data_1O9X # _model_server_result.job_id -ZTVuaKZShvjjGDFe6IHdA _model_server_result.datetime_utc '2025-06-24 23:33:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1o9x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2001}' # _entry.id 1O9X # _exptl.entry_id 1O9X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1O9X _cell.length_a 80.084 _cell.length_b 202.702 _cell.length_c 39.366 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O9X _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OH TYR 161 A TYR 161 1_555 H FE HEM . A HEM 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1O9X _atom_sites.fract_transf_matrix[1][1] 0.012487 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYR A 1 1002 1002 MYR MYR . C 2 MYR A 1 1003 1003 MYR MYR . D 2 MYR A 1 1004 1004 MYR MYR . E 2 MYR A 1 1005 1005 MYR MYR . F 2 MYR A 1 1006 1006 MYR MYR . G 2 MYR A 1 1007 1007 MYR MYR . H 3 HEM A 1 2001 2001 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . H 3 13.992 88.012 18.587 1 67.26 ? CHA HEM 2001 A 1 HETATM 2 C CHB HEM . . . H 3 10.438 85.696 20.955 1 67.26 ? CHB HEM 2001 A 1 HETATM 3 C CHC HEM . . . H 3 10.202 89.446 24.118 1 67.26 ? CHC HEM 2001 A 1 HETATM 4 C CHD HEM . . . H 3 13.759 91.666 21.702 1 67.26 ? CHD HEM 2001 A 1 HETATM 5 C C1A HEM . . . H 3 13.069 87.053 18.946 1 67.26 ? C1A HEM 2001 A 1 HETATM 6 C C2A HEM . . . H 3 12.867 85.852 18.25 1 67.26 ? C2A HEM 2001 A 1 HETATM 7 C C3A HEM . . . H 3 11.845 85.165 18.926 1 67.26 ? C3A HEM 2001 A 1 HETATM 8 C C4A HEM . . . H 3 11.452 85.984 20.03 1 67.26 ? C4A HEM 2001 A 1 HETATM 9 C CMA HEM . . . H 3 11.269 83.824 18.539 1 67.26 ? CMA HEM 2001 A 1 HETATM 10 C CAA HEM . . . H 3 13.622 85.423 16.99 1 67.26 ? CAA HEM 2001 A 1 HETATM 11 C CBA HEM . . . H 3 12.838 85.475 15.676 1 67.26 ? CBA HEM 2001 A 1 HETATM 12 C CGA HEM . . . H 3 13.65 86.157 14.57 1 67.26 ? CGA HEM 2001 A 1 HETATM 13 O O1A HEM . . . H 3 13.844 85.579 13.472 1 67.26 ? O1A HEM 2001 A 1 HETATM 14 O O2A HEM . . . H 3 14.141 87.314 14.699 1 67.26 ? O2A HEM 2001 A 1 HETATM 15 C C1B HEM . . . H 3 10.022 86.504 22.028 1 67.26 ? C1B HEM 2001 A 1 HETATM 16 C C2B HEM . . . H 3 8.959 86.208 22.919 1 67.26 ? C2B HEM 2001 A 1 HETATM 17 C C3B HEM . . . H 3 8.88 87.319 23.867 1 67.26 ? C3B HEM 2001 A 1 HETATM 18 C C4B HEM . . . H 3 9.93 88.246 23.474 1 67.26 ? C4B HEM 2001 A 1 HETATM 19 C CMB HEM . . . H 3 8.133 84.955 22.796 1 67.26 ? CMB HEM 2001 A 1 HETATM 20 C CAB HEM . . . H 3 8.033 87.613 24.973 1 67.26 ? CAB HEM 2001 A 1 HETATM 21 C CBB HEM . . . H 3 6.983 86.865 25.474 1 67.26 ? CBB HEM 2001 A 1 HETATM 22 C C1C HEM . . . H 3 11.164 90.386 23.757 1 67.26 ? C1C HEM 2001 A 1 HETATM 23 C C2C HEM . . . H 3 11.384 91.613 24.427 1 67.26 ? C2C HEM 2001 A 1 HETATM 24 C C3C HEM . . . H 3 12.443 92.277 23.706 1 67.26 ? C3C HEM 2001 A 1 HETATM 25 C C4C HEM . . . H 3 12.787 91.401 22.641 1 67.26 ? C4C HEM 2001 A 1 HETATM 26 C CMC HEM . . . H 3 10.569 92.055 25.663 1 67.26 ? CMC HEM 2001 A 1 HETATM 27 C CAC HEM . . . H 3 13.067 93.549 23.901 1 67.26 ? CAC HEM 2001 A 1 HETATM 28 C CBC HEM . . . H 3 12.755 94.484 24.928 1 67.26 ? CBC HEM 2001 A 1 HETATM 29 C C1D HEM . . . H 3 14.095 90.873 20.648 1 67.26 ? C1D HEM 2001 A 1 HETATM 30 C C2D HEM . . . H 3 15.082 91.212 19.675 1 67.26 ? C2D HEM 2001 A 1 HETATM 31 C C3D HEM . . . H 3 15.124 90.144 18.785 1 67.26 ? C3D HEM 2001 A 1 HETATM 32 C C4D HEM . . . H 3 14.207 89.208 19.224 1 67.26 ? C4D HEM 2001 A 1 HETATM 33 C CMD HEM . . . H 3 15.919 92.519 19.607 1 67.26 ? CMD HEM 2001 A 1 HETATM 34 C CAD HEM . . . H 3 15.99 90.038 17.535 1 67.26 ? CAD HEM 2001 A 1 HETATM 35 C CBD HEM . . . H 3 15.255 90.791 16.393 1 67.26 ? CBD HEM 2001 A 1 HETATM 36 C CGD HEM . . . H 3 16.042 90.765 15.087 1 67.26 ? CGD HEM 2001 A 1 HETATM 37 O O1D HEM . . . H 3 16.743 89.777 14.8 1 67.26 ? O1D HEM 2001 A 1 HETATM 38 O O2D HEM . . . H 3 15.977 91.76 14.278 1 67.26 ? O2D HEM 2001 A 1 HETATM 39 N NA HEM . . . H 3 12.237 87.113 20.025 1 67.26 ? NA HEM 2001 A 1 HETATM 40 N NB HEM . . . H 3 10.591 87.721 22.365 1 67.26 ? NB HEM 2001 A 1 HETATM 41 N NC HEM . . . H 3 12.035 90.252 22.704 1 67.26 ? NC HEM 2001 A 1 HETATM 42 N ND HEM . . . H 3 13.598 89.639 20.368 1 67.26 ? ND HEM 2001 A 1 HETATM 43 FE FE HEM . . . H 3 12.137 88.645 21.387 1 67.26 ? FE HEM 2001 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #