data_1OBT # _model_server_result.job_id tDemzZFGOhBPrY3JoDmKPQ _model_server_result.datetime_utc '2025-02-26 15:53:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1obt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 1OBT # _exptl.entry_id 1OBT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OBT _cell.length_a 68.65 _cell.length_b 68.65 _cell.length_c 141.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OBT _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_646 y+1,x-1,-z+1 0 1 0 1 0 0 0 0 -1 68.65 -68.65 141.1 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 1OBT _atom_sites.fract_transf_matrix[1][1] 0.014567 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014567 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 701 701 AMP AMP . C 3 HOH A 1 300 300 HOH HOH . C 3 HOH A 2 302 302 HOH HOH . C 3 HOH A 3 303 303 HOH HOH . C 3 HOH A 4 304 304 HOH HOH . C 3 HOH A 5 305 305 HOH HOH . C 3 HOH A 6 306 306 HOH HOH . C 3 HOH A 7 307 307 HOH HOH . C 3 HOH A 8 308 308 HOH HOH . C 3 HOH A 9 309 309 HOH HOH . C 3 HOH A 10 310 310 HOH HOH . C 3 HOH A 11 311 311 HOH HOH . C 3 HOH A 12 312 312 HOH HOH . C 3 HOH A 13 313 313 HOH HOH . C 3 HOH A 14 314 314 HOH HOH . C 3 HOH A 15 315 315 HOH HOH . C 3 HOH A 16 316 316 HOH HOH . C 3 HOH A 17 317 317 HOH HOH . C 3 HOH A 18 318 318 HOH HOH . C 3 HOH A 19 319 319 HOH HOH . C 3 HOH A 20 320 320 HOH HOH . C 3 HOH A 21 321 321 HOH HOH . C 3 HOH A 22 322 322 HOH HOH . C 3 HOH A 23 323 323 HOH HOH . C 3 HOH A 24 324 324 HOH HOH . C 3 HOH A 25 325 325 HOH HOH . C 3 HOH A 26 326 326 HOH HOH . C 3 HOH A 27 329 329 HOH HOH . C 3 HOH A 28 331 331 HOH HOH . C 3 HOH A 29 332 332 HOH HOH . C 3 HOH A 30 333 333 HOH HOH . C 3 HOH A 31 334 334 HOH HOH . C 3 HOH A 32 335 335 HOH HOH . C 3 HOH A 33 336 336 HOH HOH . C 3 HOH A 34 337 337 HOH HOH . C 3 HOH A 35 338 338 HOH HOH . C 3 HOH A 36 339 339 HOH HOH . C 3 HOH A 37 340 340 HOH HOH . C 3 HOH A 38 341 341 HOH HOH . C 3 HOH A 39 343 343 HOH HOH . C 3 HOH A 40 344 344 HOH HOH . C 3 HOH A 41 345 345 HOH HOH . C 3 HOH A 42 346 346 HOH HOH . C 3 HOH A 43 348 348 HOH HOH . C 3 HOH A 44 349 349 HOH HOH . C 3 HOH A 45 350 350 HOH HOH . C 3 HOH A 46 351 351 HOH HOH . C 3 HOH A 47 352 352 HOH HOH . C 3 HOH A 48 354 354 HOH HOH . C 3 HOH A 49 357 357 HOH HOH . C 3 HOH A 50 360 360 HOH HOH . C 3 HOH A 51 361 361 HOH HOH . C 3 HOH A 52 363 363 HOH HOH . C 3 HOH A 53 365 365 HOH HOH . C 3 HOH A 54 366 366 HOH HOH . C 3 HOH A 55 368 368 HOH HOH . C 3 HOH A 56 369 369 HOH HOH . C 3 HOH A 57 371 371 HOH HOH . C 3 HOH A 58 372 372 HOH HOH . C 3 HOH A 59 374 374 HOH HOH . C 3 HOH A 60 375 375 HOH HOH . C 3 HOH A 61 377 377 HOH HOH . C 3 HOH A 62 378 378 HOH HOH . C 3 HOH A 63 379 379 HOH HOH . C 3 HOH A 64 382 382 HOH HOH . C 3 HOH A 65 383 383 HOH HOH . C 3 HOH A 66 385 385 HOH HOH . C 3 HOH A 67 386 386 HOH HOH . C 3 HOH A 68 390 390 HOH HOH . C 3 HOH A 69 391 391 HOH HOH . C 3 HOH A 70 392 392 HOH HOH . C 3 HOH A 71 393 393 HOH HOH . C 3 HOH A 72 396 396 HOH HOH . C 3 HOH A 73 397 397 HOH HOH . C 3 HOH A 74 399 399 HOH HOH . C 3 HOH A 75 401 401 HOH HOH . C 3 HOH A 76 404 404 HOH HOH . C 3 HOH A 77 405 405 HOH HOH . C 3 HOH A 78 407 407 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 54.834 -30.06 95.856 1 55.05 ? P AMP 701 A 1 HETATM 2 O O1P AMP . . . B 2 54.424 -30.897 97.042 1 52.16 ? O1P AMP 701 A 1 HETATM 3 O O2P AMP . . . B 2 54.072 -30.035 94.558 1 54.38 ? O2P AMP 701 A 1 HETATM 4 O O3P AMP . . . B 2 56.381 -30.455 95.475 1 52.98 ? O3P AMP 701 A 1 HETATM 5 O O5' AMP . . . B 2 54.743 -28.541 96.381 1 51.35 ? O5' AMP 701 A 1 HETATM 6 C C5' AMP . . . B 2 53.421 -28.023 96.644 1 48.46 ? C5' AMP 701 A 1 HETATM 7 C C4' AMP . . . B 2 53.421 -26.503 96.509 1 46.94 ? C4' AMP 701 A 1 HETATM 8 O O4' AMP . . . B 2 54.528 -25.979 97.294 1 44.29 ? O4' AMP 701 A 1 HETATM 9 C C3' AMP . . . B 2 53.664 -26.065 95.045 1 46.52 ? C3' AMP 701 A 1 HETATM 10 O O3' AMP . . . B 2 53.055 -24.769 94.808 1 47.03 ? O3' AMP 701 A 1 HETATM 11 C C2' AMP . . . B 2 55.2 -25.981 95.01 1 45.33 ? C2' AMP 701 A 1 HETATM 12 O O2' AMP . . . B 2 55.546 -25.024 94.022 1 45.99 ? O2' AMP 701 A 1 HETATM 13 C C1' AMP . . . B 2 55.572 -25.462 96.409 1 44.18 ? C1' AMP 701 A 1 HETATM 14 N N9 AMP . . . B 2 56.876 -25.981 96.86 1 43.06 ? N9 AMP 701 A 1 HETATM 15 C C8 AMP . . . B 2 57.454 -27.197 96.588 1 42.8 ? C8 AMP 701 A 1 HETATM 16 N N7 AMP . . . B 2 58.62 -27.377 97.158 1 42.77 ? N7 AMP 701 A 1 HETATM 17 C C5 AMP . . . B 2 58.843 -26.188 97.863 1 42.53 ? C5 AMP 701 A 1 HETATM 18 C C6 AMP . . . B 2 59.916 -25.749 98.697 1 43.29 ? C6 AMP 701 A 1 HETATM 19 N N6 AMP . . . B 2 61.022 -26.479 98.959 1 42.24 ? N6 AMP 701 A 1 HETATM 20 N N1 AMP . . . B 2 59.81 -24.52 99.241 1 42.78 ? N1 AMP 701 A 1 HETATM 21 C C2 AMP . . . B 2 58.7 -23.822 98.968 1 44.97 ? C2 AMP 701 A 1 HETATM 22 N N3 AMP . . . B 2 57.628 -24.101 98.207 1 45.04 ? N3 AMP 701 A 1 HETATM 23 C C4 AMP . . . B 2 57.776 -25.337 97.68 1 43.1 ? C4 AMP 701 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #