data_1OCU
#
_model_server_result.job_id            CRkNN6weahaWKQyKN4YmQA 
_model_server_result.datetime_utc      '2025-07-14 10:15:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ocu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1163}' 
#
_entry.id    1OCU 
#
_exptl.entry_id    1OCU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              554.374 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-(BUTANOYLOXY)-1-{[(HYDROXY{[2,3,4,6-TETRAHYDROXY-5-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL)OXY]METHYL}ETHYL BUTANOATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         110.75 
_cell.angle_beta          97.35 
_cell.angle_gamma         99.49 
_cell.entry_id            1OCU 
_cell.length_a            31.43 
_cell.length_b            55.76 
_cell.length_c            64.75 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1OCU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 90 A LYS 90 1_555 A N CME 91 A CME 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C CME 91 A CME 91 1_555 A N LEU 92 A LEU 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 B C LYS 90 B LYS 90 1_555 B N CME 91 B CME 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 B C CME 91 B CME 91 1_555 B N LEU 92 B LEU 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C17 H32 O16 P2' 
_chem_comp.formula_weight    554.374 
_chem_comp.id                PIB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-(BUTANOYLOXY)-1-{[(HYDROXY{[2,3,4,6-TETRAHYDROXY-5-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL)OXY]METHYL}ETHYL BUTANOATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'D-MYO-PHOSPHATIDYLINOSITOL 3-PHOSPHATED (+)-SN-1,2-DI-O-BUTANOYLGLYCERYL,3-O-PHOSPHO' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PIB sing 281 n n 
C1 C6 PIB sing 282 n n 
C1 O1 PIB sing 283 n n 
C1 HC1 PIB sing 284 n n 
C2 C3 PIB sing 285 n n 
C2 O2 PIB sing 286 n n 
C2 HC2 PIB sing 287 n n 
C3 C4 PIB sing 288 n n 
C3 O3 PIB sing 289 n n 
C3 HC3 PIB sing 290 n n 
C4 C5 PIB sing 291 n n 
C4 O4 PIB sing 292 n n 
C4 HC4 PIB sing 293 n n 
C5 C6 PIB sing 294 n n 
C5 O5 PIB sing 295 n n 
C5 HC5 PIB sing 296 n n 
C6 O6 PIB sing 297 n n 
C6 HC6 PIB sing 298 n n 
O1 P1 PIB sing 299 n n 
O2 HO2 PIB sing 300 n n 
O3 P3 PIB sing 301 n n 
O4 HO4 PIB sing 302 n n 
O5 HO5 PIB sing 303 n n 
O6 HO6 PIB sing 304 n n 
P1 O11 PIB sing 305 n n 
P1 O12 PIB doub 306 n n 
P1 O13 PIB sing 307 n n 
O11 HO11 PIB sing 308 n n 
O13 C7 PIB sing 309 n n 
P3 O31 PIB sing 310 n n 
P3 O32 PIB doub 311 n n 
P3 O33 PIB sing 312 n n 
O31 HO31 PIB sing 313 n n 
O33 HO33 PIB sing 314 n n 
C7 C8 PIB sing 315 n n 
C7 HC71 PIB sing 316 n n 
C7 HC72 PIB sing 317 n n 
C8 C9 PIB sing 318 n n 
C8 O14 PIB sing 319 n n 
C8 HC8 PIB sing 320 n n 
C9 O15 PIB sing 321 n n 
C9 HC91 PIB sing 322 n n 
C9 HC92 PIB sing 323 n n 
C10 C11 PIB sing 324 n n 
C10 O15 PIB sing 325 n n 
C10 O16 PIB doub 326 n n 
C11 C12 PIB sing 327 n n 
C11 H111 PIB sing 328 n n 
C11 H112 PIB sing 329 n n 
C12 C13 PIB sing 330 n n 
C12 H121 PIB sing 331 n n 
C12 H122 PIB sing 332 n n 
C13 H131 PIB sing 333 n n 
C13 H132 PIB sing 334 n n 
C13 H133 PIB sing 335 n n 
C14 C15 PIB sing 336 n n 
C14 O14 PIB sing 337 n n 
C14 O17 PIB doub 338 n n 
C15 C16 PIB sing 339 n n 
C15 H151 PIB sing 340 n n 
C15 H152 PIB sing 341 n n 
C16 C17 PIB sing 342 n n 
C16 H161 PIB sing 343 n n 
C16 H162 PIB sing 344 n n 
C17 H171 PIB sing 345 n n 
C17 H172 PIB sing 346 n n 
C17 H173 PIB sing 347 n n 
#
_atom_sites.entry_id                     1OCU 
_atom_sites.fract_transf_matrix[1][1]    0.031817 
_atom_sites.fract_transf_matrix[1][2]    0.005318 
_atom_sites.fract_transf_matrix[1][3]    0.006654 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018183 
_atom_sites.fract_transf_matrix[2][3]    0.007556 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016863 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PIB A 1 1163 1163 PIB PIB . 
D 2 PIB B 1 1164 1164 PIB PIB . 
E 3 HOH A 1 2001 2001 HOH HOH . 
E 3 HOH A 2 2002 2002 HOH HOH . 
E 3 HOH A 3 2003 2003 HOH HOH . 
E 3 HOH A 4 2004 2004 HOH HOH . 
E 3 HOH A 5 2005 2005 HOH HOH . 
E 3 HOH A 6 2006 2006 HOH HOH . 
E 3 HOH A 7 2007 2007 HOH HOH . 
E 3 HOH A 8 2008 2008 HOH HOH . 
E 3 HOH A 9 2009 2009 HOH HOH . 
E 3 HOH A 10 2010 2010 HOH HOH . 
E 3 HOH A 11 2011 2011 HOH HOH . 
E 3 HOH A 12 2012 2012 HOH HOH . 
E 3 HOH A 13 2013 2013 HOH HOH . 
E 3 HOH A 14 2014 2014 HOH HOH . 
E 3 HOH A 15 2015 2015 HOH HOH . 
E 3 HOH A 16 2016 2016 HOH HOH . 
E 3 HOH A 17 2017 2017 HOH HOH . 
E 3 HOH A 18 2018 2018 HOH HOH . 
E 3 HOH A 19 2019 2019 HOH HOH . 
E 3 HOH A 20 2020 2020 HOH HOH . 
E 3 HOH A 21 2021 2021 HOH HOH . 
E 3 HOH A 22 2022 2022 HOH HOH . 
E 3 HOH A 23 2023 2023 HOH HOH . 
E 3 HOH A 24 2024 2024 HOH HOH . 
E 3 HOH A 25 2025 2025 HOH HOH . 
E 3 HOH A 26 2026 2026 HOH HOH . 
E 3 HOH A 27 2027 2027 HOH HOH . 
E 3 HOH A 28 2028 2028 HOH HOH . 
E 3 HOH A 29 2029 2029 HOH HOH . 
E 3 HOH A 30 2030 2030 HOH HOH . 
E 3 HOH A 31 2031 2031 HOH HOH . 
E 3 HOH A 32 2032 2032 HOH HOH . 
E 3 HOH A 33 2033 2033 HOH HOH . 
E 3 HOH A 34 2034 2034 HOH HOH . 
E 3 HOH A 35 2035 2035 HOH HOH . 
E 3 HOH A 36 2036 2036 HOH HOH . 
E 3 HOH A 37 2037 2037 HOH HOH . 
E 3 HOH A 38 2038 2038 HOH HOH . 
E 3 HOH A 39 2039 2039 HOH HOH . 
E 3 HOH A 40 2040 2040 HOH HOH . 
E 3 HOH A 41 2041 2041 HOH HOH . 
E 3 HOH A 42 2042 2042 HOH HOH . 
E 3 HOH A 43 2043 2043 HOH HOH . 
E 3 HOH A 44 2044 2044 HOH HOH . 
E 3 HOH A 45 2045 2045 HOH HOH . 
E 3 HOH A 46 2046 2046 HOH HOH . 
E 3 HOH A 47 2047 2047 HOH HOH . 
F 3 HOH B 1 2001 2001 HOH HOH . 
F 3 HOH B 2 2002 2002 HOH HOH . 
F 3 HOH B 3 2003 2003 HOH HOH . 
F 3 HOH B 4 2004 2004 HOH HOH . 
F 3 HOH B 5 2005 2005 HOH HOH . 
F 3 HOH B 6 2006 2006 HOH HOH . 
F 3 HOH B 7 2007 2007 HOH HOH . 
F 3 HOH B 8 2008 2008 HOH HOH . 
F 3 HOH B 9 2009 2009 HOH HOH . 
F 3 HOH B 10 2010 2010 HOH HOH . 
F 3 HOH B 11 2011 2011 HOH HOH . 
F 3 HOH B 12 2012 2012 HOH HOH . 
F 3 HOH B 13 2013 2013 HOH HOH . 
F 3 HOH B 14 2014 2014 HOH HOH . 
F 3 HOH B 15 2015 2015 HOH HOH . 
F 3 HOH B 16 2016 2016 HOH HOH . 
F 3 HOH B 17 2017 2017 HOH HOH . 
F 3 HOH B 18 2018 2018 HOH HOH . 
F 3 HOH B 19 2019 2019 HOH HOH . 
F 3 HOH B 20 2020 2020 HOH HOH . 
F 3 HOH B 21 2021 2021 HOH HOH . 
F 3 HOH B 22 2022 2022 HOH HOH . 
F 3 HOH B 23 2023 2023 HOH HOH . 
F 3 HOH B 24 2024 2024 HOH HOH . 
F 3 HOH B 25 2025 2025 HOH HOH . 
F 3 HOH B 26 2026 2026 HOH HOH . 
F 3 HOH B 27 2027 2027 HOH HOH . 
F 3 HOH B 28 2028 2028 HOH HOH . 
F 3 HOH B 29 2029 2029 HOH HOH . 
F 3 HOH B 30 2030 2030 HOH HOH . 
F 3 HOH B 31 2031 2031 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PIB . . . C 2 54.369 78.48 40.38 1 44.79 ? C1 PIB 1163 A 1 
HETATM 2 C C2 PIB . . . C 2 54.645 77.009 39.972 1 40.62 ? C2 PIB 1163 A 1 
HETATM 3 C C3 PIB . . . C 2 54.306 76.09 41.153 1 38.17 ? C3 PIB 1163 A 1 
HETATM 4 C C4 PIB . . . C 2 52.793 76.286 41.616 1 36.07 ? C4 PIB 1163 A 1 
HETATM 5 C C5 PIB . . . C 2 52.585 77.766 42.069 1 37.94 ? C5 PIB 1163 A 1 
HETATM 6 C C6 PIB . . . C 2 52.886 78.692 40.828 1 41.97 ? C6 PIB 1163 A 1 
HETATM 7 O O1 PIB . . . C 2 54.687 79.305 39.255 1 51.05 ? O1 PIB 1163 A 1 
HETATM 8 O O2 PIB . . . C 2 53.836 76.681 38.855 1 41.62 ? O2 PIB 1163 A 1 
HETATM 9 O O3 PIB . . . C 2 54.607 74.772 40.681 1 34.29 ? O3 PIB 1163 A 1 
HETATM 10 O O4 PIB . . . C 2 52.51 75.437 42.73 1 34.03 ? O4 PIB 1163 A 1 
HETATM 11 O O5 PIB . . . C 2 51.241 77.959 42.477 1 38.91 ? O5 PIB 1163 A 1 
HETATM 12 O O6 PIB . . . C 2 52.699 80.054 41.197 1 42.11 ? O6 PIB 1163 A 1 
HETATM 13 P P1 PIB . . . C 2 55.999 80.186 39.131 1 53.96 ? P1 PIB 1163 A 1 
HETATM 14 O O11 PIB . . . C 2 56.219 80.482 37.584 1 54.51 ? O11 PIB 1163 A 1 
HETATM 15 O O12 PIB . . . C 2 57.239 79.436 39.739 1 53.15 ? O12 PIB 1163 A 1 
HETATM 16 O O13 PIB . . . C 2 55.725 81.575 39.936 1 54.29 ? O13 PIB 1163 A 1 
HETATM 17 P P3 PIB . . . C 2 55.113 73.571 41.601 1 31.29 ? P3 PIB 1163 A 1 
HETATM 18 O O31 PIB . . . C 2 53.979 73.193 42.622 1 34.32 ? O31 PIB 1163 A 1 
HETATM 19 O O32 PIB . . . C 2 56.407 74.065 42.366 1 33.22 ? O32 PIB 1163 A 1 
HETATM 20 O O33 PIB . . . C 2 55.363 72.339 40.654 1 32.2 ? O33 PIB 1163 A 1 
HETATM 21 C C7 PIB . . . C 2 55.845 81.676 41.352 1 54.84 ? C7 PIB 1163 A 1 
HETATM 22 C C8 PIB . . . C 2 56.143 83.143 41.637 1 53.83 ? C8 PIB 1163 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           222 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           22 
#