data_1OAX # _model_server_result.job_id TwRVaa0Fm-RxbKRSu4H7bA _model_server_result.datetime_utc '2024-11-28 08:03:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1oax # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":500}' # _entry.id 1OAX # _exptl.entry_id 1OAX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 182.175 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ACENAPHTHENEQUINONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OAX _cell.length_a 78.726 _cell.length_b 78.636 _cell.length_c 167.564 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OAX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 PQS dimeric 2 author_and_software_defined_assembly 3 PQS dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G,I,K 1 1 D,L 2 1 B,E,H,J,M 3 1 F,N 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 B SG CYS 22 J CYS 22 1_555 B SG CYS 96 J CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 C SG CYS 22 L CYS 22 1_555 C SG CYS 90 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 22 M CYS 22 1_555 D SG CYS 90 M CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf5 E SG CYS 22 N CYS 22 1_555 E SG CYS 90 N CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 F SG CYS 22 O CYS 22 1_555 F SG CYS 90 O CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? # _chem_comp.formula 'C12 H6 O2' _chem_comp.formula_weight 182.175 _chem_comp.id ANQ _chem_comp.mon_nstd_flag . _chem_comp.name ACENAPHTHENEQUINONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 ANQ doub 13 n n C1 C81 ANQ sing 14 n n C1 C2 ANQ sing 15 n n C81 C8 ANQ doub 16 n y C81 C82 ANQ sing 17 n y C8 C7 ANQ sing 18 n y C8 H8 ANQ sing 19 n n C82 C21 ANQ sing 20 n y C82 C51 ANQ doub 21 n y C21 C2 ANQ sing 22 n n C21 C3 ANQ doub 23 n y C2 O2 ANQ doub 24 n n C3 C4 ANQ sing 25 n y C3 H3 ANQ sing 26 n n C51 C6 ANQ sing 27 n y C51 C5 ANQ sing 28 n y C6 C7 ANQ doub 29 n y C6 H6 ANQ sing 30 n n C7 H7 ANQ sing 31 n n C5 C4 ANQ doub 32 n y C5 H5 ANQ sing 33 n n C4 H4 ANQ sing 34 n n # _atom_sites.entry_id 1OAX _atom_sites.fract_transf_matrix[1][1] 0.012702 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005968 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 ANQ H 1 500 500 ANQ ANQ . H 3 ANQ J 1 500 500 ANQ ANQ . I 4 HOH H 1 2001 2001 HOH HOH . I 4 HOH H 2 2002 2002 HOH HOH . I 4 HOH H 3 2003 2003 HOH HOH . I 4 HOH H 4 2004 2004 HOH HOH . I 4 HOH H 5 2005 2005 HOH HOH . I 4 HOH H 6 2006 2006 HOH HOH . I 4 HOH H 7 2007 2007 HOH HOH . I 4 HOH H 8 2008 2008 HOH HOH . I 4 HOH H 9 2009 2009 HOH HOH . I 4 HOH H 10 2010 2010 HOH HOH . I 4 HOH H 11 2011 2011 HOH HOH . I 4 HOH H 12 2012 2012 HOH HOH . I 4 HOH H 13 2013 2013 HOH HOH . J 4 HOH J 1 2001 2001 HOH HOH . J 4 HOH J 2 2002 2002 HOH HOH . J 4 HOH J 3 2003 2003 HOH HOH . J 4 HOH J 4 2004 2004 HOH HOH . J 4 HOH J 5 2005 2005 HOH HOH . J 4 HOH J 6 2006 2006 HOH HOH . J 4 HOH J 7 2007 2007 HOH HOH . J 4 HOH J 8 2008 2008 HOH HOH . J 4 HOH J 9 2009 2009 HOH HOH . J 4 HOH J 10 2010 2010 HOH HOH . J 4 HOH J 11 2011 2011 HOH HOH . J 4 HOH J 12 2012 2012 HOH HOH . J 4 HOH J 13 2013 2013 HOH HOH . K 4 HOH L 1 2001 2001 HOH HOH . K 4 HOH L 2 2002 2002 HOH HOH . K 4 HOH L 3 2003 2003 HOH HOH . K 4 HOH L 4 2004 2004 HOH HOH . K 4 HOH L 5 2005 2005 HOH HOH . K 4 HOH L 6 2006 2006 HOH HOH . K 4 HOH L 7 2007 2007 HOH HOH . K 4 HOH L 8 2008 2008 HOH HOH . K 4 HOH L 9 2009 2009 HOH HOH . K 4 HOH L 10 2010 2010 HOH HOH . K 4 HOH L 11 2011 2011 HOH HOH . K 4 HOH L 12 2012 2012 HOH HOH . K 4 HOH L 13 2013 2013 HOH HOH . K 4 HOH L 14 2014 2014 HOH HOH . K 4 HOH L 15 2015 2015 HOH HOH . K 4 HOH L 16 2016 2016 HOH HOH . K 4 HOH L 17 2017 2017 HOH HOH . L 4 HOH M 1 2001 2001 HOH HOH . L 4 HOH M 2 2002 2002 HOH HOH . L 4 HOH M 3 2003 2003 HOH HOH . L 4 HOH M 4 2004 2004 HOH HOH . L 4 HOH M 5 2005 2005 HOH HOH . M 4 HOH N 1 2001 2001 HOH HOH . M 4 HOH N 2 2002 2002 HOH HOH . M 4 HOH N 3 2003 2003 HOH HOH . M 4 HOH N 4 2004 2004 HOH HOH . M 4 HOH N 5 2005 2005 HOH HOH . M 4 HOH N 6 2006 2006 HOH HOH . M 4 HOH N 7 2007 2007 HOH HOH . M 4 HOH N 8 2008 2008 HOH HOH . M 4 HOH N 9 2009 2009 HOH HOH . M 4 HOH N 10 2010 2010 HOH HOH . M 4 HOH N 11 2011 2011 HOH HOH . M 4 HOH N 12 2012 2012 HOH HOH . M 4 HOH N 13 2013 2013 HOH HOH . M 4 HOH N 14 2014 2014 HOH HOH . M 4 HOH N 15 2015 2015 HOH HOH . M 4 HOH N 16 2016 2016 HOH HOH . M 4 HOH N 17 2017 2017 HOH HOH . M 4 HOH N 18 2018 2018 HOH HOH . N 4 HOH O 1 2001 2001 HOH HOH . N 4 HOH O 2 2002 2002 HOH HOH . N 4 HOH O 3 2003 2003 HOH HOH . N 4 HOH O 4 2004 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 ANQ . . . H 3 7.161 21.417 50.094 1 56.01 ? O1 ANQ 500 J 1 HETATM 2 C C1 ANQ . . . H 3 6.345 21.398 49.107 1 55.52 ? C1 ANQ 500 J 1 HETATM 3 C C81 ANQ . . . H 3 6.344 20.414 47.977 1 55.04 ? C81 ANQ 500 J 1 HETATM 4 C C8 ANQ . . . H 3 7.152 19.28 47.64 1 54.8 ? C8 ANQ 500 J 1 HETATM 5 C C82 ANQ . . . H 3 5.325 20.745 47.137 1 55.04 ? C82 ANQ 500 J 1 HETATM 6 C C21 ANQ . . . H 3 4.64 21.841 47.572 1 55.26 ? C21 ANQ 500 J 1 HETATM 7 C C2 ANQ . . . H 3 5.209 22.347 48.846 1 55.63 ? C2 ANQ 500 J 1 HETATM 8 O O2 ANQ . . . H 3 4.824 23.358 49.539 1 56 ? O2 ANQ 500 J 1 HETATM 9 C C3 ANQ . . . H 3 3.7 22.055 46.691 1 54.85 ? C3 ANQ 500 J 1 HETATM 10 C C51 ANQ . . . H 3 4.981 20.082 45.966 1 54.69 ? C51 ANQ 500 J 1 HETATM 11 C C6 ANQ . . . H 3 5.764 18.975 45.626 1 54.64 ? C6 ANQ 500 J 1 HETATM 12 C C7 ANQ . . . H 3 6.833 18.584 46.459 1 54.62 ? C7 ANQ 500 J 1 HETATM 13 C C5 ANQ . . . H 3 3.813 20.611 45.165 1 54.66 ? C5 ANQ 500 J 1 HETATM 14 C C4 ANQ . . . H 3 3.165 21.7 45.636 1 54.6 ? C4 ANQ 500 J 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 46 _model_server_stats.element_count 14 #