . . L 4 5.852 74.712 72.373 1 31 ? C2 FAD 1319 D 1 HETATM 25 O O2 FAD . . . L 4 6.124 74.256 73.505 1 29.43 ? O2 FAD 1319 D 1 HETATM 26 N N3 FAD . . . L 4 6.713 75.701 71.904 1 27.06 ? N3 FAD 1319 D 1 HETATM 27 C C4 FAD . . . L 4 6.409 76.242 70.661 1 31.48 ? C4 FAD 1319 D 1 HETATM 28 O O4 FAD . . . L 4 7.082 77.237 70.247 1 32.14 ? O4 FAD 1319 D 1 HETATM 29 C C4X FAD . . . L 4 5.315 75.773 69.918 1 28.09 ? C4X FAD 1319 D 1 HETATM 30 N N5 FAD . . . L 4 5.025 76.331 68.656 1 30.98 ? N5 FAD 1319 D 1 HETATM 31 C C5X FAD . . . L 4 3.975 75.802 67.872 1 28.75 ? C5X FAD 1319 D 1 HETATM 32 C C6 FAD . . . L 4 3.713 76.262 66.611 1 28.94 ? C6 FAD 1319 D 1 HETATM 33 C C7 FAD . . . L 4 2.661 75.8 65.813 1 31.3 ? C7 FAD 1319 D 1 HETATM 34 C C7M FAD . . . L 4 2.654 76.129 64.317 1 27.66 ? C7M FAD 1319 D 1 HETATM 35 C C8 FAD . . . L 4 1.83 74.769 66.292 1 31.17 ? C8 FAD 1319 D 1 HETATM 36 C C8M FAD . . . L 4 1.139 73.849 65.239 1 23.1 ? C8M FAD 1319 D 1 HETATM 37 C C9 FAD . . . L 4 2.128 74.297 67.596 1 26.76 ? C9 FAD 1319 D 1 HETATM 38 C C9A FAD . . . L 4 3.182 74.785 68.364 1 28.42 ? C9A FAD 1319 D 1 HETATM 39 N N10 FAD . . . L 4 3.404 74.306 69.698 1 29.57 ? N10 FAD 1319 D 1 HETATM 40 C C10 FAD . . . L 4 4.521 74.756 70.415 1 25.45 ? C10 FAD 1319 D 1 HETATM 41 C C1' FAD . . . L 4 2.177 73.815 70.506 1 23.97 ? C1' FAD 1319 D 1 HETATM 42 C C2' FAD . . . L 4 2.39 72.254 70.565 1 25.86 ? C2' FAD 1319 D 1 HETATM 43 O O2' FAD . . . L 4 1.708 71.665 69.436 1 26.24 ? O2' FAD 1319 D 1 HETATM 44 C C3' FAD . . . L 4 1.862 71.596 71.835 1 24.95 ? C3' FAD 1319 D 1 HETATM 45 O O3' FAD . . . L 4 0.504 72.078 72.081 1 28.13 ? O3' FAD 1319 D 1 HETATM 46 C C4' FAD . . . L 4 2.647 71.963 73.074 1 25 ? C4' FAD 1319 D 1 HETATM 47 O O4' FAD . . . L 4 4.056 71.928 72.835 1 22.56 ? O4' FAD 1319 D 1 HETATM 48 C C5' FAD . . . L 4 2.126 70.956 74.175 1 23.56 ? C5' FAD 1319 D 1 HETATM 49 O O5' FAD . . . L 4 2.634 71.442 75.417 1 30.53 ? O5' FAD 1319 D 1 HETATM 50 P P FAD . . . L 4 2.896 70.543 76.8 1 27.6 ? P FAD 1319 D 1 HETATM 51 O O1P FAD . . . L 4 3.895 69.402 76.281 1 26.1 ? O1P FAD 1319 D 1 HETATM 52 O O2P FAD . . . L 4 3.338 71.475 77.906 1 26.38 ? O2P FAD 1319 D 1 HETATM 53 O O3P FAD . . . L 4 1.329 70.072 77.195 1 21.44 ? O3P FAD 1319 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #