data_1OCD # _model_server_result.job_id Cy_h4wjBvkeKbVUUDz4XAQ _model_server_result.datetime_utc '2024-10-14 08:21:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ocd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":105}' # _entry.id 1OCD # _exptl.entry_id 1OCD _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OCD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OCD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B CAB HEC . A HEC 105 1_555 A SG CYS 14 A CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? covale ? covale2 B CAC HEC . A HEC 105 1_555 A SG CYS 17 A CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? metalc ? metalc1 B FE HEC . A HEC 105 1_555 A NE2 HIS 18 A HIS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc2 B FE HEC . A HEC 105 1_555 A SD MET 80 A MET 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1OCD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 105 105 HEC HEC . C 3 HOH A 1 200 200 HOH HOH . C 3 HOH A 2 201 201 HOH HOH . C 3 HOH A 3 202 202 HOH HOH . C 3 HOH A 4 203 203 HOH HOH . C 3 HOH A 5 204 204 HOH HOH . C 3 HOH A 6 205 205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 2.508 1.249 4.203 1 0.29 ? FE HEC 105 A 1 HETATM 2 C CHA HEC . . . B 2 5.283 -0.089 2.834 1 0.3 ? CHA HEC 105 A 1 HETATM 3 C CHB HEC . . . B 2 0.594 -0.523 2.047 1 0.37 ? CHB HEC 105 A 1 HETATM 4 C CHC HEC . . . B 2 -0.272 2.493 5.648 1 0.28 ? CHC HEC 105 A 1 HETATM 5 C CHD HEC . . . B 2 4.39 3.583 5.754 1 0.22 ? CHD HEC 105 A 1 HETATM 6 N NA HEC . . . B 2 2.863 -0.026 2.758 1 0.26 ? NA HEC 105 A 1 HETATM 7 C C1A HEC . . . B 2 4.08 -0.474 2.305 1 0.27 ? C1A HEC 105 A 1 HETATM 8 C C2A HEC . . . B 2 3.932 -1.401 1.208 1 0.32 ? C2A HEC 105 A 1 HETATM 9 C C3A HEC . . . B 2 2.611 -1.523 0.989 1 0.3 ? C3A HEC 105 A 1 HETATM 10 C C4A HEC . . . B 2 1.954 -0.67 1.952 1 0.3 ? C4A HEC 105 A 1 HETATM 11 C CMA HEC . . . B 2 1.948 -2.39 -0.069 1 0.35 ? CMA HEC 105 A 1 HETATM 12 C CAA HEC . . . B 2 5.043 -2.103 0.445 1 0.44 ? CAA HEC 105 A 1 HETATM 13 C CBA HEC . . . B 2 6.112 -1.14 -0.044 1 0.72 ? CBA HEC 105 A 1 HETATM 14 C CGA HEC . . . B 2 6.072 -1.072 -1.562 1 0.98 ? CGA HEC 105 A 1 HETATM 15 O O1A HEC . . . B 2 4.988 -1.142 -2.118 1 1.36 ? O1A HEC 105 A 1 HETATM 16 O O2A HEC . . . B 2 7.125 -0.95 -2.163 1 1.57 ? O2A HEC 105 A 1 HETATM 17 N NB HEC . . . B 2 0.582 1.03 3.915 1 0.3 ? NB HEC 105 A 1 HETATM 18 C C1B HEC . . . B 2 -0.053 0.258 2.97 1 0.34 ? C1B HEC 105 A 1 HETATM 19 C C2B HEC . . . B 2 -1.491 0.372 3.069 1 0.34 ? C2B HEC 105 A 1 HETATM 20 C C3B HEC . . . B 2 -1.738 1.22 4.085 1 0.31 ? C3B HEC 105 A 1 HETATM 21 C C4B HEC . . . B 2 -0.45 1.624 4.603 1 0.29 ? C4B HEC 105 A 1 HETATM 22 C CMB HEC . . . B 2 -2.526 -0.327 2.201 1 0.39 ? CMB HEC 105 A 1 HETATM 23 C CAB HEC . . . B 2 -3.108 1.639 4.596 1 0.32 ? CAB HEC 105 A 1 HETATM 24 C CBB HEC . . . B 2 -4.135 0.554 4.868 1 0.8 ? CBB HEC 105 A 1 HETATM 25 N NC HEC . . . B 2 2.141 2.696 5.461 1 0.23 ? NC HEC 105 A 1 HETATM 26 C C1C HEC . . . B 2 0.921 3.094 5.961 1 0.24 ? C1C HEC 105 A 1 HETATM 27 C C2C HEC . . . B 2 1.054 4.225 6.847 1 0.22 ? C2C HEC 105 A 1 HETATM 28 C C3C HEC . . . B 2 2.371 4.503 6.906 1 0.22 ? C3C HEC 105 A 1 HETATM 29 C C4C HEC . . . B 2 3.037 3.564 6.032 1 0.22 ? C4C HEC 105 A 1 HETATM 30 C CMC HEC . . . B 2 -0.073 5.04 7.474 1 0.23 ? CMC HEC 105 A 1 HETATM 31 C CAC HEC . . . B 2 3.011 5.625 7.697 1 0.23 ? CAC HEC 105 A 1 HETATM 32 C CBC HEC . . . B 2 2.475 5.945 9.083 1 0.61 ? CBC HEC 105 A 1 HETATM 33 N ND HEC . . . B 2 4.423 1.64 4.298 1 0.22 ? ND HEC 105 A 1 HETATM 34 C C1D HEC . . . B 2 5.048 2.626 5.017 1 0.23 ? C1D HEC 105 A 1 HETATM 35 C C2D HEC . . . B 2 6.486 2.571 4.859 1 0.32 ? C2D HEC 105 A 1 HETATM 36 C C3D HEC . . . B 2 6.74 1.549 4.012 1 0.38 ? C3D HEC 105 A 1 HETATM 37 C C4D HEC . . . B 2 5.456 0.976 3.677 1 0.28 ? C4D HEC 105 A 1 HETATM 38 C CMD HEC . . . B 2 7.506 3.483 5.527 1 0.38 ? CMD HEC 105 A 1 HETATM 39 C CAD HEC . . . B 2 8.096 1.139 3.44 1 0.64 ? CAD HEC 105 A 1 HETATM 40 C CBD HEC . . . B 2 8.973 0.386 4.429 1 0.63 ? CBD HEC 105 A 1 HETATM 41 C CGD HEC . . . B 2 9.829 1.364 5.229 1 0.67 ? CGD HEC 105 A 1 HETATM 42 O O1D HEC . . . B 2 10.355 0.964 6.254 1 1.37 ? O1D HEC 105 A 1 HETATM 43 O O2D HEC . . . B 2 9.964 2.505 4.814 1 1.21 ? O2D HEC 105 A 1 HETATM 44 H HHA HEC . . . B 2 6.179 -0.584 2.459 1 0.39 ? HHA HEC 105 A 1 HETATM 45 H HHB HEC . . . B 2 -0.023 -1.123 1.378 1 0.48 ? HHB HEC 105 A 1 HETATM 46 H HHC HEC . . . B 2 -1.164 2.846 6.166 1 0.39 ? HHC HEC 105 A 1 HETATM 47 H HHD HEC . . . B 2 4.879 4.555 5.804 1 0.24 ? HHD HEC 105 A 1 HETATM 48 H HMA1 HEC . . . B 2 2.468 -3.346 -0.134 1 1.08 ? HMA1 HEC 105 A 1 HETATM 49 H HMA2 HEC . . . B 2 1.993 -1.886 -1.034 1 1.08 ? HMA2 HEC 105 A 1 HETATM 50 H HMA3 HEC . . . B 2 0.906 -2.562 0.203 1 1.09 ? HMA3 HEC 105 A 1 HETATM 51 H HAA1 HEC . . . B 2 4.608 -2.609 -0.416 1 1.03 ? HAA1 HEC 105 A 1 HETATM 52 H HAA2 HEC . . . B 2 5.505 -2.845 1.096 1 1.01 ? HAA2 HEC 105 A 1 HETATM 53 H HBA1 HEC . . . B 2 7.092 -1.491 0.279 1 1.38 ? HBA1 HEC 105 A 1 HETATM 54 H HBA2 HEC . . . B 2 5.927 -0.148 0.369 1 1.24 ? HBA2 HEC 105 A 1 HETATM 55 H HMB1 HEC . . . B 2 -3.181 -0.929 2.831 1 1.13 ? HMB1 HEC 105 A 1 HETATM 56 H HMB2 HEC . . . B 2 -2.021 -0.971 1.481 1 1.11 ? HMB2 HEC 105 A 1 HETATM 57 H HMB3 HEC . . . B 2 -3.118 0.418 1.669 1 1.04 ? HMB3 HEC 105 A 1 HETATM 58 H HAB HEC . . . B 2 -2.95 2.171 5.534 1 0.66 ? HAB HEC 105 A 1 HETATM 59 H HBB1 HEC . . . B 2 -4.939 0.961 5.48 1 1.46 ? HBB1 HEC 105 A 1 HETATM 60 H HBB2 HEC . . . B 2 -3.66 -0.272 5.397 1 1.28 ? HBB2 HEC 105 A 1 HETATM 61 H HBB3 HEC . . . B 2 -4.543 0.195 3.924 1 1.45 ? HBB3 HEC 105 A 1 HETATM 62 H HMC1 HEC . . . B 2 0.301 6.032 7.738 1 1.02 ? HMC1 HEC 105 A 1 HETATM 63 H HMC2 HEC . . . B 2 -0.888 5.145 6.755 1 1.01 ? HMC2 HEC 105 A 1 HETATM 64 H HMC3 HEC . . . B 2 -0.437 4.54 8.367 1 1.04 ? HMC3 HEC 105 A 1 HETATM 65 H HAC HEC . . . B 2 4.059 5.369 7.815 1 0.53 ? HAC HEC 105 A 1 HETATM 66 H HBC1 HEC . . . B 2 1.991 5.061 9.499 1 1.29 ? HBC1 HEC 105 A 1 HETATM 67 H HBC2 HEC . . . B 2 1.752 6.757 9.015 1 1.17 ? HBC2 HEC 105 A 1 HETATM 68 H HBC3 HEC . . . B 2 3.299 6.246 9.73 1 1.23 ? HBC3 HEC 105 A 1 HETATM 69 H HMD1 HEC . . . B 2 6.985 4.291 6.044 1 1.06 ? HMD1 HEC 105 A 1 HETATM 70 H HMD2 HEC . . . B 2 8.169 3.904 4.772 1 1.08 ? HMD2 HEC 105 A 1 HETATM 71 H HMD3 HEC . . . B 2 8.09 2.91 6.247 1 1.14 ? HMD3 HEC 105 A 1 HETATM 72 H HAD1 HEC . . . B 2 7.928 0.499 2.573 1 1.46 ? HAD1 HEC 105 A 1 HETATM 73 H HAD2 HEC . . . B 2 8.625 2.033 3.118 1 1.48 ? HAD2 HEC 105 A 1 HETATM 74 H HBD1 HEC . . . B 2 9.624 -0.298 3.881 1 1.38 ? HBD1 HEC 105 A 1 HETATM 75 H HBD2 HEC . . . B 2 8.344 -0.184 5.107 1 1.38 ? HBD2 HEC 105 A 1 # _model_server_stats.io_time_ms 85 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 75 #