data_1ODU # _model_server_result.job_id cGTeDqhqGRgb8KBsZHBIoA _model_server_result.datetime_utc '2024-11-19 08:43:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1odu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1448}' # _entry.id 1ODU # _exptl.entry_id 1ODU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-L-fucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ODU _cell.length_a 179.08 _cell.length_b 179.08 _cell.length_c 174.692 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ODU _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 364 A CYS 364 1_555 A SG CYS 365 A CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 B SG CYS 364 B CYS 364 1_555 B SG CYS 365 B CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C6 H12 O5' _chem_comp.formula_weight 164.156 _chem_comp.id FUL _chem_comp.mon_nstd_flag . _chem_comp.name beta-L-fucopyranose _chem_comp.type 'l-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-L-fucose;6-deoxy-beta-L-galactopyranose;L-fucose;fucose;6-DEOXY-BETA-L-GALACTOSE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FUL sing 83 n n C1 O5 FUL sing 84 n n C1 O1 FUL sing 85 n n C1 H1 FUL sing 86 n n C2 O2 FUL sing 87 n n C2 C3 FUL sing 88 n n C2 H2 FUL sing 89 n n O2 HO2 FUL sing 90 n n C3 O3 FUL sing 91 n n C3 C4 FUL sing 92 n n C3 H3 FUL sing 93 n n O3 HO3 FUL sing 94 n n C4 O4 FUL sing 95 n n C4 C5 FUL sing 96 n n C4 H4 FUL sing 97 n n O4 HO4 FUL sing 98 n n C5 C6 FUL sing 99 n n C5 O5 FUL sing 100 n n C5 H5 FUL sing 101 n n C6 H61 FUL sing 102 n n C6 H62 FUL sing 103 n n C6 H63 FUL sing 104 n n O1 HO1 FUL sing 105 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version FUL LFucpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 FUL b-L-fucopyranose 'COMMON NAME' GMML 1 FUL b-L-Fucp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 FUL Fuc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1ODU _atom_sites.fract_transf_matrix[1][1] 0.005584 _atom_sites.fract_transf_matrix[1][2] 0.003224 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006448 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FUL A 1 1448 1448 FUL FUL . D 2 FUL B 1 1448 1448 FUL FUL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FUL . . . C 2 -18.336 19.915 60.758 1 89.66 ? C1 FUL 1448 A 1 HETATM 2 C C2 FUL . . . C 2 -17.679 20.081 62.121 1 89.65 ? C2 FUL 1448 A 1 HETATM 3 O O2 FUL . . . C 2 -16.423 20.7 61.983 1 89.28 ? O2 FUL 1448 A 1 HETATM 4 C C3 FUL . . . C 2 -18.583 20.915 63.015 1 89.59 ? C3 FUL 1448 A 1 HETATM 5 O O3 FUL . . . C 2 -18.013 20.982 64.293 1 89.95 ? O3 FUL 1448 A 1 HETATM 6 C C4 FUL . . . C 2 -19.963 20.278 63.103 1 89.38 ? C4 FUL 1448 A 1 HETATM 7 O O4 FUL . . . C 2 -19.869 19.058 63.807 1 88.8 ? O4 FUL 1448 A 1 HETATM 8 C C5 FUL . . . C 2 -20.519 20.063 61.693 1 89.58 ? C5 FUL 1448 A 1 HETATM 9 C C6 FUL . . . C 2 -21.858 19.335 61.699 1 89.68 ? C6 FUL 1448 A 1 HETATM 10 O O5 FUL . . . C 2 -19.61 19.322 60.904 1 89.97 ? O5 FUL 1448 A 1 HETATM 11 O O1 FUL . . . C 2 -17.533 19.063 59.978 1 89.65 ? O1 FUL 1448 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 425 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #