data_1OFC # _model_server_result.job_id EieZ7R5M321lQnoX-q4whg _model_server_result.datetime_utc '2024-11-14 04:16:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ofc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1979}' # _entry.id 1OFC # _exptl.entry_id 1OFC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.156 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 4-deoxy-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.41 _cell.angle_gamma 90 _cell.entry_id 1OFC _cell.length_a 109.47 _cell.length_b 66.34 _cell.length_c 82.83 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OFC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H12 O5' _chem_comp.formula_weight 164.156 _chem_comp.id G4D _chem_comp.mon_nstd_flag . _chem_comp.name 4-deoxy-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms 4-DEOXY-ALPHA-D-GLUCOSE;4-deoxy-D-glucose;4-deoxy-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 G4D sing 83 n n C1 O1 G4D sing 84 n n C1 O5 G4D sing 85 n n C1 H1 G4D sing 86 n n C2 C3 G4D sing 87 n n C2 O2 G4D sing 88 n n C2 H2 G4D sing 89 n n C3 C4 G4D sing 90 n n C3 O3 G4D sing 91 n n C3 H3 G4D sing 92 n n C4 C5 G4D sing 93 n n C4 H4 G4D sing 94 n n C4 H42 G4D sing 95 n n C5 C6 G4D sing 96 n n C5 O5 G4D sing 97 n n C5 H5 G4D sing 98 n n C6 O6 G4D sing 99 n n C6 H61 G4D sing 100 n n C6 H62 G4D sing 101 n n O1 HO1 G4D sing 102 n n O2 HO2 G4D sing 103 n n O3 HO3 G4D sing 104 n n O6 HO6 G4D sing 105 n n # _pdbx_chem_comp_identifier.comp_id G4D _pdbx_chem_comp_identifier.identifier a-D-4-deoxy-Glcp _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1OFC _atom_sites.fract_transf_matrix[1][1] 0.009135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006257 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014633 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLC X 1 1978 1978 GLC GLC . C 3 G4D X 1 1979 1979 G4D G4D . D 4 GOL X 1 1980 1980 GOL GOL . E 5 HOH X 1 2001 2001 HOH HOH . E 5 HOH X 2 2002 2002 HOH HOH . E 5 HOH X 3 2003 2003 HOH HOH . E 5 HOH X 4 2004 2004 HOH HOH . E 5 HOH X 5 2005 2005 HOH HOH . E 5 HOH X 6 2006 2006 HOH HOH . E 5 HOH X 7 2007 2007 HOH HOH . E 5 HOH X 8 2008 2008 HOH HOH . E 5 HOH X 9 2009 2009 HOH HOH . E 5 HOH X 10 2010 2010 HOH HOH . E 5 HOH X 11 2011 2011 HOH HOH . E 5 HOH X 12 2012 2012 HOH HOH . E 5 HOH X 13 2013 2013 HOH HOH . E 5 HOH X 14 2014 2014 HOH HOH . E 5 HOH X 15 2015 2015 HOH HOH . E 5 HOH X 16 2016 2016 HOH HOH . E 5 HOH X 17 2017 2017 HOH HOH . E 5 HOH X 18 2018 2018 HOH HOH . E 5 HOH X 19 2019 2019 HOH HOH . E 5 HOH X 20 2020 2020 HOH HOH . E 5 HOH X 21 2021 2021 HOH HOH . E 5 HOH X 22 2022 2022 HOH HOH . E 5 HOH X 23 2023 2023 HOH HOH . E 5 HOH X 24 2024 2024 HOH HOH . E 5 HOH X 25 2025 2025 HOH HOH . E 5 HOH X 26 2026 2026 HOH HOH . E 5 HOH X 27 2027 2027 HOH HOH . E 5 HOH X 28 2028 2028 HOH HOH . E 5 HOH X 29 2029 2029 HOH HOH . E 5 HOH X 30 2030 2030 HOH HOH . E 5 HOH X 31 2031 2031 HOH HOH . E 5 HOH X 32 2032 2032 HOH HOH . E 5 HOH X 33 2033 2033 HOH HOH . E 5 HOH X 34 2034 2034 HOH HOH . E 5 HOH X 35 2035 2035 HOH HOH . E 5 HOH X 36 2036 2036 HOH HOH . E 5 HOH X 37 2037 2037 HOH HOH . E 5 HOH X 38 2038 2038 HOH HOH . E 5 HOH X 39 2039 2039 HOH HOH . E 5 HOH X 40 2040 2040 HOH HOH . E 5 HOH X 41 2041 2041 HOH HOH . E 5 HOH X 42 2042 2042 HOH HOH . E 5 HOH X 43 2043 2043 HOH HOH . E 5 HOH X 44 2044 2044 HOH HOH . E 5 HOH X 45 2045 2045 HOH HOH . E 5 HOH X 46 2046 2046 HOH HOH . E 5 HOH X 47 2047 2047 HOH HOH . E 5 HOH X 48 2048 2048 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G4D . . . C 3 47.253 11.09 29.289 1 62.18 ? C1 G4D 1979 X 1 HETATM 2 C C2 G4D . . . C 3 47.714 10.861 30.759 1 61.13 ? C2 G4D 1979 X 1 HETATM 3 C C3 G4D . . . C 3 49.129 11.403 30.985 1 64.26 ? C3 G4D 1979 X 1 HETATM 4 C C4 G4D . . . C 3 50.05 11.184 29.767 1 65.17 ? C4 G4D 1979 X 1 HETATM 5 C C5 G4D . . . C 3 49.312 10.934 28.416 1 62.86 ? C5 G4D 1979 X 1 HETATM 6 C C6 G4D . . . C 3 50.056 9.997 27.478 1 63.42 ? C6 G4D 1979 X 1 HETATM 7 O O1 G4D . . . C 3 45.969 10.762 28.816 1 56.94 ? O1 G4D 1979 X 1 HETATM 8 O O2 G4D . . . C 3 46.847 11.377 31.749 1 65.83 ? O2 G4D 1979 X 1 HETATM 9 O O3 G4D . . . C 3 49.729 10.803 32.141 1 67.22 ? O3 G4D 1979 X 1 HETATM 10 O O5 G4D . . . C 3 48.09 10.257 28.566 1 62.29 ? O5 G4D 1979 X 1 HETATM 11 O O6 G4D . . . C 3 51.292 9.752 28.131 1 67.43 ? O6 G4D 1979 X 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #