data_1OD7
#
_model_server_result.job_id            S98XwvphiMY173URR8lPpQ 
_model_server_result.datetime_utc      '2024-11-07 08:34:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1od7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    1OD7 
#
_exptl.entry_id    1OD7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              476.476 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ME-A-9-N-(NAPHTHYL-2-CARBONYL)-AMINO-9-DEOXY-NEU5AC 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1OD7 
_cell.length_a            64.866 
_cell.length_b            64.866 
_cell.length_c            64.051 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1OD7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             22 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              22 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             79 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              79 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.035 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C23 H28 N2 O9' 
_chem_comp.formula_weight    476.476 
_chem_comp.id                SUW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ME-A-9-N-(NAPHTHYL-2-CARBONYL)-AMINO-9-DEOXY-NEU5AC 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CX1 O1A SUW doub 288 n n 
CX1 O1B SUW sing 289 n n 
CX1 CX2 SUW sing 290 n n 
O1B H1B SUW sing 291 n n 
CX2 OX2 SUW sing 292 n n 
CX2 CX3 SUW sing 293 n n 
CX2 OX6 SUW sing 294 n n 
OX2 CO2 SUW sing 295 n n 
CO2 HO21 SUW sing 296 n n 
CO2 HO22 SUW sing 297 n n 
CO2 HO23 SUW sing 298 n n 
CX3 CX4 SUW sing 299 n n 
CX3 HX31 SUW sing 300 n n 
CX3 HX32 SUW sing 301 n n 
CX4 OX4 SUW sing 302 n n 
CX4 CX5 SUW sing 303 n n 
CX4 HX4 SUW sing 304 n n 
OX4 HA SUW sing 305 n n 
CX5 NX5 SUW sing 306 n n 
CX5 CX6 SUW sing 307 n n 
CX5 HX5 SUW sing 308 n n 
NX5 C10 SUW sing 309 n n 
NX5 HB SUW sing 310 n n 
C10 O10 SUW doub 311 n n 
C10 C11 SUW sing 312 n n 
C11 H111 SUW sing 313 n n 
C11 H112 SUW sing 314 n n 
C11 H113 SUW sing 315 n n 
CX6 OX6 SUW sing 316 n n 
CX6 CX7 SUW sing 317 n n 
CX6 HX6 SUW sing 318 n n 
CX7 OX7 SUW sing 319 n n 
CX7 CX8 SUW sing 320 n n 
CX7 HX7 SUW sing 321 n n 
OX7 HC SUW sing 322 n n 
CX8 OX8 SUW sing 323 n n 
CX8 CX9 SUW sing 324 n n 
CX8 HX8 SUW sing 325 n n 
OX8 HD SUW sing 326 n n 
CX9 NX6 SUW sing 327 n n 
CX9 HX91 SUW sing 328 n n 
CX9 HX92 SUW sing 329 n n 
NX6 C12 SUW sing 330 n n 
NX6 HE SUW sing 331 n n 
C12 O12 SUW doub 332 n n 
C12 C26 SUW sing 333 n n 
C25 C26 SUW doub 334 n y 
C25 C2A SUW sing 335 n y 
C25 H25 SUW sing 336 n n 
C26 C27 SUW sing 337 n y 
C27 C28 SUW doub 338 n y 
C27 H27 SUW sing 339 n n 
C28 C2B SUW sing 340 n y 
C28 H28 SUW sing 341 n n 
C2B C21 SUW doub 342 n y 
C2B C2A SUW sing 343 n y 
C21 C22 SUW sing 344 n y 
C21 H21 SUW sing 345 n n 
C22 C23 SUW doub 346 n y 
C22 H22 SUW sing 347 n n 
C23 C24 SUW sing 348 n y 
C23 H23 SUW sing 349 n n 
C24 C2A SUW doub 350 n y 
C24 H24 SUW sing 351 n n 
#
_atom_sites.entry_id                     1OD7 
_atom_sites.fract_transf_matrix[1][1]    0.015416 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015416 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015612 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           SUW 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      201 
_pdbx_nonpoly_scheme.auth_seq_num     201 
_pdbx_nonpoly_scheme.pdb_mon_id       SUW 
_pdbx_nonpoly_scheme.auth_mon_id      SUW 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CX1 SUW . . . B 2 61.349 25.381 16.232 1 20.24 ? CX1 SUW 201 A 1 
HETATM 2 O O1A SUW . . . B 2 60.566 24.732 15.487 1 23.5 ? O1A SUW 201 A 1 
HETATM 3 O O1B SUW . . . B 2 61.479 25.178 17.475 1 18.83 ? O1B SUW 201 A 1 
HETATM 4 C CX2 SUW . . . B 2 62.192 26.472 15.595 1 13.3 ? CX2 SUW 201 A 1 
HETATM 5 O OX2 SUW . . . B 2 63.179 25.738 14.927 1 8.17 ? OX2 SUW 201 A 1 
HETATM 6 C CX3 SUW . . . B 2 61.504 27.366 14.56 1 9.57 ? CX3 SUW 201 A 1 
HETATM 7 C CX4 SUW . . . B 2 60.714 28.48 15.277 1 8.17 ? CX4 SUW 201 A 1 
HETATM 8 O OX4 SUW . . . B 2 60.263 29.447 14.344 1 8.17 ? OX4 SUW 201 A 1 
HETATM 9 C CX5 SUW . . . B 2 61.534 29.22 16.351 1 8.17 ? CX5 SUW 201 A 1 
HETATM 10 N NX5 SUW . . . B 2 60.621 30.165 16.974 1 12 ? NX5 SUW 201 A 1 
HETATM 11 C C10 SUW . . . B 2 60.943 31.461 17.057 1 11.75 ? C10 SUW 201 A 1 
HETATM 12 O O10 SUW . . . B 2 61.94 31.967 16.502 1 24.19 ? O10 SUW 201 A 1 
HETATM 13 C C11 SUW . . . B 2 60.044 32.35 17.88 1 8.4 ? C11 SUW 201 A 1 
HETATM 14 C CX6 SUW . . . B 2 62.105 28.17 17.328 1 8.17 ? CX6 SUW 201 A 1 
HETATM 15 O OX6 SUW . . . B 2 62.913 27.19 16.6 1 17.42 ? OX6 SUW 201 A 1 
HETATM 16 C CX7 SUW . . . B 2 62.941 28.706 18.455 1 13.22 ? CX7 SUW 201 A 1 
HETATM 17 O OX7 SUW . . . B 2 63.977 29.479 17.892 1 26.46 ? OX7 SUW 201 A 1 
HETATM 18 C CX8 SUW . . . B 2 63.623 27.589 19.254 1 13.11 ? CX8 SUW 201 A 1 
HETATM 19 O OX8 SUW . . . B 2 62.734 26.523 19.615 1 19.38 ? OX8 SUW 201 A 1 
HETATM 20 C CX9 SUW . . . B 2 64.306 28.237 20.497 1 8.17 ? CX9 SUW 201 A 1 
HETATM 21 N NX6 SUW . . . B 2 65.158 27.287 21.212 1 9.53 ? NX6 SUW 201 A 1 
HETATM 22 C C12 SUW . . . B 2 66.441 27.051 20.863 1 12.01 ? C12 SUW 201 A 1 
HETATM 23 O O12 SUW . . . B 2 67.048 27.931 20.258 1 16.61 ? O12 SUW 201 A 1 
HETATM 24 C C25 SUW . . . B 2 66.42 24.737 21.933 1 12.38 ? C25 SUW 201 A 1 
HETATM 25 C C26 SUW . . . B 2 67.136 25.745 21.208 1 10.04 ? C26 SUW 201 A 1 
HETATM 26 C C27 SUW . . . B 2 68.487 25.486 20.831 1 8.17 ? C27 SUW 201 A 1 
HETATM 27 C C28 SUW . . . B 2 69.118 24.255 21.163 1 20.11 ? C28 SUW 201 A 1 
HETATM 28 C C2B SUW . . . B 2 68.412 23.251 21.881 1 16.18 ? C2B SUW 201 A 1 
HETATM 29 C C21 SUW . . . B 2 69.037 22.015 22.216 1 8.17 ? C21 SUW 201 A 1 
HETATM 30 C C22 SUW . . . B 2 68.311 21.028 22.936 1 8.17 ? C22 SUW 201 A 1 
HETATM 31 C C23 SUW . . . B 2 66.956 21.269 23.327 1 10.06 ? C23 SUW 201 A 1 
HETATM 32 C C24 SUW . . . B 2 66.322 22.499 22.997 1 14.23 ? C24 SUW 201 A 1 
HETATM 33 C C2A SUW . . . B 2 67.034 23.499 22.276 1 15.62 ? C2A SUW 201 A 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#